Wall clock time and date at job start Mon Mar 30 2020 05:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.63989 * 59.30207 * 9 7 2 11 11 C 1.55160 * 110.71841 * 182.44384 * 9 7 2 12 12 C 1.55123 * 101.48463 * 153.73555 * 11 9 7 13 13 N 1.47429 * 104.94030 * 323.21969 * 12 11 9 14 14 C 1.34776 * 125.64942 * 203.96554 * 13 12 11 15 15 O 1.21584 * 120.00252 * 180.02562 * 14 13 12 16 16 N 1.34784 * 119.99690 * 0.04536 * 14 13 12 17 17 C 1.46493 * 119.99877 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.47322 * 180.02562 * 17 16 14 19 19 F 1.39904 * 109.47447 * 59.99773 * 18 17 16 20 20 F 1.39907 * 109.47654 * 180.02562 * 18 17 16 21 21 F 1.39903 * 109.47067 * 299.99975 * 18 17 16 22 22 C 1.47023 * 108.70481 * 24.00475 * 13 12 11 23 23 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 24 24 H 1.09000 * 111.00253 * 271.93589 * 11 9 7 25 25 H 1.08994 * 111.00381 * 35.79218 * 11 9 7 26 26 H 1.09000 * 110.42004 * 204.29430 * 12 11 9 27 27 H 1.08999 * 110.30007 * 82.08599 * 12 11 9 28 28 H 0.96996 * 120.00146 * 359.97438 * 16 14 13 29 29 H 1.09002 * 109.47655 * 300.00095 * 17 16 14 30 30 H 1.09006 * 109.47611 * 59.99693 * 17 16 14 31 31 H 1.08997 * 109.88565 * 239.52352 * 22 13 12 32 32 H 1.09002 * 110.01205 * 118.43054 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6077 -2.5714 -0.8774 11 6 2.2324 -3.6995 0.0607 12 6 1.3483 -4.7876 0.7246 13 7 0.5274 -4.0610 1.7104 14 6 -0.0385 -4.5978 2.8095 15 8 -0.6986 -3.9006 3.5556 16 7 0.1276 -5.9073 3.0819 17 6 -0.4871 -6.4906 4.2768 18 6 -0.1459 -7.9802 4.3505 19 9 1.2427 -8.1379 4.4160 20 9 -0.7333 -8.5375 5.4914 21 9 -0.6354 -8.6276 3.2110 22 6 0.4275 -2.6541 1.2954 23 1 -0.4849 -0.8401 0.0004 24 1 2.5432 -4.0014 -0.9395 25 1 3.0963 -3.4665 0.6830 26 1 1.9704 -5.5309 1.2233 27 1 0.7122 -5.2647 -0.0208 28 1 0.6541 -6.4635 2.4866 29 1 -0.1054 -5.9866 5.1647 30 1 -1.5690 -6.3674 4.2260 31 1 0.8351 -2.0083 2.0731 32 1 -0.6140 -2.3941 1.1060 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397669388.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:04 Heat of formation + Delta-G solvation = -188.424995 kcal Electronic energy + Delta-G solvation = -20518.811745 eV Core-core repulsion = 16678.133077 eV Total energy + Delta-G solvation = -3840.678668 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.098 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.45128 -47.96709 -47.92241 -39.91724 -37.28183 -34.92848 -33.33402 -30.84105 -29.14434 -27.86093 -24.85586 -23.49727 -22.52087 -20.35873 -19.87615 -18.91408 -18.63872 -18.45349 -17.22652 -16.65991 -15.91341 -15.67684 -14.95155 -14.80450 -14.46170 -14.35684 -14.17777 -14.07132 -14.03216 -13.78916 -13.31893 -13.21502 -12.56369 -12.41268 -12.09323 -11.84424 -11.40261 -10.88325 -10.78515 -10.17314 -10.12003 -9.96143 -9.70587 -9.35835 -8.68400 -8.48380 -8.04108 -6.43819 -4.19110 2.21051 2.65403 3.37996 3.39200 3.41723 3.43790 3.59498 3.72596 3.82969 4.18124 4.47738 4.94560 5.06607 5.21860 5.25829 5.52028 5.64257 5.83606 6.14320 6.20852 6.49001 6.54881 6.67543 6.76547 6.94850 7.26594 7.40497 8.06320 8.18574 8.33611 8.73928 8.78931 9.53024 10.93777 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.043782 B = 0.004098 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.385794 B = 6830.744279 C = 7069.002147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.022 3.978 3 Si 1.072 2.928 4 H -0.287 1.287 5 H -0.284 1.284 6 H -0.288 1.288 7 C -0.597 4.597 8 H 0.055 0.945 9 C 0.027 3.973 10 H 0.033 0.967 11 C -0.118 4.118 12 C 0.096 3.904 13 N -0.626 5.626 14 C 0.722 3.278 15 O -0.588 6.588 16 N -0.751 5.751 17 C 0.101 3.899 18 C 0.448 3.552 19 F -0.179 7.179 20 F -0.175 7.175 21 F -0.179 7.179 22 C 0.130 3.870 23 H 0.272 0.728 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.400 0.600 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.260 -16.173 5.610 17.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.184 4.184 3 Si 0.900 3.100 4 H -0.214 1.214 5 H -0.209 1.209 6 H -0.214 1.214 7 C -0.635 4.635 8 H 0.073 0.927 9 C 0.008 3.992 10 H 0.051 0.949 11 C -0.156 4.156 12 C -0.027 4.027 13 N -0.362 5.362 14 C 0.424 3.576 15 O -0.466 6.466 16 N -0.411 5.411 17 C -0.026 4.026 18 C 0.394 3.606 19 F -0.160 7.160 20 F -0.156 7.156 21 F -0.160 7.160 22 C 0.008 3.992 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.236 0.764 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.084 0.916 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.528 -14.037 6.217 15.361 hybrid contribution 0.469 -2.361 -0.186 2.414 sum 0.996 -16.398 6.031 17.500 Atomic orbital electron populations 1.70800 1.06876 1.31029 1.45320 1.25891 0.96491 1.02848 0.93170 0.83490 0.74640 0.74989 0.76880 1.21356 1.20925 1.21417 1.21893 0.94222 0.90621 1.56764 0.92654 1.19927 0.93104 0.94246 0.91897 0.94857 1.22763 0.98234 0.95110 0.99483 1.22372 0.93403 0.95628 0.91287 1.47974 1.52657 1.12722 1.22844 1.15310 0.80323 0.80603 0.81406 1.90930 1.45376 1.60205 1.50087 1.44768 1.58940 1.09929 1.27510 1.22196 1.02396 0.85886 0.92156 1.20628 0.74746 0.91333 0.73932 1.93227 1.30235 1.96580 1.95975 1.93218 1.84025 1.87225 1.51135 1.93225 1.87639 1.84070 1.51110 1.22672 1.00345 0.77071 0.99106 0.91665 0.91234 0.91262 0.92308 0.92134 0.76435 0.87043 0.87037 0.91618 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.40 13.45 55.43 0.75 -25.66 16 2 C 0.02 0.59 5.34 -17.82 -0.10 0.49 16 3 Si 1.07 24.40 29.90 -169.99 -5.08 19.32 16 4 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.60 -15.78 8.38 -34.44 -0.29 -16.07 16 8 H 0.06 1.45 7.77 -52.48 -0.41 1.04 16 9 C 0.03 0.64 2.47 -89.93 -0.22 0.42 16 10 H 0.03 0.82 8.00 -51.93 -0.42 0.40 16 11 C -0.12 -2.16 6.52 -24.46 -0.16 -2.32 16 12 C 0.10 1.51 6.58 -2.41 -0.02 1.50 16 13 N -0.63 -12.11 3.33 -176.10 -0.59 -12.69 16 14 C 0.72 13.50 8.49 -86.91 -0.74 12.77 16 15 O -0.59 -13.21 16.67 5.29 0.09 -13.12 16 16 N -0.75 -10.15 5.38 -65.23 -0.35 -10.50 16 17 C 0.10 1.09 5.64 -4.05 -0.02 1.06 16 18 C 0.45 4.31 3.11 37.15 0.12 4.42 16 19 F -0.18 -1.84 17.18 2.25 0.04 -1.80 16 20 F -0.17 -1.67 17.32 2.25 0.04 -1.63 16 21 F -0.18 -1.83 17.18 2.25 0.04 -1.79 16 22 C 0.13 3.04 5.47 -3.06 -0.02 3.02 16 23 H 0.27 7.85 5.62 -40.82 -0.23 7.62 16 24 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.07 1.30 8.03 -51.93 -0.42 0.88 16 26 H 0.06 0.75 7.30 -51.93 -0.38 0.37 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.40 4.62 6.84 -40.82 -0.28 4.34 16 29 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.72 7.81 -51.93 -0.41 1.32 16 32 H 0.05 1.31 7.01 -51.93 -0.36 0.94 16 LS Contribution 284.67 15.07 4.29 4.29 Total: -1.00 -31.00 284.67 -5.61 -36.60 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -3.38 Total: 1.69 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -1.44 Total: 5.29 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -0.19 Total: -48.85 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.09 Total: -13.12 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.12 Total: -5.22 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -5.08 Total: 19.32 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.00 -5.61 -36.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397669388.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.822 kcal (2) G-P(sol) polarization free energy of solvation -30.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds