Wall clock time and date at job start Mon Mar 30 2020 05:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99985 * 2 1 4 4 H 1.48503 * 109.46990 * 239.99941 * 3 2 1 5 5 H 1.48497 * 109.47011 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47086 * 120.00455 * 3 2 1 7 7 C 1.37877 * 119.99528 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99464 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00480 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47443 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99899 * 90.00099 * 10 9 7 12 12 C 1.50703 * 109.47064 * 270.00279 * 11 10 9 13 13 C 1.34515 * 125.79060 * 89.99944 * 12 11 10 14 14 C 1.41380 * 106.83832 * 179.97438 * 13 12 11 15 15 C 1.34506 * 106.84493 * 359.97438 * 14 13 12 16 16 O 1.34306 * 125.78568 * 269.69282 * 12 11 10 17 17 C 1.34773 * 120.00646 * 270.00265 * 10 9 7 18 18 O 1.21282 * 120.00692 * 179.97438 * 17 10 9 19 19 C 1.50705 * 119.99759 * 0.02562 * 17 10 9 20 20 C 1.50698 * 109.47452 * 180.02562 * 19 17 10 21 21 N 1.34769 * 120.00115 * 179.97438 * 20 19 17 22 22 O 1.21282 * 119.99987 * 359.97438 * 20 19 17 23 23 H 0.97003 * 119.99687 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.46922 * 60.00021 * 9 7 2 25 25 H 1.08996 * 109.47481 * 300.00312 * 9 7 2 26 26 H 1.09002 * 109.47068 * 30.00248 * 11 10 9 27 27 H 1.09001 * 109.47372 * 150.00336 * 11 10 9 28 28 H 1.07996 * 126.58016 * 0.03378 * 13 12 11 29 29 H 1.08006 * 126.57610 * 179.97438 * 14 13 12 30 30 H 1.08005 * 125.79499 * 180.02562 * 15 14 13 31 31 H 1.09006 * 109.46606 * 299.99889 * 19 17 10 32 32 H 1.08999 * 109.47462 * 59.99201 * 19 17 10 33 33 H 0.97002 * 120.00259 * 359.97438 * 21 20 19 34 34 H 0.97008 * 120.00327 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 2.6798 -4.1700 1.2664 12 6 3.9233 -3.4379 1.7009 13 6 3.9588 -2.3377 2.4740 14 6 5.3204 -1.9905 2.6300 15 6 6.0356 -2.8996 1.9435 16 8 5.1844 -3.7766 1.3865 17 6 2.6400 -4.1244 -1.1694 18 8 3.4284 -5.0460 -1.1705 19 6 2.1499 -3.5507 -2.4740 20 6 2.7848 -4.2951 -3.6202 21 7 2.4918 -3.9531 -4.8905 22 8 3.5594 -5.2018 -3.3996 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 1.9070 -4.0565 2.0267 27 1 2.9081 -5.2278 1.1354 28 1 3.1101 -1.8196 2.8955 29 1 5.7113 -1.1555 3.1926 30 1 7.1120 -2.9227 1.8578 31 1 1.0661 -3.6523 -2.5311 32 1 2.4194 -2.4961 -2.5313 33 1 1.8720 -3.2282 -5.0670 34 1 2.9008 -4.4320 -5.6284 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353773555.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:37 Heat of formation + Delta-G solvation = -54.603062 kcal Electronic energy + Delta-G solvation = -20597.171778 eV Core-core repulsion = 17304.152805 eV Total energy + Delta-G solvation = -3293.018973 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.91929 -39.65783 -38.04108 -35.06915 -33.29200 -32.73552 -32.31705 -30.88100 -29.09747 -27.33828 -25.14531 -22.99676 -21.10695 -21.03492 -19.94335 -18.48326 -17.06149 -16.86831 -16.83547 -16.50079 -15.48619 -15.34068 -15.13307 -14.79512 -14.41216 -14.11680 -13.34823 -13.02791 -12.67510 -12.36835 -12.27795 -12.17112 -12.11050 -11.54706 -11.42886 -11.16038 -10.96933 -10.78982 -10.25535 -9.82786 -9.60492 -9.37004 -9.26387 -8.82212 -8.59590 -7.98930 -7.71470 -6.21913 -4.27691 2.27078 3.05065 3.15342 3.21747 3.26860 3.31351 3.40234 3.64014 3.71393 4.22334 4.34685 5.10447 5.13140 5.27473 5.38943 5.60045 5.61891 5.72407 5.87176 6.01943 6.04745 6.37903 6.56615 6.63805 6.68856 7.04159 7.07835 7.12056 7.46265 7.59896 7.74534 7.77416 8.02309 8.26914 8.63617 8.79654 9.05492 9.40474 10.84667 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.012314 B = 0.009436 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.324385 B = 2966.527351 C = 4422.110885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.067 3.933 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.531 4.531 8 H 0.062 0.938 9 C 0.236 3.764 10 N -0.598 5.598 11 C 0.203 3.797 12 C -0.016 4.016 13 C -0.181 4.181 14 C -0.218 4.218 15 C -0.057 4.057 16 O -0.169 6.169 17 C 0.519 3.481 18 O -0.522 6.522 19 C -0.159 4.159 20 C 0.516 3.484 21 N -0.864 5.864 22 O -0.505 6.505 23 H 0.265 0.735 24 H 0.039 0.961 25 H 0.037 0.963 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.148 0.852 29 H 0.140 0.860 30 H 0.193 0.807 31 H 0.118 0.882 32 H 0.131 0.869 33 H 0.399 0.601 34 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.270 -2.859 -1.662 4.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.570 4.570 8 H 0.081 0.919 9 C 0.116 3.884 10 N -0.331 5.331 11 C 0.079 3.921 12 C -0.068 4.068 13 C -0.201 4.201 14 C -0.237 4.237 15 C -0.125 4.125 16 O -0.064 6.064 17 C 0.305 3.695 18 O -0.398 6.398 19 C -0.202 4.202 20 C 0.299 3.701 21 N -0.430 5.430 22 O -0.377 6.377 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.122 0.878 27 H 0.105 0.895 28 H 0.166 0.834 29 H 0.157 0.843 30 H 0.209 0.791 31 H 0.136 0.864 32 H 0.149 0.851 33 H 0.227 0.773 34 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 3.064 -4.065 -1.484 5.302 hybrid contribution 0.255 1.937 -0.272 1.972 sum 3.319 -2.128 -1.755 4.316 Atomic orbital electron populations 1.69907 1.05904 1.27330 1.50005 1.24893 0.94749 0.99070 0.94879 0.86644 0.79595 0.82838 0.78979 1.20238 1.21283 1.20043 1.21480 0.93732 0.90222 1.51521 0.91936 1.19501 0.87307 0.82777 0.98785 1.48281 1.45496 1.35838 1.03499 1.19604 0.88896 0.96688 0.86935 1.22963 0.84192 0.99185 1.00417 1.21560 0.97246 0.97674 1.03597 1.21765 0.93962 1.02238 1.05719 1.23856 0.95635 0.92524 1.00483 1.84081 1.15944 1.46846 1.59551 1.19843 0.81571 0.83022 0.85093 1.90774 1.33421 1.28631 1.86932 1.21565 1.03159 1.03306 0.92150 1.20335 0.81799 0.83850 0.84111 1.43898 1.51073 1.40433 1.07583 1.90855 1.33683 1.29112 1.84082 0.92540 0.94273 0.94459 0.87849 0.89486 0.83400 0.84257 0.79066 0.86407 0.85095 0.77257 0.77333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.18 13.29 55.43 0.74 -22.44 16 2 C 0.07 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 20.05 29.54 -169.99 -5.02 15.02 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.53 -12.94 9.04 -34.44 -0.31 -13.26 16 8 H 0.06 1.63 7.65 -52.49 -0.40 1.23 16 9 C 0.24 5.17 5.01 -5.20 -0.03 5.14 16 10 N -0.60 -12.27 2.44 -176.43 -0.43 -12.70 16 11 C 0.20 3.79 5.98 -5.19 -0.03 3.76 16 12 C -0.02 -0.32 6.90 -35.62 -0.25 -0.56 16 13 C -0.18 -3.46 10.40 -39.70 -0.41 -3.87 16 14 C -0.22 -3.76 10.91 -39.71 -0.43 -4.20 16 15 C -0.06 -0.96 12.09 29.41 0.36 -0.60 16 16 O -0.17 -3.44 10.65 5.68 0.06 -3.38 16 17 C 0.52 11.04 7.66 -10.98 -0.08 10.95 16 18 O -0.52 -12.82 13.76 -18.96 -0.26 -13.08 16 19 C -0.16 -2.77 4.74 -29.03 -0.14 -2.91 16 20 C 0.52 8.90 8.09 -10.99 -0.09 8.81 16 21 N -0.86 -10.09 8.87 31.22 0.28 -9.81 16 22 O -0.50 -11.25 15.02 -18.96 -0.28 -11.53 16 23 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 24 H 0.04 0.85 6.44 -51.93 -0.33 0.52 16 25 H 0.04 0.85 7.89 -51.93 -0.41 0.44 16 26 H 0.10 1.67 7.89 -51.93 -0.41 1.26 16 27 H 0.09 1.61 7.42 -51.93 -0.39 1.22 16 28 H 0.15 2.80 8.06 -52.49 -0.42 2.38 16 29 H 0.14 2.06 8.06 -52.48 -0.42 1.63 16 30 H 0.19 2.42 8.06 -52.48 -0.42 1.99 16 31 H 0.12 1.75 7.40 -51.93 -0.38 1.37 16 32 H 0.13 2.28 8.00 -51.93 -0.42 1.87 16 33 H 0.40 3.47 8.83 -40.82 -0.36 3.10 16 34 H 0.40 4.03 8.93 -40.82 -0.36 3.66 16 LS Contribution 304.11 15.07 4.58 4.58 Total: -1.00 -33.48 304.11 -5.72 -39.21 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -3.87 Total: 9.28 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -1.51 Total: 4.84 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.58 Total: -44.95 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.49 Total: -27.99 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.48 -5.72 -39.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353773555.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.396 kcal (2) G-P(sol) polarization free energy of solvation -33.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds