Wall clock time and date at job start Mon Mar 30 2020 04:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99725 * 2 1 4 4 H 1.48504 * 109.47133 * 239.99660 * 3 2 1 5 5 H 1.48497 * 109.47406 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47117 * 119.99879 * 3 2 1 7 7 C 1.37877 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99298 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00349 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.67445 * 61.77557 * 9 7 2 11 11 C 1.54896 * 110.75071 * 298.53857 * 9 7 2 12 12 C 1.54271 * 104.19447 * 203.74476 * 11 9 7 13 13 C 1.53876 * 106.59658 * 23.61091 * 12 11 9 14 14 H 1.09009 * 110.03179 * 240.66509 * 13 12 11 15 15 N 1.46499 * 110.03201 * 119.28827 * 13 12 11 16 16 C 1.34777 * 120.00195 * 86.44807 * 15 13 12 17 17 O 1.21633 * 119.99979 * 0.02562 * 16 15 13 18 18 C 1.47264 * 119.99990 * 180.27783 * 16 15 13 19 19 C 1.35203 * 123.14461 * 179.72862 * 18 16 15 20 20 S 1.70940 * 108.83112 * 180.02562 * 19 18 16 21 21 C 1.70765 * 91.12944 * 359.97438 * 20 19 18 22 22 N 1.28652 * 110.55643 * 359.72845 * 21 20 19 23 23 C 1.54258 * 106.60116 * 0.02562 * 13 12 11 24 24 H 0.97005 * 120.00569 * 0.02562 * 1 2 3 25 25 H 1.09001 * 110.48440 * 85.06974 * 11 9 7 26 26 H 1.08989 * 110.48887 * 322.41959 * 11 9 7 27 27 H 1.09007 * 110.02912 * 264.32953 * 12 11 9 28 28 H 1.08992 * 110.03197 * 142.89630 * 12 11 9 29 29 H 0.97000 * 120.00069 * 266.45535 * 15 13 12 30 30 H 1.08000 * 125.58436 * 359.97438 * 19 18 16 31 31 H 1.07997 * 124.72066 * 180.02562 * 21 20 19 32 32 H 1.08999 * 110.48842 * 95.06823 * 23 13 12 33 33 H 1.09005 * 110.49011 * 217.70971 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6413 -2.5915 -0.8982 11 6 0.3769 -2.6281 1.2727 12 6 0.1822 -4.1488 1.4453 13 6 1.3578 -4.8274 0.7206 14 1 0.9842 -5.4665 -0.0796 15 7 2.1426 -5.6201 1.6703 16 6 1.7884 -6.8920 1.9409 17 8 0.8174 -7.3819 1.3963 18 6 2.5737 -7.6868 2.9002 19 6 2.2727 -8.9649 3.2225 20 16 3.4150 -9.5304 4.3614 21 6 4.2287 -8.0292 4.3413 22 7 3.6534 -7.2145 3.5287 23 6 2.2261 -3.6957 0.1334 24 1 -0.4851 0.8400 -0.0004 25 1 -0.5840 -2.1347 1.1269 26 1 0.8948 -2.2095 2.1355 27 1 -0.7618 -4.4577 0.9963 28 1 0.1957 -4.4091 2.5036 29 1 2.9171 -5.2295 2.1045 30 1 1.4455 -9.5349 2.8259 31 1 5.1070 -7.7977 4.9255 32 1 3.0425 -3.4497 0.8124 33 1 2.6146 -3.9809 -0.8443 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295465693.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:39 Heat of formation + Delta-G solvation = -5.334686 kcal Electronic energy + Delta-G solvation = -17440.671014 eV Core-core repulsion = 14592.541349 eV Total energy + Delta-G solvation = -2848.129665 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.49988 -38.76718 -36.93889 -33.64132 -31.94191 -30.79589 -28.16096 -27.45023 -25.68405 -23.89526 -22.59324 -19.98897 -19.52735 -19.25014 -18.67189 -16.75626 -16.29381 -15.92568 -15.40914 -14.95833 -14.65854 -14.28415 -13.80400 -13.60943 -13.54955 -12.62206 -12.32877 -12.18921 -11.74982 -11.10416 -10.99435 -10.90519 -10.59360 -10.33385 -10.13853 -9.97887 -9.94025 -9.78335 -9.49277 -9.27890 -9.18817 -8.79100 -8.56554 -8.34156 -5.98306 -4.01821 0.32485 1.01084 1.36247 1.89933 3.33500 3.38413 3.40330 3.43031 3.48150 3.99747 4.45833 4.81205 5.02119 5.11951 5.33589 5.54119 5.68344 5.72063 5.85767 6.34034 6.38419 6.61925 6.69127 6.76960 6.92180 6.94388 7.16005 7.30075 7.37095 7.74433 7.84665 7.91323 8.05256 8.41088 8.45867 8.99894 9.62150 11.10771 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.039796 B = 0.003802 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.420981 B = 7361.918040 C = 7788.639293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.052 3.948 10 H 0.033 0.967 11 C -0.100 4.100 12 C -0.135 4.135 13 C 0.136 3.864 14 H 0.081 0.919 15 N -0.696 5.696 16 C 0.586 3.414 17 O -0.541 6.541 18 C 0.011 3.989 19 C -0.224 4.224 20 S 0.198 5.802 21 C -0.001 4.001 22 N -0.439 5.439 23 C -0.121 4.121 24 H 0.260 0.740 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.407 0.593 30 H 0.189 0.811 31 H 0.205 0.795 32 H 0.062 0.938 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.265 -17.863 9.549 21.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.033 3.967 10 H 0.051 0.949 11 C -0.138 4.138 12 C -0.173 4.173 13 C 0.033 3.967 14 H 0.099 0.901 15 N -0.345 5.345 16 C 0.368 3.632 17 O -0.419 6.419 18 C -0.124 4.124 19 C -0.366 4.366 20 S 0.452 5.548 21 C -0.301 4.301 22 N -0.154 5.154 23 C -0.159 4.159 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.243 0.757 30 H 0.207 0.793 31 H 0.222 0.778 32 H 0.081 0.919 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.797 -18.410 9.588 21.842 hybrid contribution 0.360 1.640 -0.271 1.701 sum 7.157 -16.771 9.318 20.477 Atomic orbital electron populations 1.69950 1.05869 1.26540 1.50339 1.24971 0.94834 0.98989 0.95079 0.86695 0.79609 0.83321 0.78558 1.20328 1.21372 1.20331 1.21065 0.92749 0.90445 1.51085 0.92674 1.19554 0.91974 0.91001 0.94155 0.94909 1.22311 1.01681 0.90238 0.99586 1.22660 0.96912 0.98941 0.98816 1.21968 0.92289 0.92058 0.90396 0.90061 1.46212 1.31864 1.11883 1.44591 1.17098 0.83412 0.81902 0.80749 1.90799 1.27469 1.71569 1.52105 1.20706 0.95885 0.93382 1.02412 1.26631 1.06497 0.99594 1.03880 1.82873 1.18701 1.17160 1.36059 1.28484 1.05501 0.93735 1.02348 1.66974 1.07091 1.34026 1.07282 1.22769 0.98781 0.95322 0.99027 0.93020 0.91173 0.93463 0.92457 0.93214 0.75737 0.79330 0.77837 0.91919 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.49 12.02 55.43 0.67 -24.82 16 2 C 0.06 1.74 5.33 -17.82 -0.10 1.65 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.02 8.54 -34.44 -0.29 -14.31 16 8 H 0.06 1.47 7.78 -52.48 -0.41 1.06 16 9 C 0.05 1.28 2.83 -89.76 -0.25 1.03 16 10 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 11 C -0.10 -2.35 5.57 -25.07 -0.14 -2.49 16 12 C -0.13 -2.73 6.59 -25.61 -0.17 -2.90 16 13 C 0.14 2.61 3.23 -66.82 -0.22 2.39 16 14 H 0.08 1.60 7.61 -51.92 -0.39 1.20 16 15 N -0.70 -11.89 4.99 -53.84 -0.27 -12.16 16 16 C 0.59 10.03 7.79 -12.59 -0.10 9.93 16 17 O -0.54 -10.66 16.39 5.25 0.09 -10.58 16 18 C 0.01 0.15 6.70 -84.53 -0.57 -0.41 16 19 C -0.22 -2.45 10.62 29.65 0.31 -2.14 16 20 S 0.20 1.40 22.96 -107.50 -2.47 -1.07 16 21 C 0.00 -0.01 12.17 51.43 0.63 0.62 16 22 N -0.44 -5.49 10.12 -12.37 -0.13 -5.62 16 23 C -0.12 -2.47 5.94 -25.06 -0.15 -2.62 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 25 H 0.07 1.80 7.37 -51.93 -0.38 1.42 16 26 H 0.05 1.15 8.04 -51.94 -0.42 0.73 16 27 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 28 H 0.05 0.97 7.92 -51.93 -0.41 0.56 16 29 H 0.41 6.46 7.86 -40.82 -0.32 6.14 16 30 H 0.19 1.91 8.03 -52.49 -0.42 1.49 16 31 H 0.21 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.06 1.25 7.63 -51.93 -0.40 0.86 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 295.67 15.07 4.46 4.46 Total: -1.00 -31.25 295.67 -7.69 -38.95 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -3.98 Total: 3.89 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -1.04 Total: -9.26 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.27 Total: -42.60 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.47 Total: -1.07 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.25 -7.69 -38.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295465693.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.612 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds