Wall clock time and date at job start Mon Mar 30 2020 04:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99635 * 2 1 4 4 H 1.48498 * 109.47306 * 240.00147 * 3 2 1 5 5 H 1.48502 * 109.47097 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46880 * 119.99976 * 3 2 1 7 7 C 1.37873 * 120.00564 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00364 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99877 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47230 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00031 * 89.43657 * 10 9 7 12 12 O 1.21711 * 120.00176 * 174.59002 * 11 10 9 13 13 C 1.46537 * 120.00194 * 354.86459 * 11 10 9 14 14 C 1.36571 * 125.29969 * 171.19042 * 13 11 10 15 15 C 1.37660 * 114.42306 * 179.85454 * 14 13 11 16 16 N 1.40737 * 122.46026 * 180.19905 * 15 14 13 17 17 C 1.34417 * 115.08122 * 0.43666 * 15 14 13 18 18 S 1.75818 * 109.95806 * 359.76261 * 17 15 14 19 19 C 1.46502 * 120.00048 * 269.43842 * 10 9 7 20 20 C 1.53001 * 117.49611 * 203.83591 * 19 10 9 21 21 C 1.52998 * 117.50335 * 135.17628 * 19 10 9 22 22 H 0.97000 * 120.00463 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46905 * 59.99668 * 9 7 2 24 24 H 1.09000 * 109.47023 * 300.00199 * 9 7 2 25 25 H 1.08001 * 122.78471 * 0.03644 * 14 13 11 26 26 H 0.97001 * 120.00107 * 180.23439 * 16 15 14 27 27 H 0.97004 * 119.99749 * 0.22994 * 16 15 14 28 28 H 1.08000 * 125.02385 * 179.74036 * 17 15 14 29 29 H 1.09003 * 115.54762 * 349.50216 * 19 10 9 30 30 H 1.08997 * 117.50228 * 359.97438 * 20 19 10 31 31 H 1.09002 * 117.49611 * 145.02230 * 20 19 10 32 32 H 1.08997 * 117.50153 * 214.97922 * 21 19 10 33 33 H 1.09004 * 117.49255 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.6499 -4.1173 1.1666 12 8 3.3627 -5.1038 1.1700 13 6 2.2724 -3.4819 2.4319 14 6 2.5167 -3.9921 3.6750 15 6 2.0670 -3.2058 4.7115 16 7 2.2333 -3.5677 6.0614 17 6 1.4529 -2.0694 4.3397 18 16 1.4275 -1.9471 2.5860 19 6 2.6698 -4.1774 -1.2692 20 6 3.1813 -5.6193 -1.2549 21 6 4.1672 -4.4586 -1.4092 22 1 -0.4851 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6249 -2.5571 0.8897 25 1 3.0234 -4.9330 3.8317 26 1 1.8992 -2.9879 6.7636 27 1 2.6820 -4.3969 6.2894 28 1 1.0363 -1.3394 5.0179 29 1 2.1355 -3.8417 -2.1580 30 1 3.1710 -6.1475 -0.3015 31 1 2.9839 -6.2321 -2.1345 32 1 4.6180 -4.3083 -2.3901 33 1 4.8053 -4.2229 -0.5574 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385186590.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:42 Heat of formation + Delta-G solvation = 43.146737 kcal Electronic energy + Delta-G solvation = -18242.572999 eV Core-core repulsion = 15396.545646 eV Total energy + Delta-G solvation = -2846.027353 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.59802 -37.57634 -35.64234 -34.43510 -32.46016 -31.86898 -27.97261 -27.31797 -24.46999 -23.02835 -21.87418 -21.79044 -19.39001 -18.24706 -17.09537 -16.77800 -16.29341 -15.46179 -15.26895 -14.57892 -14.39213 -14.24683 -13.49293 -13.18074 -12.71650 -12.61824 -12.39966 -12.29350 -11.83742 -11.50561 -11.22619 -10.95949 -10.82303 -10.64093 -10.33921 -9.84008 -9.77376 -9.64150 -9.18636 -8.90956 -8.64183 -7.91375 -7.51849 -6.75493 -6.33653 -4.36174 1.35290 2.60856 3.02596 3.20299 3.23539 3.25186 3.29176 3.72754 3.92079 4.22044 4.54596 4.60755 5.00410 5.22553 5.48637 5.63743 5.67490 5.80991 6.12285 6.17572 6.23031 6.40660 6.50646 6.61235 6.71232 6.85491 6.88704 6.97383 7.49365 7.61060 7.79034 7.89271 8.18343 8.24911 8.63464 8.92031 9.23516 10.70266 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.012959 B = 0.011181 C = 0.006613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.211571 B = 2503.656430 C = 4232.804168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.076 3.924 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.069 0.931 9 C 0.224 3.776 10 N -0.566 5.566 11 C 0.588 3.412 12 O -0.558 6.558 13 C -0.254 4.254 14 C -0.124 4.124 15 C 0.161 3.839 16 N -0.888 5.888 17 C -0.387 4.387 18 S 0.352 5.648 19 C 0.092 3.908 20 C -0.201 4.201 21 C -0.188 4.188 22 H 0.270 0.730 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.133 0.867 26 H 0.391 0.609 27 H 0.389 0.611 28 H 0.143 0.857 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.601 -4.121 4.133 6.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.577 4.577 8 H 0.087 0.913 9 C 0.102 3.898 10 N -0.294 5.294 11 C 0.378 3.622 12 O -0.441 6.441 13 C -0.376 4.376 14 C -0.164 4.164 15 C 0.052 3.948 16 N -0.433 5.433 17 C -0.529 4.529 18 S 0.627 5.373 19 C -0.014 4.014 20 C -0.238 4.238 21 C -0.227 4.227 22 H 0.080 0.920 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.151 0.849 26 H 0.218 0.782 27 H 0.216 0.784 28 H 0.161 0.839 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.139 -3.331 3.065 4.667 hybrid contribution 1.017 0.037 1.437 1.761 sum 2.156 -3.293 4.502 5.980 Atomic orbital electron populations 1.69901 1.05895 1.27976 1.47561 1.24899 0.94883 0.99226 0.93993 0.86624 0.79895 0.82340 0.79394 1.19808 1.20849 1.19480 1.21441 0.94248 0.90011 1.51962 0.91270 1.19800 0.87996 0.83142 0.98900 1.47479 1.44250 1.34348 1.03322 1.17066 0.79723 0.82820 0.82605 1.90574 1.39956 1.26457 1.87156 1.24392 1.13078 1.03582 0.96555 1.19748 1.05355 1.01498 0.89814 1.16366 0.99362 0.93871 0.85215 1.42148 1.70684 1.27397 1.03074 1.26623 1.15226 1.03225 1.07777 1.86981 1.47529 1.12469 0.90326 1.21492 0.95520 0.96610 0.87736 1.23806 1.03544 0.91906 1.04573 1.23146 0.93462 1.03862 1.02226 0.91976 0.93165 0.93255 0.84937 0.78206 0.78389 0.83880 0.85540 0.85079 0.90064 0.89285 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.01 13.29 55.43 0.74 -21.28 16 2 C 0.08 1.85 5.05 -17.82 -0.09 1.76 16 3 Si 0.89 19.45 29.54 -169.99 -5.02 14.43 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.53 -12.98 6.98 -34.44 -0.24 -13.22 16 8 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.22 5.12 4.72 -5.19 -0.02 5.10 16 10 N -0.57 -12.21 2.84 -169.05 -0.48 -12.69 16 11 C 0.59 13.04 7.31 -12.92 -0.09 12.94 16 12 O -0.56 -12.70 12.54 5.18 0.06 -12.63 16 13 C -0.25 -5.37 6.18 -36.84 -0.23 -5.60 16 14 C -0.12 -2.37 9.87 -40.39 -0.40 -2.77 16 15 C 0.16 2.83 6.73 -85.33 -0.57 2.26 16 16 N -0.89 -11.89 9.17 31.55 0.29 -11.60 16 17 C -0.39 -7.10 11.15 29.38 0.33 -6.78 16 18 S 0.35 7.36 16.18 -107.50 -1.74 5.62 16 19 C 0.09 1.74 6.63 -67.93 -0.45 1.29 16 20 C -0.20 -3.48 9.67 -26.69 -0.26 -3.74 16 21 C -0.19 -3.34 9.83 -26.70 -0.26 -3.60 16 22 H 0.27 6.51 8.31 -40.82 -0.34 6.18 16 23 H 0.05 1.19 8.03 -51.93 -0.42 0.77 16 24 H 0.05 1.17 4.58 -23.51 -0.11 1.07 16 25 H 0.13 2.40 8.05 -52.49 -0.42 1.97 16 26 H 0.39 4.43 8.90 -40.82 -0.36 4.07 16 27 H 0.39 4.44 8.91 -40.82 -0.36 4.08 16 28 H 0.14 2.35 8.06 -52.49 -0.42 1.92 16 29 H 0.13 2.19 8.09 -51.93 -0.42 1.77 16 30 H 0.13 2.58 5.36 -51.93 -0.28 2.30 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 33 H 0.09 1.86 7.37 -51.93 -0.38 1.48 16 LS Contribution 288.74 15.07 4.35 4.35 Total: -1.00 -26.64 288.74 -7.66 -34.30 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -3.57 Total: 11.86 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -2.29 Total: -12.35 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.55 Total: -45.56 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.06 Total: -12.63 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Atomic # 16 Polarization: 7.36 SS G_CDS: -1.74 Total: 5.62 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.64 -7.66 -34.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385186590.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.445 kcal (2) G-P(sol) polarization free energy of solvation -26.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds