Wall clock time and date at job start Mon Mar 30 2020 04:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.28651 * 124.72314 * 2 1 4 4 C 1.33559 * 115.76848 * 180.19114 * 3 2 1 5 5 C 1.47260 * 123.14127 * 179.83231 * 4 3 2 6 6 O 1.21633 * 120.00122 * 179.70829 * 5 4 3 7 7 N 1.34772 * 120.00182 * 359.69587 * 5 4 3 8 8 C 1.47023 * 125.64732 * 359.96857 * 7 5 4 9 9 C 1.54428 * 107.28154 * 181.09073 * 8 7 5 10 10 C 1.55156 * 102.89529 * 22.18672 * 9 8 7 11 11 H 1.09002 * 111.00677 * 82.59320 * 10 9 8 12 12 C 1.50701 * 111.00325 * 206.40729 * 10 9 8 13 13 H 1.08001 * 120.00229 * 356.81931 * 12 10 9 14 14 C 1.37878 * 119.99769 * 176.81941 * 12 10 9 15 15 N 1.31517 * 120.00257 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99994 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47112 * 89.99536 * 16 14 12 18 18 H 1.48495 * 109.47002 * 209.99713 * 16 14 12 19 19 H 1.48504 * 109.46760 * 329.99753 * 16 14 12 20 20 C 1.47430 * 125.65373 * 180.02562 * 7 5 4 21 21 C 1.35211 * 113.71404 * 359.55493 * 4 3 2 22 22 S 1.70770 * 124.71975 * 179.73134 * 2 1 3 23 23 H 1.09000 * 109.47281 * 180.24327 * 1 2 3 24 24 H 1.08999 * 109.47149 * 300.24493 * 1 2 3 25 25 H 1.09003 * 109.47207 * 60.24848 * 1 2 3 26 26 H 1.08996 * 109.87999 * 300.50393 * 8 7 5 27 27 H 1.08994 * 109.88372 * 61.51923 * 8 7 5 28 28 H 1.09001 * 110.72431 * 263.84058 * 9 8 7 29 29 H 1.09002 * 110.76272 * 140.53699 * 9 8 7 30 30 H 0.96992 * 120.00088 * 180.02562 * 15 14 12 31 31 H 1.09008 * 110.36125 * 37.00141 * 20 7 5 32 32 H 1.09000 * 110.45875 * 274.73373 * 20 7 5 33 33 H 1.08006 * 125.58409 * 180.26621 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2398 1.0574 0.0000 4 6 3.5591 0.8495 -0.0040 5 6 4.5462 1.9422 -0.0083 6 8 5.7356 1.6874 -0.0064 7 7 4.1319 3.2247 -0.0144 8 6 2.7317 3.6727 -0.0181 9 6 2.7441 5.2166 -0.0529 10 6 4.1447 5.5385 -0.6378 11 1 4.1381 5.4733 -1.7259 12 6 4.6212 6.8941 -0.1836 13 1 3.9800 7.5167 0.4228 14 6 5.8757 7.3397 -0.5423 15 7 6.6568 6.5814 -1.2803 16 14 6.4667 9.0197 0.0213 17 1 7.1590 8.8881 1.3284 18 1 7.4078 9.5761 -0.9836 19 1 5.3028 9.9305 0.1670 20 6 5.0077 4.4107 -0.0197 21 6 3.9036 -0.4580 0.0022 22 16 2.4796 -1.4036 0.0066 23 1 -0.3634 -1.0276 0.0044 24 1 -0.3633 0.5176 0.8878 25 1 -0.3634 0.5100 -0.8922 26 1 2.2212 3.2863 -0.9002 27 1 2.2285 3.3242 0.8837 28 1 2.6424 5.6259 0.9522 29 1 1.9574 5.5947 -0.7059 30 1 7.5394 6.8947 -1.5323 31 1 5.8898 4.2281 -0.6336 32 1 5.3015 4.6718 0.9970 33 1 4.9131 -0.8419 0.0045 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259896682.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:34 Heat of formation + Delta-G solvation = -14.238585 kcal Electronic energy + Delta-G solvation = -17790.617309 eV Core-core repulsion = 14942.101542 eV Total energy + Delta-G solvation = -2848.515767 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.63339 -39.93142 -38.38906 -34.97730 -33.29749 -32.35675 -29.84624 -29.28102 -27.66372 -25.62132 -23.92227 -21.70348 -21.55943 -20.49445 -19.27909 -18.55622 -17.33336 -17.02016 -16.87449 -16.38060 -15.94987 -15.48059 -15.09422 -14.39570 -14.36113 -14.24559 -13.75830 -13.58048 -13.38732 -13.18722 -13.00232 -12.94114 -12.81071 -12.49529 -12.32446 -11.62888 -11.35514 -11.17181 -11.03981 -10.65084 -10.63736 -10.59209 -9.92777 -9.52156 -8.18422 -6.31484 -0.50887 0.28255 0.57590 0.93185 1.42785 1.43521 1.54506 2.10410 2.25286 2.42317 2.98581 3.14173 3.72288 3.99442 4.07918 4.24319 4.32476 4.40932 4.54861 4.60466 4.76684 4.78628 4.92276 4.96798 5.12054 5.20640 5.23798 5.33372 5.47004 5.65475 5.82735 6.23668 6.44271 6.59722 6.80490 7.04367 7.38854 8.91076 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.041228 B = 0.004577 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.982609 B = 6116.468375 C = 6676.259584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.014 3.986 3 N -0.467 5.467 4 C -0.006 4.006 5 C 0.581 3.419 6 O -0.592 6.592 7 N -0.603 5.603 8 C 0.130 3.870 9 C -0.121 4.121 10 C 0.040 3.960 11 H 0.009 0.991 12 C -0.530 4.530 13 H 0.070 0.930 14 C 0.010 3.990 15 N -0.924 5.924 16 Si 0.963 3.037 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.259 1.259 20 C 0.132 3.868 21 C -0.246 4.246 22 S 0.300 5.700 23 H 0.110 0.890 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.262 0.738 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.568 -16.514 3.118 22.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.265 4.265 3 N -0.184 5.184 4 C -0.141 4.141 5 C 0.369 3.631 6 O -0.475 6.475 7 N -0.333 5.333 8 C 0.008 3.992 9 C -0.159 4.159 10 C 0.020 3.980 11 H 0.027 0.973 12 C -0.568 4.568 13 H 0.088 0.912 14 C -0.190 4.190 15 N -0.562 5.562 16 Si 0.788 3.212 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.182 1.182 20 C 0.010 3.990 21 C -0.389 4.389 22 S 0.557 5.443 23 H 0.129 0.871 24 H 0.114 0.886 25 H 0.113 0.887 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -15.258 -17.234 3.046 23.218 hybrid contribution 2.023 1.780 0.022 2.695 sum -13.235 -15.454 3.068 20.577 Atomic orbital electron populations 1.20648 0.81731 1.05710 1.05321 1.27985 1.04148 0.91645 1.02718 1.67065 1.02266 1.32666 1.16395 1.20041 0.90361 0.92922 1.10738 1.17472 0.86974 0.81799 0.76888 1.90733 1.18174 1.84039 1.54534 1.48779 1.10499 1.04888 1.69136 1.22067 0.80296 0.94486 1.02334 1.22763 0.98049 0.93221 1.01827 1.19749 0.91372 0.92460 0.94381 0.97256 1.21389 1.00850 1.01434 1.33113 0.91165 1.25939 0.97068 1.01274 0.94670 1.70115 1.09640 1.38886 1.37586 0.85468 0.78392 0.79535 0.77769 1.20317 1.21163 1.18247 1.22306 0.94094 0.83901 0.98701 1.26816 1.08273 0.96907 1.06903 1.82262 0.90758 1.08674 1.62557 0.87137 0.88557 0.88693 0.90939 0.90393 0.90982 0.89411 0.92899 0.94267 0.94385 0.79632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.47 71.23 0.75 0.00 16 2 C 0.01 0.27 7.34 88.57 0.65 0.92 16 3 N -0.47 -13.66 7.65 -180.84 -1.38 -15.04 16 4 C -0.01 -0.20 6.62 40.56 0.27 0.07 16 5 C 0.58 26.52 7.83 86.62 0.68 27.19 16 6 O -0.59 -31.05 16.97 -4.13 -0.07 -31.12 16 7 N -0.60 -27.89 3.33 -815.67 -2.71 -30.60 16 8 C 0.13 4.91 5.46 86.76 0.47 5.39 16 9 C -0.12 -4.82 6.40 31.82 0.20 -4.61 16 10 C 0.04 2.06 2.90 -10.16 -0.03 2.03 16 11 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 12 C -0.53 -29.11 8.52 25.60 0.22 -28.90 16 13 H 0.07 3.66 7.78 -2.91 -0.02 3.63 16 14 C 0.01 0.55 5.35 84.65 0.45 1.01 16 15 N -0.92 -55.98 12.29 21.45 0.26 -55.72 16 16 Si 0.96 43.98 29.54 68.60 2.03 46.00 16 17 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 18 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 20 C 0.13 7.10 5.77 86.85 0.50 7.60 16 21 C -0.25 -6.68 10.62 67.12 0.71 -5.96 16 22 S 0.30 4.77 22.90 -56.49 -1.29 3.48 16 23 H 0.11 0.41 8.12 -2.39 -0.02 0.39 16 24 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 26 H 0.07 2.59 7.53 -2.39 -0.02 2.58 16 27 H 0.08 2.67 7.62 -2.39 -0.02 2.65 16 28 H 0.07 2.77 8.03 -2.39 -0.02 2.75 16 29 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 31 H 0.04 2.40 7.47 -2.38 -0.02 2.39 16 32 H 0.04 2.11 8.03 -2.39 -0.02 2.09 16 33 H 0.19 4.91 8.03 -2.91 -0.02 4.88 16 Total: -1.00 -74.36 294.77 2.82 -71.54 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 1.11 Total: 6.73 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 4.88 Total: 4.73 kcal Atomic # 7 Polarization: -97.52 SS G_CDS: -3.83 Total: -101.36 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.07 Total: -31.12 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -1.29 Total: 3.48 kcal Total: -74.36 2.82 -71.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259896682.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.297 kcal (2) G-P(sol) polarization free energy of solvation -74.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds