Wall clock time and date at job start Mon Mar 30 2020 05:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99985 * 2 1 4 4 H 1.48503 * 109.46990 * 239.99941 * 3 2 1 5 5 H 1.48497 * 109.47011 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47086 * 120.00455 * 3 2 1 7 7 C 1.37877 * 119.99528 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99464 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00480 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47443 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99899 * 90.00099 * 10 9 7 12 12 C 1.50703 * 109.47064 * 270.00279 * 11 10 9 13 13 C 1.34515 * 125.79060 * 89.99944 * 12 11 10 14 14 C 1.41380 * 106.83832 * 179.97438 * 13 12 11 15 15 C 1.34506 * 106.84493 * 359.97438 * 14 13 12 16 16 O 1.34306 * 125.78568 * 269.69282 * 12 11 10 17 17 C 1.34773 * 120.00646 * 270.00265 * 10 9 7 18 18 O 1.21282 * 120.00692 * 179.97438 * 17 10 9 19 19 C 1.50705 * 119.99759 * 0.02562 * 17 10 9 20 20 C 1.50698 * 109.47452 * 180.02562 * 19 17 10 21 21 N 1.34769 * 120.00115 * 179.97438 * 20 19 17 22 22 O 1.21282 * 119.99987 * 359.97438 * 20 19 17 23 23 H 0.97003 * 119.99687 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.46922 * 60.00021 * 9 7 2 25 25 H 1.08996 * 109.47481 * 300.00312 * 9 7 2 26 26 H 1.09002 * 109.47068 * 30.00248 * 11 10 9 27 27 H 1.09001 * 109.47372 * 150.00336 * 11 10 9 28 28 H 1.07996 * 126.58016 * 0.03378 * 13 12 11 29 29 H 1.08006 * 126.57610 * 179.97438 * 14 13 12 30 30 H 1.08005 * 125.79499 * 180.02562 * 15 14 13 31 31 H 1.09006 * 109.46606 * 299.99889 * 19 17 10 32 32 H 1.08999 * 109.47462 * 59.99201 * 19 17 10 33 33 H 0.97002 * 120.00259 * 359.97438 * 21 20 19 34 34 H 0.97008 * 120.00327 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 2.6798 -4.1700 1.2664 12 6 3.9233 -3.4379 1.7009 13 6 3.9588 -2.3377 2.4740 14 6 5.3204 -1.9905 2.6300 15 6 6.0356 -2.8996 1.9435 16 8 5.1844 -3.7766 1.3865 17 6 2.6400 -4.1244 -1.1694 18 8 3.4284 -5.0460 -1.1705 19 6 2.1499 -3.5507 -2.4740 20 6 2.7848 -4.2951 -3.6202 21 7 2.4918 -3.9531 -4.8905 22 8 3.5594 -5.2018 -3.3996 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 1.9070 -4.0565 2.0267 27 1 2.9081 -5.2278 1.1354 28 1 3.1101 -1.8196 2.8955 29 1 5.7113 -1.1555 3.1926 30 1 7.1120 -2.9227 1.8578 31 1 1.0661 -3.6523 -2.5311 32 1 2.4194 -2.4961 -2.5313 33 1 1.8720 -3.2282 -5.0670 34 1 2.9008 -4.4320 -5.6284 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353773555.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:37 Heat of formation + Delta-G solvation = -77.894265 kcal Electronic energy + Delta-G solvation = -20598.181760 eV Core-core repulsion = 17304.152805 eV Total energy + Delta-G solvation = -3294.028955 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.36561 -41.18446 -39.54967 -36.78306 -34.58616 -34.56032 -33.78805 -32.36770 -30.54116 -29.11831 -26.64549 -24.82332 -22.55130 -22.40909 -21.35002 -19.99970 -18.71155 -18.39896 -18.21586 -17.98060 -17.04169 -16.82690 -16.67865 -16.34604 -16.07506 -15.62633 -14.87075 -14.41365 -14.32499 -14.02575 -13.90509 -13.63498 -13.51577 -13.30334 -12.91703 -12.85060 -12.65342 -12.47191 -12.06538 -11.69794 -11.12602 -10.71757 -10.55571 -10.54217 -10.41633 -9.61048 -9.24990 -8.13630 -6.23404 0.83447 1.43259 1.46930 1.52321 1.66525 1.74078 1.85070 2.25825 2.31006 2.46644 2.88098 3.18137 3.65222 3.93033 4.10164 4.24231 4.27210 4.38798 4.45957 4.56863 4.63211 4.94536 5.00424 5.12955 5.26921 5.31003 5.69582 5.74208 5.85337 6.00358 6.14775 6.33553 6.50366 6.60447 6.88486 7.33718 7.46507 7.52739 8.91626 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.012314 B = 0.009436 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.324385 B = 2966.527351 C = 4422.110885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.034 3.966 3 Si 0.938 3.062 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.279 1.279 7 C -0.527 4.527 8 H 0.044 0.956 9 C 0.248 3.752 10 N -0.596 5.596 11 C 0.197 3.803 12 C -0.039 4.039 13 C -0.189 4.189 14 C -0.228 4.228 15 C -0.052 4.052 16 O -0.195 6.195 17 C 0.509 3.491 18 O -0.558 6.558 19 C -0.154 4.154 20 C 0.517 3.483 21 N -0.833 5.833 22 O -0.562 6.562 23 H 0.266 0.734 24 H 0.045 0.955 25 H 0.030 0.970 26 H 0.125 0.875 27 H 0.084 0.916 28 H 0.145 0.855 29 H 0.166 0.834 30 H 0.233 0.767 31 H 0.146 0.854 32 H 0.133 0.867 33 H 0.418 0.582 34 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.419 -1.750 -2.188 3.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.167 4.167 3 Si 0.765 3.235 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.205 1.205 7 C -0.566 4.566 8 H 0.063 0.937 9 C 0.128 3.872 10 N -0.328 5.328 11 C 0.074 3.926 12 C -0.090 4.090 13 C -0.209 4.209 14 C -0.246 4.246 15 C -0.119 4.119 16 O -0.092 6.092 17 C 0.296 3.704 18 O -0.437 6.437 19 C -0.196 4.196 20 C 0.300 3.700 21 N -0.399 5.399 22 O -0.439 6.439 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.048 0.952 26 H 0.143 0.857 27 H 0.102 0.898 28 H 0.163 0.837 29 H 0.183 0.817 30 H 0.249 0.751 31 H 0.164 0.836 32 H 0.151 0.849 33 H 0.250 0.750 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 3.177 -2.914 -2.045 4.771 hybrid contribution 0.227 1.613 -0.097 1.632 sum 3.404 -1.300 -2.142 4.226 Atomic orbital electron populations 1.69963 1.06672 1.27880 1.50884 1.25366 0.95281 1.01184 0.94879 0.85912 0.78602 0.80352 0.78608 1.20097 1.20925 1.20479 1.21490 0.92829 0.91321 1.50941 0.93743 1.19281 0.87130 0.82262 0.98541 1.48300 1.45073 1.35265 1.04175 1.19787 0.89510 0.96403 0.86899 1.23077 0.84423 0.99975 1.01502 1.21705 0.98280 0.97497 1.03428 1.22104 0.93106 1.03235 1.06203 1.24713 0.97092 0.91221 0.98885 1.84073 1.16533 1.48145 1.60420 1.20495 0.80999 0.82568 0.86298 1.90757 1.35074 1.30335 1.87521 1.21568 1.04720 1.02864 0.90446 1.20315 0.81096 0.83088 0.85463 1.43575 1.50189 1.40165 1.06020 1.90840 1.36326 1.31662 1.85064 0.92475 0.93692 0.95236 0.85715 0.89800 0.83722 0.81692 0.75053 0.83645 0.84874 0.75049 0.75948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.37 13.29 21.45 0.28 -46.09 16 2 C 0.03 1.64 5.46 84.65 0.46 2.10 16 3 Si 0.94 40.09 29.54 68.60 2.03 42.12 16 4 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.53 -25.26 9.04 25.60 0.23 -25.03 16 8 H 0.04 2.29 7.65 -2.91 -0.02 2.27 16 9 C 0.25 10.68 5.01 85.63 0.43 11.11 16 10 N -0.60 -24.38 2.44 -830.50 -2.03 -26.40 16 11 C 0.20 7.45 5.98 85.63 0.51 7.96 16 12 C -0.04 -1.55 6.90 24.83 0.17 -1.38 16 13 C -0.19 -7.14 10.40 22.19 0.23 -6.91 16 14 C -0.23 -7.50 10.91 22.19 0.24 -7.26 16 15 C -0.05 -1.67 12.09 66.97 0.81 -0.86 16 16 O -0.20 -7.92 10.65 -2.58 -0.03 -7.94 16 17 C 0.51 21.66 7.66 87.66 0.67 22.33 16 18 O -0.56 -27.96 13.76 20.41 0.28 -27.68 16 19 C -0.15 -5.17 4.74 29.10 0.14 -5.03 16 20 C 0.52 17.29 8.09 87.66 0.71 18.00 16 21 N -0.83 -17.50 8.87 -173.54 -1.54 -19.04 16 22 O -0.56 -25.17 15.02 20.41 0.31 -24.86 16 23 H 0.27 13.01 8.31 -92.71 -0.77 12.24 16 24 H 0.05 1.90 6.44 -2.38 -0.02 1.88 16 25 H 0.03 1.33 7.89 -2.39 -0.02 1.31 16 26 H 0.12 4.02 7.89 -2.39 -0.02 4.00 16 27 H 0.08 3.18 7.42 -2.39 -0.02 3.17 16 28 H 0.14 5.46 8.06 -2.91 -0.02 5.43 16 29 H 0.17 4.45 8.06 -2.91 -0.02 4.42 16 30 H 0.23 5.16 8.06 -2.91 -0.02 5.14 16 31 H 0.15 4.01 7.40 -2.38 -0.02 3.99 16 32 H 0.13 4.45 8.00 -2.39 -0.02 4.43 16 33 H 0.42 5.94 8.83 -92.71 -0.82 5.12 16 34 H 0.41 7.34 8.93 -92.70 -0.83 6.51 16 Total: -1.00 -71.87 304.11 3.42 -68.45 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -0.50 Total: 26.43 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 4.61 Total: 15.03 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -3.28 Total: -91.53 kcal Atomic # 8 Polarization: -61.05 SS G_CDS: 0.56 Total: -60.49 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Total: -71.87 3.42 -68.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353773555.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.442 kcal (2) G-P(sol) polarization free energy of solvation -71.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds