Wall clock time and date at job start Mon Mar 30 2020 05:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.64501 * 61.69776 * 9 7 2 11 11 C 1.54602 * 110.72291 * 298.54554 * 9 7 2 12 12 C 1.53988 * 105.13912 * 219.68223 * 11 9 7 13 13 N 1.47898 * 107.06159 * 358.77756 * 12 11 9 14 14 C 1.46899 * 111.00343 * 145.83929 * 13 12 11 15 15 C 1.50697 * 109.47023 * 69.87487 * 14 13 12 16 16 C 1.34518 * 125.79217 * 89.99858 * 15 14 13 17 17 C 1.41383 * 106.84352 * 180.02562 * 16 15 14 18 18 C 1.34513 * 106.83676 * 0.02562 * 17 16 15 19 19 N 1.48040 * 125.78163 * 180.02562 * 18 17 16 20 20 O 1.21795 * 120.00268 * 359.97438 * 19 18 17 21 21 O 1.21806 * 119.99541 * 180.02562 * 19 18 17 22 22 O 1.34294 * 108.42478 * 359.73756 * 18 17 16 23 23 C 1.48540 * 105.81886 * 25.32670 * 13 12 11 24 24 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 25 25 H 1.08994 * 110.30635 * 338.60370 * 11 9 7 26 26 H 1.09004 * 110.30701 * 100.76750 * 11 9 7 27 27 H 1.09001 * 109.91593 * 118.12934 * 12 11 9 28 28 H 1.08996 * 109.91824 * 239.22614 * 12 11 9 29 29 H 1.09001 * 109.47157 * 189.87489 * 14 13 12 30 30 H 1.08999 * 109.46923 * 309.87741 * 14 13 12 31 31 H 1.08006 * 126.57361 * 0.02562 * 16 15 14 32 32 H 1.08003 * 126.57515 * 180.02562 * 17 16 15 33 33 H 1.09002 * 110.66781 * 202.35573 * 23 13 12 34 34 H 1.09001 * 110.66375 * 79.23149 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6398 -2.5900 -0.8984 11 6 0.3797 -2.6277 1.2700 12 6 0.5077 -4.1014 1.6980 13 7 1.3771 -4.7679 0.7044 14 6 2.1993 -5.8076 1.3376 15 6 1.3207 -6.9594 1.7526 16 6 1.0176 -8.0299 0.9966 17 6 0.1720 -8.8543 1.7740 18 6 0.0084 -8.2378 2.9584 19 7 -0.8027 -8.7395 4.0906 20 8 -1.3952 -9.7992 3.9929 21 8 -0.8782 -8.0921 5.1196 22 8 0.7108 -7.0933 2.9417 23 6 2.2271 -3.6957 0.1263 24 1 -0.4850 -0.8401 0.0004 25 1 0.7560 -1.9717 2.0548 26 1 -0.6591 -2.3889 1.0420 27 1 0.9602 -4.1626 2.6877 28 1 -0.4757 -4.5714 1.7098 29 1 2.9491 -6.1595 0.6290 30 1 2.6952 -5.3940 2.2157 31 1 1.3555 -8.2227 -0.0109 32 1 -0.2598 -9.7978 1.4743 33 1 2.6044 -3.9899 -0.8531 34 1 3.0494 -3.4519 0.7990 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397567642.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:22 Heat of formation + Delta-G solvation = 24.360355 kcal Electronic energy + Delta-G solvation = -19773.653504 eV Core-core repulsion = 16484.058642 eV Total energy + Delta-G solvation = -3289.594862 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.57971 -42.10134 -38.49750 -36.90620 -34.25756 -33.75505 -32.03015 -29.97768 -28.50175 -27.21665 -24.70768 -23.86098 -22.64606 -21.48621 -20.53183 -19.92934 -19.72932 -18.87647 -18.16524 -17.15165 -16.56997 -16.14896 -15.37798 -14.75610 -14.27358 -14.03995 -13.75368 -13.60935 -13.23268 -12.89285 -12.08385 -11.95645 -11.89885 -11.67280 -11.50915 -11.47114 -11.08193 -10.84056 -10.72613 -10.67297 -10.19416 -9.99064 -9.65075 -9.40656 -8.61267 -8.44348 -8.27677 -6.42815 -4.17245 -0.34371 0.36717 1.28030 1.90745 2.60119 3.38406 3.41386 3.54278 4.06503 4.14429 4.28290 4.46939 4.64222 4.93433 4.95456 5.17894 5.27436 5.29130 5.39779 5.64084 5.68612 5.85479 5.97293 6.02818 6.15466 6.19284 6.44628 6.67724 6.74062 7.05929 7.15799 7.18297 7.35846 7.52100 8.11092 8.33085 8.78320 9.55815 10.95518 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.039635 B = 0.003821 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.268719 B = 7326.370917 C = 7709.626406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 1.072 2.928 4 H -0.290 1.290 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.600 4.600 8 H 0.051 0.949 9 C 0.038 3.962 10 H 0.031 0.969 11 C -0.121 4.121 12 C 0.034 3.966 13 N -0.518 5.518 14 C 0.112 3.888 15 C 0.094 3.906 16 C -0.206 4.206 17 C -0.072 4.072 18 C -0.003 4.003 19 N 0.070 4.930 20 O -0.137 6.137 21 O -0.139 6.139 22 O -0.148 6.148 23 C 0.050 3.950 24 H 0.274 0.726 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.037 0.963 28 H 0.062 0.938 29 H 0.118 0.882 30 H 0.063 0.937 31 H 0.176 0.824 32 H 0.178 0.822 33 H 0.072 0.928 34 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.410 -16.143 2.303 16.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.183 4.183 3 Si 0.901 3.099 4 H -0.216 1.216 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.638 4.638 8 H 0.070 0.930 9 C 0.019 3.981 10 H 0.049 0.951 11 C -0.159 4.159 12 C -0.094 4.094 13 N -0.243 5.243 14 C -0.016 4.016 15 C 0.040 3.960 16 C -0.226 4.226 17 C -0.093 4.093 18 C -0.136 4.136 19 N 0.590 4.410 20 O -0.351 6.351 21 O -0.358 6.358 22 O -0.044 6.044 23 C -0.076 4.076 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.135 0.865 30 H 0.081 0.919 31 H 0.194 0.806 32 H 0.196 0.804 33 H 0.090 0.910 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.303 -14.331 1.612 14.795 hybrid contribution 0.345 -1.574 0.961 1.876 sum 3.648 -15.905 2.573 16.520 Atomic orbital electron populations 1.70737 1.06885 1.31234 1.45755 1.25788 0.96519 1.02562 0.93449 0.83489 0.74431 0.74918 0.77052 1.21554 1.21352 1.21285 1.21944 0.94089 0.91113 1.56669 0.93047 1.19714 0.92602 0.92548 0.93268 0.95135 1.22652 1.00881 0.91663 1.00749 1.22990 0.96653 0.96850 0.92900 1.64922 1.18825 1.11535 1.28997 1.21030 0.92076 0.89117 0.99394 1.23251 0.94143 0.97761 0.80848 1.21778 1.03495 0.94710 1.02665 1.21833 0.96759 1.01089 0.89647 1.22172 1.07096 0.92792 0.91509 1.42172 0.98763 1.00101 1.00000 1.94595 1.43567 1.09166 1.87727 1.94639 1.67160 1.57271 1.16688 1.83975 1.49788 1.34486 1.36121 1.23331 0.95662 0.90551 0.98080 0.91444 0.91728 0.92502 0.94470 0.91921 0.86457 0.91925 0.80617 0.80414 0.90974 0.93781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.39 13.42 55.43 0.74 -25.64 16 2 C 0.02 0.60 5.33 -17.82 -0.10 0.50 16 3 Si 1.07 24.28 29.90 -169.99 -5.08 19.20 16 4 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.60 -15.84 8.42 -34.44 -0.29 -16.13 16 8 H 0.05 1.35 7.78 -52.49 -0.41 0.94 16 9 C 0.04 0.89 2.62 -89.91 -0.24 0.65 16 10 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 11 C -0.12 -2.67 5.34 -25.37 -0.14 -2.81 16 12 C 0.03 0.62 6.17 -2.76 -0.02 0.60 16 13 N -0.52 -8.57 5.26 -231.90 -1.22 -9.79 16 14 C 0.11 1.40 5.30 -4.98 -0.03 1.38 16 15 C 0.09 1.16 6.33 -35.62 -0.23 0.94 16 16 C -0.21 -2.08 10.81 -39.70 -0.43 -2.50 16 17 C -0.07 -0.74 10.57 -39.70 -0.42 -1.16 16 18 C 0.00 -0.04 8.24 -10.94 -0.09 -0.13 16 19 N 0.07 1.00 4.46 32.63 0.15 1.15 16 20 O -0.14 -1.86 19.01 -29.46 -0.56 -2.42 16 21 O -0.14 -2.18 19.26 -32.38 -0.62 -2.80 16 22 O -0.15 -2.14 10.65 0.98 0.01 -2.13 16 23 C 0.05 0.93 5.95 -1.90 -0.01 0.92 16 24 H 0.27 7.84 5.53 -40.82 -0.23 7.61 16 25 H 0.06 1.54 7.84 -51.93 -0.41 1.13 16 26 H 0.06 1.31 6.97 -51.93 -0.36 0.94 16 27 H 0.04 0.66 7.57 -51.93 -0.39 0.26 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.12 1.13 8.11 -51.93 -0.42 0.71 16 30 H 0.06 0.78 7.82 -51.93 -0.41 0.38 16 31 H 0.18 1.28 8.06 -52.48 -0.42 0.86 16 32 H 0.18 1.29 8.06 -52.48 -0.42 0.86 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.04 0.82 7.92 -51.93 -0.41 0.41 16 LS Contribution 298.36 15.07 4.50 4.50 Total: -1.00 -29.49 298.36 -8.01 -37.50 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -3.94 Total: -1.83 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -1.98 Total: -17.73 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: -0.33 Total: -34.28 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -1.17 Total: -7.36 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -5.08 Total: 19.20 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.49 -8.01 -37.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397567642.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.860 kcal (2) G-P(sol) polarization free energy of solvation -29.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds