Wall clock time and date at job start Mon Mar 30 2020 04:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99725 * 2 1 4 4 H 1.48504 * 109.47133 * 239.99660 * 3 2 1 5 5 H 1.48497 * 109.47406 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47117 * 119.99879 * 3 2 1 7 7 C 1.37877 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99298 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00349 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.67445 * 61.77557 * 9 7 2 11 11 C 1.54896 * 110.75071 * 298.53857 * 9 7 2 12 12 C 1.54271 * 104.19447 * 203.74476 * 11 9 7 13 13 C 1.53876 * 106.59658 * 23.61091 * 12 11 9 14 14 H 1.09009 * 110.03179 * 240.66509 * 13 12 11 15 15 N 1.46499 * 110.03201 * 119.28827 * 13 12 11 16 16 C 1.34777 * 120.00195 * 86.44807 * 15 13 12 17 17 O 1.21633 * 119.99979 * 0.02562 * 16 15 13 18 18 C 1.47264 * 119.99990 * 180.27783 * 16 15 13 19 19 C 1.35203 * 123.14461 * 179.72862 * 18 16 15 20 20 S 1.70940 * 108.83112 * 180.02562 * 19 18 16 21 21 C 1.70765 * 91.12944 * 359.97438 * 20 19 18 22 22 N 1.28652 * 110.55643 * 359.72845 * 21 20 19 23 23 C 1.54258 * 106.60116 * 0.02562 * 13 12 11 24 24 H 0.97005 * 120.00569 * 0.02562 * 1 2 3 25 25 H 1.09001 * 110.48440 * 85.06974 * 11 9 7 26 26 H 1.08989 * 110.48887 * 322.41959 * 11 9 7 27 27 H 1.09007 * 110.02912 * 264.32953 * 12 11 9 28 28 H 1.08992 * 110.03197 * 142.89630 * 12 11 9 29 29 H 0.97000 * 120.00069 * 266.45535 * 15 13 12 30 30 H 1.08000 * 125.58436 * 359.97438 * 19 18 16 31 31 H 1.07997 * 124.72066 * 180.02562 * 21 20 19 32 32 H 1.08999 * 110.48842 * 95.06823 * 23 13 12 33 33 H 1.09005 * 110.49011 * 217.70971 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6413 -2.5915 -0.8982 11 6 0.3769 -2.6281 1.2727 12 6 0.1822 -4.1488 1.4453 13 6 1.3578 -4.8274 0.7206 14 1 0.9842 -5.4665 -0.0796 15 7 2.1426 -5.6201 1.6703 16 6 1.7884 -6.8920 1.9409 17 8 0.8174 -7.3819 1.3963 18 6 2.5737 -7.6868 2.9002 19 6 2.2727 -8.9649 3.2225 20 16 3.4150 -9.5304 4.3614 21 6 4.2287 -8.0292 4.3413 22 7 3.6534 -7.2145 3.5287 23 6 2.2261 -3.6957 0.1334 24 1 -0.4851 0.8400 -0.0004 25 1 -0.5840 -2.1347 1.1269 26 1 0.8948 -2.2095 2.1355 27 1 -0.7618 -4.4577 0.9963 28 1 0.1957 -4.4091 2.5036 29 1 2.9171 -5.2295 2.1045 30 1 1.4455 -9.5349 2.8259 31 1 5.1070 -7.7977 4.9255 32 1 3.0425 -3.4497 0.8124 33 1 2.6146 -3.9809 -0.8443 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295465693.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:39 Heat of formation + Delta-G solvation = -26.561145 kcal Electronic energy + Delta-G solvation = -17441.591462 eV Core-core repulsion = 14592.541349 eV Total energy + Delta-G solvation = -2849.050113 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.55991 -39.98467 -38.55546 -35.34592 -33.80608 -31.66204 -30.01690 -29.03727 -26.80533 -25.67483 -23.74026 -21.53700 -21.01657 -20.57953 -19.80823 -18.52175 -17.46032 -17.24661 -16.65282 -16.50658 -16.11934 -15.90758 -15.11241 -14.81246 -14.46415 -14.28158 -14.04431 -13.67468 -13.04957 -12.93609 -12.78207 -12.63537 -12.44896 -12.17080 -11.70712 -11.41147 -11.23816 -11.06335 -10.83337 -10.82711 -10.72091 -10.45609 -10.18909 -9.85494 -8.09362 -6.20038 -0.45545 0.34639 0.65265 0.95666 1.44090 1.45282 1.52805 2.21638 2.30217 2.46073 3.15140 3.21135 3.83248 3.98781 4.01752 4.14817 4.19075 4.39015 4.65402 4.72377 4.85966 4.91168 4.98513 5.02876 5.12720 5.24372 5.38445 5.60483 5.66021 5.91093 5.98992 6.31009 6.37404 6.63486 6.89555 7.11833 7.47554 8.98947 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.039796 B = 0.003802 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.420981 B = 7361.918040 C = 7788.639293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.012 3.988 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.532 4.532 8 H 0.058 0.942 9 C 0.041 3.959 10 H 0.004 0.996 11 C -0.089 4.089 12 C -0.124 4.124 13 C 0.148 3.852 14 H 0.076 0.924 15 N -0.694 5.694 16 C 0.583 3.417 17 O -0.577 6.577 18 C -0.021 4.021 19 C -0.239 4.239 20 S 0.303 5.697 21 C -0.006 4.006 22 N -0.474 5.474 23 C -0.107 4.107 24 H 0.260 0.740 25 H 0.042 0.958 26 H 0.036 0.964 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.414 0.586 30 H 0.190 0.810 31 H 0.241 0.759 32 H 0.070 0.930 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.393 -19.342 11.205 24.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.196 1.196 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.570 4.570 8 H 0.076 0.924 9 C 0.023 3.977 10 H 0.022 0.978 11 C -0.127 4.127 12 C -0.162 4.162 13 C 0.044 3.956 14 H 0.095 0.905 15 N -0.343 5.343 16 C 0.368 3.632 17 O -0.457 6.457 18 C -0.156 4.156 19 C -0.382 4.382 20 S 0.559 5.441 21 C -0.305 4.305 22 N -0.189 5.189 23 C -0.145 4.145 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.251 0.749 30 H 0.208 0.792 31 H 0.257 0.743 32 H 0.088 0.912 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.965 -19.912 11.269 24.573 hybrid contribution -0.270 1.959 -0.706 2.100 sum 8.695 -17.952 10.563 22.571 Atomic orbital electron populations 1.70091 1.07307 1.27233 1.51228 1.25778 0.95644 1.02486 0.94802 0.85661 0.78353 0.79029 0.78896 1.19596 1.21272 1.19492 1.21449 0.93121 0.91674 1.50780 0.92384 1.19535 0.92743 0.92189 0.93281 0.97779 1.22076 0.99771 0.92248 0.98606 1.22529 0.97643 0.96538 0.99531 1.21616 0.91712 0.91714 0.90585 0.90549 1.46047 1.31855 1.12080 1.44330 1.17590 0.83181 0.81666 0.80720 1.90764 1.29120 1.72192 1.53635 1.20284 0.97413 0.94141 1.03810 1.26925 1.07595 0.99013 1.04689 1.82549 1.15042 1.14322 1.32226 1.29142 1.05961 0.94278 1.01075 1.66942 1.07391 1.35734 1.08878 1.22572 0.98058 0.93905 0.99960 0.93143 0.93965 0.94555 0.92505 0.92403 0.74940 0.79235 0.74300 0.91160 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.03 12.02 21.45 0.26 -53.77 16 2 C 0.01 0.65 5.33 84.65 0.45 1.11 16 3 Si 0.95 43.71 29.54 68.60 2.03 45.74 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.53 -29.29 8.54 25.60 0.22 -29.08 16 8 H 0.06 3.08 7.78 -2.91 -0.02 3.06 16 9 C 0.04 2.10 2.83 -10.24 -0.03 2.07 16 10 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 11 C -0.09 -4.31 5.57 31.67 0.18 -4.14 16 12 C -0.12 -5.11 6.59 31.32 0.21 -4.90 16 13 C 0.15 5.71 3.23 45.71 0.15 5.86 16 14 H 0.08 3.05 7.61 -2.38 -0.02 3.03 16 15 N -0.69 -23.57 4.99 -442.51 -2.21 -25.78 16 16 C 0.58 19.97 7.79 86.62 0.67 20.65 16 17 O -0.58 -23.02 16.39 -4.14 -0.07 -23.09 16 18 C -0.02 -0.57 6.70 40.56 0.27 -0.30 16 19 C -0.24 -4.81 10.62 67.12 0.71 -4.10 16 20 S 0.30 3.12 22.96 -56.49 -1.30 1.82 16 21 C -0.01 -0.08 12.17 130.71 1.59 1.51 16 22 N -0.47 -10.98 10.12 -193.04 -1.95 -12.94 16 23 C -0.11 -4.38 5.94 31.68 0.19 -4.19 16 24 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 25 H 0.04 2.25 7.37 -2.39 -0.02 2.24 16 26 H 0.04 1.80 8.04 -2.39 -0.02 1.78 16 27 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 28 H 0.06 2.28 7.92 -2.39 -0.02 2.26 16 29 H 0.41 12.93 7.86 -92.71 -0.73 12.20 16 30 H 0.19 3.63 8.03 -2.91 -0.02 3.60 16 31 H 0.24 1.17 8.06 -2.91 -0.02 1.15 16 32 H 0.07 2.76 7.63 -2.39 -0.02 2.75 16 33 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 Total: -1.00 -69.26 295.67 1.77 -67.49 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.40 Total: 16.04 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: 4.61 Total: -15.52 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -3.90 Total: -92.49 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.07 Total: -23.09 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.30 Total: 1.82 kcal Total: -69.26 1.77 -67.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295465693.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.931 kcal (2) G-P(sol) polarization free energy of solvation -69.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds