Wall clock time and date at job start Mon Mar 30 2020 05:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.64501 * 61.69776 * 9 7 2 11 11 C 1.54602 * 110.72291 * 298.54554 * 9 7 2 12 12 C 1.53988 * 105.13912 * 219.68223 * 11 9 7 13 13 N 1.47898 * 107.06159 * 358.77756 * 12 11 9 14 14 C 1.46899 * 111.00343 * 145.83929 * 13 12 11 15 15 C 1.50697 * 109.47023 * 69.87487 * 14 13 12 16 16 C 1.34518 * 125.79217 * 89.99858 * 15 14 13 17 17 C 1.41383 * 106.84352 * 180.02562 * 16 15 14 18 18 C 1.34513 * 106.83676 * 0.02562 * 17 16 15 19 19 N 1.48040 * 125.78163 * 180.02562 * 18 17 16 20 20 O 1.21795 * 120.00268 * 359.97438 * 19 18 17 21 21 O 1.21806 * 119.99541 * 180.02562 * 19 18 17 22 22 O 1.34294 * 108.42478 * 359.73756 * 18 17 16 23 23 C 1.48540 * 105.81886 * 25.32670 * 13 12 11 24 24 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 25 25 H 1.08994 * 110.30635 * 338.60370 * 11 9 7 26 26 H 1.09004 * 110.30701 * 100.76750 * 11 9 7 27 27 H 1.09001 * 109.91593 * 118.12934 * 12 11 9 28 28 H 1.08996 * 109.91824 * 239.22614 * 12 11 9 29 29 H 1.09001 * 109.47157 * 189.87489 * 14 13 12 30 30 H 1.08999 * 109.46923 * 309.87741 * 14 13 12 31 31 H 1.08006 * 126.57361 * 0.02562 * 16 15 14 32 32 H 1.08003 * 126.57515 * 180.02562 * 17 16 15 33 33 H 1.09002 * 110.66781 * 202.35573 * 23 13 12 34 34 H 1.09001 * 110.66375 * 79.23149 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6398 -2.5900 -0.8984 11 6 0.3797 -2.6277 1.2700 12 6 0.5077 -4.1014 1.6980 13 7 1.3771 -4.7679 0.7044 14 6 2.1993 -5.8076 1.3376 15 6 1.3207 -6.9594 1.7526 16 6 1.0176 -8.0299 0.9966 17 6 0.1720 -8.8543 1.7740 18 6 0.0084 -8.2378 2.9584 19 7 -0.8027 -8.7395 4.0906 20 8 -1.3952 -9.7992 3.9929 21 8 -0.8782 -8.0921 5.1196 22 8 0.7108 -7.0933 2.9417 23 6 2.2271 -3.6957 0.1263 24 1 -0.4850 -0.8401 0.0004 25 1 0.7560 -1.9717 2.0548 26 1 -0.6591 -2.3889 1.0420 27 1 0.9602 -4.1626 2.6877 28 1 -0.4757 -4.5714 1.7098 29 1 2.9491 -6.1595 0.6290 30 1 2.6952 -5.3940 2.2157 31 1 1.3555 -8.2227 -0.0109 32 1 -0.2598 -9.7978 1.4743 33 1 2.6044 -3.9899 -0.8531 34 1 3.0494 -3.4519 0.7990 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397567642.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:22 Heat of formation + Delta-G solvation = 5.905400 kcal Electronic energy + Delta-G solvation = -19774.453771 eV Core-core repulsion = 16484.058642 eV Total energy + Delta-G solvation = -3290.395129 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.51534 -43.15093 -40.00251 -37.97178 -35.86744 -34.76324 -33.45102 -31.31106 -30.16299 -28.46131 -26.24502 -25.36698 -23.55862 -22.59342 -21.98679 -21.46786 -20.83320 -19.93564 -19.21457 -19.01266 -17.62090 -17.34097 -16.83083 -16.17751 -15.69670 -15.20517 -15.07232 -14.84076 -14.37773 -14.24499 -13.73743 -13.52779 -13.10367 -12.97220 -12.83180 -12.66477 -12.57962 -12.41800 -12.36148 -11.92176 -11.78842 -11.58876 -11.43680 -10.62983 -10.51648 -10.34181 -9.62721 -8.58981 -6.33682 -1.37034 -0.58113 0.30059 1.07555 1.54303 1.62252 1.66663 1.77631 2.56699 2.95042 3.17622 3.21939 3.36202 3.75142 3.80409 3.91451 4.02617 4.15777 4.28206 4.38900 4.44462 4.49642 4.59598 4.81663 4.88481 4.94556 4.96403 5.02021 5.25632 5.30686 5.52473 5.62331 5.86359 6.10604 6.22741 6.28388 6.64382 7.47829 8.79855 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.039635 B = 0.003821 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.268719 B = 7326.370917 C = 7709.626406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.030 4.030 3 Si 1.117 2.883 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.282 1.282 7 C -0.606 4.606 8 H 0.053 0.947 9 C 0.024 3.976 10 H 0.003 0.997 11 C -0.113 4.113 12 C 0.047 3.953 13 N -0.516 5.516 14 C 0.112 3.888 15 C 0.077 3.923 16 C -0.185 4.185 17 C -0.045 4.045 18 C -0.031 4.031 19 N 0.070 4.930 20 O -0.107 6.107 21 O -0.205 6.205 22 O -0.178 6.178 23 C 0.064 3.936 24 H 0.263 0.737 25 H 0.039 0.961 26 H 0.035 0.965 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.157 0.843 30 H 0.063 0.937 31 H 0.213 0.787 32 H 0.214 0.786 33 H 0.091 0.909 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.048 -18.129 0.928 18.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.229 4.229 3 Si 0.939 3.061 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.208 1.208 7 C -0.645 4.645 8 H 0.071 0.929 9 C 0.005 3.995 10 H 0.021 0.979 11 C -0.152 4.152 12 C -0.081 4.081 13 N -0.240 5.240 14 C -0.015 4.015 15 C 0.024 3.976 16 C -0.205 4.205 17 C -0.066 4.066 18 C -0.164 4.164 19 N 0.586 4.414 20 O -0.331 6.331 21 O -0.408 6.408 22 O -0.075 6.075 23 C -0.062 4.062 24 H 0.074 0.926 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.174 0.826 30 H 0.081 0.919 31 H 0.229 0.771 32 H 0.231 0.769 33 H 0.110 0.890 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.971 -16.248 0.332 16.995 hybrid contribution -0.167 -1.103 1.263 1.685 sum 4.804 -17.351 1.595 18.074 Atomic orbital electron populations 1.70848 1.07978 1.30683 1.48307 1.27156 0.96578 1.06318 0.92851 0.82927 0.74480 0.71520 0.77141 1.19294 1.21142 1.20793 1.22338 0.94393 0.92501 1.55236 0.92886 1.19707 0.93543 0.93883 0.92416 0.97903 1.22428 0.99200 0.94080 0.99530 1.22778 0.97552 0.94170 0.93598 1.64842 1.19082 1.11237 1.28884 1.21199 0.92109 0.87993 1.00244 1.23386 0.94727 0.98645 0.80869 1.22252 1.01708 0.93036 1.03484 1.22396 0.94902 1.01578 0.87703 1.22382 1.08486 0.93700 0.91842 1.42349 0.98803 0.99997 1.00300 1.94543 1.42382 1.08641 1.87514 1.94652 1.69689 1.58268 1.18161 1.83930 1.50715 1.35438 1.37455 1.23090 0.94452 0.89218 0.99437 0.92648 0.94221 0.94577 0.93907 0.91815 0.82582 0.91873 0.77051 0.76921 0.89040 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.15 13.42 21.45 0.29 -55.86 16 2 C -0.03 -1.68 5.33 84.65 0.45 -1.22 16 3 Si 1.12 48.81 29.90 68.60 2.05 50.86 16 4 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.61 -32.23 8.42 25.60 0.22 -32.01 16 8 H 0.05 2.74 7.78 -2.91 -0.02 2.72 16 9 C 0.02 1.12 2.62 -10.33 -0.03 1.10 16 10 H 0.00 0.15 8.08 -2.39 -0.02 0.13 16 11 C -0.11 -5.19 5.34 31.47 0.17 -5.02 16 12 C 0.05 1.71 6.17 86.45 0.53 2.25 16 13 N -0.52 -15.94 5.26 -887.59 -4.66 -20.61 16 14 C 0.11 2.43 5.30 85.56 0.45 2.88 16 15 C 0.08 1.67 6.33 24.83 0.16 1.82 16 16 C -0.19 -2.84 10.81 22.19 0.24 -2.60 16 17 C -0.04 -0.74 10.57 22.19 0.23 -0.50 16 18 C -0.03 -0.78 8.24 81.07 0.67 -0.12 16 19 N 0.07 1.99 4.46 -154.75 -0.69 1.30 16 20 O -0.11 -2.73 19.01 18.89 0.36 -2.37 16 21 O -0.21 -6.77 19.26 21.66 0.42 -6.35 16 22 O -0.18 -4.93 10.65 2.10 0.02 -4.91 16 23 C 0.06 2.29 5.95 86.65 0.52 2.81 16 24 H 0.26 15.76 5.53 -92.71 -0.51 15.24 16 25 H 0.04 1.96 7.84 -2.39 -0.02 1.94 16 26 H 0.04 1.75 6.97 -2.39 -0.02 1.73 16 27 H 0.04 1.50 7.57 -2.39 -0.02 1.48 16 28 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.16 2.21 8.11 -2.39 -0.02 2.19 16 30 H 0.06 1.41 7.82 -2.39 -0.02 1.39 16 31 H 0.21 1.70 8.06 -2.91 -0.02 1.68 16 32 H 0.21 1.91 8.06 -2.91 -0.02 1.88 16 33 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 34 H 0.05 1.64 7.92 -2.39 -0.02 1.63 16 Total: -1.00 -67.03 298.36 2.76 -64.27 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: 1.37 Total: 4.29 kcal Atomic # 6 Polarization: -34.23 SS G_CDS: 3.61 Total: -30.62 kcal Atomic # 7 Polarization: -70.10 SS G_CDS: -5.07 Total: -75.16 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.80 Total: -13.63 kcal Atomic # 14 Polarization: 48.81 SS G_CDS: 2.05 Total: 50.86 kcal Total: -67.03 2.76 -64.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397567642.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.177 kcal (2) G-P(sol) polarization free energy of solvation -67.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds