Wall clock time and date at job start Mon Mar 30 2020 04:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.28651 * 124.72314 * 2 1 4 4 C 1.33559 * 115.76848 * 180.19114 * 3 2 1 5 5 C 1.47260 * 123.14127 * 179.83231 * 4 3 2 6 6 O 1.21633 * 120.00122 * 179.70829 * 5 4 3 7 7 N 1.34772 * 120.00182 * 359.69587 * 5 4 3 8 8 C 1.47023 * 125.64732 * 359.96857 * 7 5 4 9 9 C 1.54428 * 107.28154 * 181.09073 * 8 7 5 10 10 C 1.55156 * 102.89529 * 22.18672 * 9 8 7 11 11 H 1.09002 * 111.00677 * 82.59320 * 10 9 8 12 12 C 1.50701 * 111.00325 * 206.40729 * 10 9 8 13 13 H 1.08001 * 120.00229 * 356.81931 * 12 10 9 14 14 C 1.37878 * 119.99769 * 176.81941 * 12 10 9 15 15 N 1.31517 * 120.00257 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99994 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47112 * 89.99536 * 16 14 12 18 18 H 1.48495 * 109.47002 * 209.99713 * 16 14 12 19 19 H 1.48504 * 109.46760 * 329.99753 * 16 14 12 20 20 C 1.47430 * 125.65373 * 180.02562 * 7 5 4 21 21 C 1.35211 * 113.71404 * 359.55493 * 4 3 2 22 22 S 1.70770 * 124.71975 * 179.73134 * 2 1 3 23 23 H 1.09000 * 109.47281 * 180.24327 * 1 2 3 24 24 H 1.08999 * 109.47149 * 300.24493 * 1 2 3 25 25 H 1.09003 * 109.47207 * 60.24848 * 1 2 3 26 26 H 1.08996 * 109.87999 * 300.50393 * 8 7 5 27 27 H 1.08994 * 109.88372 * 61.51923 * 8 7 5 28 28 H 1.09001 * 110.72431 * 263.84058 * 9 8 7 29 29 H 1.09002 * 110.76272 * 140.53699 * 9 8 7 30 30 H 0.96992 * 120.00088 * 180.02562 * 15 14 12 31 31 H 1.09008 * 110.36125 * 37.00141 * 20 7 5 32 32 H 1.09000 * 110.45875 * 274.73373 * 20 7 5 33 33 H 1.08006 * 125.58409 * 180.26621 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2398 1.0574 0.0000 4 6 3.5591 0.8495 -0.0040 5 6 4.5462 1.9422 -0.0083 6 8 5.7356 1.6874 -0.0064 7 7 4.1319 3.2247 -0.0144 8 6 2.7317 3.6727 -0.0181 9 6 2.7441 5.2166 -0.0529 10 6 4.1447 5.5385 -0.6378 11 1 4.1381 5.4733 -1.7259 12 6 4.6212 6.8941 -0.1836 13 1 3.9800 7.5167 0.4228 14 6 5.8757 7.3397 -0.5423 15 7 6.6568 6.5814 -1.2803 16 14 6.4667 9.0197 0.0213 17 1 7.1590 8.8881 1.3284 18 1 7.4078 9.5761 -0.9836 19 1 5.3028 9.9305 0.1670 20 6 5.0077 4.4107 -0.0197 21 6 3.9036 -0.4580 0.0022 22 16 2.4796 -1.4036 0.0066 23 1 -0.3634 -1.0276 0.0044 24 1 -0.3633 0.5176 0.8878 25 1 -0.3634 0.5100 -0.8922 26 1 2.2212 3.2863 -0.9002 27 1 2.2285 3.3242 0.8837 28 1 2.6424 5.6259 0.9522 29 1 1.9574 5.5947 -0.7059 30 1 7.5394 6.8947 -1.5323 31 1 5.8898 4.2281 -0.6336 32 1 5.3015 4.6718 0.9970 33 1 4.9131 -0.8419 0.0045 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259896682.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:35 Heat of formation + Delta-G solvation = 7.089005 kcal Electronic energy + Delta-G solvation = -17789.692475 eV Core-core repulsion = 14942.101542 eV Total energy + Delta-G solvation = -2847.590933 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.30600 -38.44591 -36.60165 -32.95617 -32.35126 -30.53840 -28.38735 -28.01518 -25.91698 -23.98359 -22.42737 -20.50924 -19.66110 -19.26659 -17.83098 -16.52029 -15.95586 -15.45344 -15.38897 -14.69187 -14.38548 -14.30674 -13.61077 -13.50136 -12.66359 -12.58776 -12.45002 -12.34316 -12.08222 -11.73421 -11.66291 -11.30055 -10.94016 -10.55809 -10.51632 -9.88457 -9.79070 -9.65248 -9.47347 -9.20633 -8.99701 -8.88815 -8.49845 -7.76984 -6.07065 -4.12409 0.53675 1.18708 1.56117 2.16441 3.30151 3.37296 3.39543 3.67529 3.75524 4.04808 4.41173 4.82238 5.12085 5.20722 5.26418 5.27423 5.34614 5.61853 5.69838 5.90386 5.92523 6.13012 6.46810 6.58522 6.82786 6.93258 7.03878 7.08783 7.45357 7.52782 7.71963 7.92866 8.27709 8.32257 8.72327 8.91176 9.53403 11.02533 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.041228 B = 0.004577 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.982609 B = 6116.468375 C = 6676.259584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.021 3.979 3 N -0.435 5.435 4 C 0.027 3.973 5 C 0.590 3.410 6 O -0.548 6.548 7 N -0.594 5.594 8 C 0.118 3.882 9 C -0.133 4.133 10 C 0.046 3.954 11 H 0.040 0.960 12 C -0.517 4.517 13 H 0.062 0.938 14 C 0.064 3.936 15 N -0.886 5.886 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.117 3.883 21 C -0.231 4.231 22 S 0.184 5.816 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.264 0.736 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.570 -15.166 2.355 19.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.259 4.259 3 N -0.151 5.151 4 C -0.107 4.107 5 C 0.374 3.626 6 O -0.427 6.427 7 N -0.324 5.324 8 C -0.005 4.005 9 C -0.171 4.171 10 C 0.027 3.973 11 H 0.058 0.942 12 C -0.556 4.556 13 H 0.080 0.920 14 C -0.139 4.139 15 N -0.523 5.523 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.003 4.003 21 C -0.373 4.373 22 S 0.440 5.560 23 H 0.096 0.904 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -12.196 -15.864 2.277 20.139 hybrid contribution 1.159 1.559 0.275 1.962 sum -11.037 -14.305 2.552 18.247 Atomic orbital electron populations 1.20401 0.84878 1.03350 1.04694 1.27220 1.02278 0.91398 1.04959 1.67139 1.03237 1.30456 1.14311 1.20657 0.89924 0.93691 1.06445 1.16721 0.86380 0.81097 0.78368 1.90788 1.15946 1.83255 1.52708 1.48723 1.09813 1.05223 1.68640 1.22032 0.81965 0.95548 1.00935 1.22823 1.00591 0.92274 1.01405 1.19836 0.88256 0.93087 0.96094 0.94209 1.20990 1.00586 1.00561 1.33426 0.92016 1.25056 0.96804 0.97432 0.94620 1.69949 1.09355 1.36935 1.36072 0.86544 0.78669 0.84051 0.78467 1.20586 1.21188 1.19805 1.22812 0.94767 0.81935 1.00834 1.26521 1.05668 0.96717 1.08370 1.82664 0.95284 1.12214 1.65841 0.90363 0.89331 0.89295 0.92014 0.92290 0.91696 0.91788 0.92668 0.89912 0.92623 0.79528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.47 36.00 0.38 -0.15 16 2 C 0.02 0.24 7.34 -13.61 -0.10 0.14 16 3 N -0.44 -6.73 7.65 -8.51 -0.07 -6.79 16 4 C 0.03 0.48 6.62 -84.53 -0.56 -0.08 16 5 C 0.59 12.87 7.83 -12.60 -0.10 12.77 16 6 O -0.55 -13.46 16.97 5.25 0.09 -13.37 16 7 N -0.59 -13.21 3.33 -171.79 -0.57 -13.78 16 8 C 0.12 2.26 5.46 -3.01 -0.02 2.25 16 9 C -0.13 -2.70 6.40 -24.84 -0.16 -2.85 16 10 C 0.05 1.16 2.90 -89.64 -0.26 0.90 16 11 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 12 C -0.52 -13.97 8.52 -34.44 -0.29 -14.26 16 13 H 0.06 1.62 7.78 -52.49 -0.41 1.21 16 14 C 0.06 1.76 5.35 -17.82 -0.10 1.67 16 15 N -0.89 -25.69 12.29 55.43 0.68 -25.00 16 16 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 C 0.12 2.96 5.77 -2.54 -0.01 2.94 16 21 C -0.23 -3.26 10.62 29.65 0.31 -2.95 16 22 S 0.18 1.82 22.90 -107.50 -2.46 -0.64 16 23 H 0.08 0.37 8.12 -51.93 -0.42 -0.06 16 24 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 1.14 7.53 -51.93 -0.39 0.74 16 27 H 0.06 1.06 7.62 -51.93 -0.40 0.66 16 28 H 0.06 1.29 8.03 -51.93 -0.42 0.87 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.08 2.35 7.47 -51.92 -0.39 1.96 16 32 H 0.06 1.45 8.03 -51.93 -0.42 1.04 16 33 H 0.19 2.48 8.03 -52.48 -0.42 2.05 16 LS Contribution 294.77 15.07 4.44 4.44 Total: -1.00 -31.95 294.77 -7.90 -39.85 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -4.09 Total: -1.21 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -0.91 Total: 0.38 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.04 Total: -45.58 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.09 Total: -13.37 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.46 Total: -0.64 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.95 -7.90 -39.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259896682.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.942 kcal (2) G-P(sol) polarization free energy of solvation -31.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds