Wall clock time and date at job start Mon Mar 30 2020 04:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99635 * 2 1 4 4 H 1.48498 * 109.47306 * 240.00147 * 3 2 1 5 5 H 1.48502 * 109.47097 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46880 * 119.99976 * 3 2 1 7 7 C 1.37873 * 120.00564 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00364 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99877 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47230 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00031 * 89.43657 * 10 9 7 12 12 O 1.21711 * 120.00176 * 174.59002 * 11 10 9 13 13 C 1.46537 * 120.00194 * 354.86459 * 11 10 9 14 14 C 1.36571 * 125.29969 * 171.19042 * 13 11 10 15 15 C 1.37660 * 114.42306 * 179.85454 * 14 13 11 16 16 N 1.40737 * 122.46026 * 180.19905 * 15 14 13 17 17 C 1.34417 * 115.08122 * 0.43666 * 15 14 13 18 18 S 1.75818 * 109.95806 * 359.76261 * 17 15 14 19 19 C 1.46502 * 120.00048 * 269.43842 * 10 9 7 20 20 C 1.53001 * 117.49611 * 203.83591 * 19 10 9 21 21 C 1.52998 * 117.50335 * 135.17628 * 19 10 9 22 22 H 0.97000 * 120.00463 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46905 * 59.99668 * 9 7 2 24 24 H 1.09000 * 109.47023 * 300.00199 * 9 7 2 25 25 H 1.08001 * 122.78471 * 0.03644 * 14 13 11 26 26 H 0.97001 * 120.00107 * 180.23439 * 16 15 14 27 27 H 0.97004 * 119.99749 * 0.22994 * 16 15 14 28 28 H 1.08000 * 125.02385 * 179.74036 * 17 15 14 29 29 H 1.09003 * 115.54762 * 349.50216 * 19 10 9 30 30 H 1.08997 * 117.50228 * 359.97438 * 20 19 10 31 31 H 1.09002 * 117.49611 * 145.02230 * 20 19 10 32 32 H 1.08997 * 117.50153 * 214.97922 * 21 19 10 33 33 H 1.09004 * 117.49255 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.6499 -4.1173 1.1666 12 8 3.3627 -5.1038 1.1700 13 6 2.2724 -3.4819 2.4319 14 6 2.5167 -3.9921 3.6750 15 6 2.0670 -3.2058 4.7115 16 7 2.2333 -3.5677 6.0614 17 6 1.4529 -2.0694 4.3397 18 16 1.4275 -1.9471 2.5860 19 6 2.6698 -4.1774 -1.2692 20 6 3.1813 -5.6193 -1.2549 21 6 4.1672 -4.4586 -1.4092 22 1 -0.4851 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6249 -2.5571 0.8897 25 1 3.0234 -4.9330 3.8317 26 1 1.8992 -2.9879 6.7636 27 1 2.6820 -4.3969 6.2894 28 1 1.0363 -1.3394 5.0179 29 1 2.1355 -3.8417 -2.1580 30 1 3.1710 -6.1475 -0.3015 31 1 2.9839 -6.2321 -2.1345 32 1 4.6180 -4.3083 -2.3901 33 1 4.8053 -4.2229 -0.5574 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385186590.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:41 Heat of formation + Delta-G solvation = 27.052361 kcal Electronic energy + Delta-G solvation = -18243.270903 eV Core-core repulsion = 15396.545646 eV Total energy + Delta-G solvation = -2846.725257 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.22936 -39.02798 -37.22280 -36.12550 -34.19745 -33.26630 -29.43506 -29.13593 -26.03308 -24.83738 -23.35999 -23.20973 -20.90251 -19.77511 -18.78096 -18.48584 -17.78378 -16.92316 -16.81276 -16.32914 -15.93988 -15.79363 -14.99702 -14.68699 -14.36680 -14.32130 -13.96172 -13.95599 -13.28803 -13.15619 -12.92927 -12.64217 -12.41399 -12.14777 -12.13349 -11.52275 -11.25797 -11.12049 -10.74634 -10.62817 -10.39332 -9.50801 -9.13653 -8.19151 -8.17755 -6.26139 -0.21840 1.01975 1.42944 1.47467 1.52818 1.55471 1.73533 2.13520 2.32910 2.43893 3.11914 3.14119 3.31001 3.72256 4.03142 4.19215 4.23837 4.32259 4.66289 4.70379 4.84488 4.86263 4.93391 5.09546 5.14805 5.23198 5.42454 5.45945 5.68701 5.89914 5.94664 6.45452 6.67070 6.75908 7.21086 7.23130 7.36535 8.84372 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.012959 B = 0.011181 C = 0.006613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.211571 B = 2503.656430 C = 4232.804168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.048 3.952 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.053 0.947 9 C 0.233 3.767 10 N -0.570 5.570 11 C 0.579 3.421 12 O -0.572 6.572 13 C -0.276 4.276 14 C -0.115 4.115 15 C 0.167 3.833 16 N -0.871 5.871 17 C -0.379 4.379 18 S 0.301 5.699 19 C 0.065 3.935 20 C -0.184 4.184 21 C -0.182 4.182 22 H 0.272 0.728 23 H 0.038 0.962 24 H 0.047 0.953 25 H 0.143 0.857 26 H 0.405 0.595 27 H 0.402 0.598 28 H 0.165 0.835 29 H 0.141 0.859 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.038 -4.335 4.915 6.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.156 4.156 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.578 4.578 8 H 0.071 0.929 9 C 0.110 3.890 10 N -0.297 5.297 11 C 0.370 3.630 12 O -0.457 6.457 13 C -0.398 4.398 14 C -0.156 4.156 15 C 0.056 3.944 16 N -0.417 5.417 17 C -0.522 4.522 18 S 0.574 5.426 19 C -0.040 4.040 20 C -0.222 4.222 21 C -0.221 4.221 22 H 0.081 0.919 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.161 0.839 26 H 0.234 0.766 27 H 0.231 0.769 28 H 0.183 0.817 29 H 0.159 0.841 30 H 0.126 0.874 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.587 -3.557 3.855 5.480 hybrid contribution 0.909 0.002 1.326 1.608 sum 2.496 -3.555 5.181 6.761 Atomic orbital electron populations 1.69959 1.06692 1.28495 1.48413 1.25335 0.95352 1.01145 0.93727 0.85949 0.79029 0.79939 0.79109 1.19838 1.20230 1.19567 1.21368 0.93344 0.90861 1.52212 0.92898 1.19591 0.87988 0.83240 0.98170 1.47504 1.43937 1.33981 1.04254 1.17293 0.79737 0.82839 0.83155 1.90566 1.40641 1.26968 1.87487 1.24441 1.14385 1.03979 0.96964 1.20015 1.04240 1.01753 0.89628 1.16359 0.98229 0.93121 0.86682 1.42066 1.70017 1.28110 1.01552 1.26621 1.15435 1.04072 1.06064 1.86996 1.49006 1.13471 0.93078 1.21855 0.96710 0.98151 0.87250 1.23740 1.02371 0.91202 1.04857 1.23157 0.92388 1.03778 1.02749 0.91874 0.94362 0.93602 0.83887 0.76595 0.76890 0.81705 0.84144 0.87382 0.86627 0.86255 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.37 13.29 21.45 0.28 -45.09 16 2 C 0.05 2.36 5.05 84.65 0.43 2.79 16 3 Si 0.93 39.66 29.54 68.60 2.03 41.69 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.54 -26.46 6.98 25.60 0.18 -26.28 16 8 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 9 C 0.23 10.89 4.72 85.64 0.40 11.30 16 10 N -0.57 -24.92 2.84 -806.98 -2.29 -27.21 16 11 C 0.58 26.03 7.31 86.41 0.63 26.66 16 12 O -0.57 -26.26 12.54 -4.38 -0.05 -26.31 16 13 C -0.28 -11.72 6.18 24.05 0.15 -11.57 16 14 C -0.12 -4.27 9.87 21.74 0.21 -4.06 16 15 C 0.17 5.49 6.73 36.70 0.25 5.74 16 16 N -0.87 -20.47 9.17 -54.09 -0.50 -20.97 16 17 C -0.38 -13.30 11.15 66.95 0.75 -12.55 16 18 S 0.30 12.64 16.18 -56.49 -0.91 11.72 16 19 C 0.06 2.42 6.63 44.99 0.30 2.72 16 20 C -0.18 -6.16 9.67 30.62 0.30 -5.86 16 21 C -0.18 -6.29 9.83 30.62 0.30 -5.99 16 22 H 0.27 13.11 8.31 -92.71 -0.77 12.34 16 23 H 0.04 1.86 8.03 -2.39 -0.02 1.84 16 24 H 0.05 2.25 4.58 -20.46 -0.09 2.15 16 25 H 0.14 4.95 8.05 -2.91 -0.02 4.93 16 26 H 0.40 7.70 8.90 -92.71 -0.83 6.87 16 27 H 0.40 7.80 8.91 -92.71 -0.83 6.98 16 28 H 0.17 4.98 8.06 -2.91 -0.02 4.96 16 29 H 0.14 4.77 8.09 -2.39 -0.02 4.75 16 30 H 0.11 4.21 5.36 -2.44 -0.01 4.20 16 31 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 32 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 33 H 0.07 2.71 7.37 -2.38 -0.02 2.69 16 Total: -1.00 -56.64 288.74 1.88 -54.76 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: -0.57 Total: 28.50 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: 3.89 Total: -17.09 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -2.50 Total: -93.26 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.05 Total: -26.31 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Atomic # 16 Polarization: 12.64 SS G_CDS: -0.91 Total: 11.72 kcal Total: -56.64 1.88 -54.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385186590.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.812 kcal (2) G-P(sol) polarization free energy of solvation -56.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds