Wall clock time and date at job start Mon Mar 30 2020 05:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.63989 * 59.30207 * 9 7 2 11 11 C 1.55160 * 110.71841 * 182.44384 * 9 7 2 12 12 C 1.55123 * 101.48463 * 153.73555 * 11 9 7 13 13 N 1.47429 * 104.94030 * 323.21969 * 12 11 9 14 14 C 1.34776 * 125.64942 * 203.96554 * 13 12 11 15 15 O 1.21584 * 120.00252 * 180.02562 * 14 13 12 16 16 N 1.34784 * 119.99690 * 0.04536 * 14 13 12 17 17 C 1.46493 * 119.99877 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.47322 * 180.02562 * 17 16 14 19 19 F 1.39904 * 109.47447 * 59.99773 * 18 17 16 20 20 F 1.39907 * 109.47654 * 180.02562 * 18 17 16 21 21 F 1.39903 * 109.47067 * 299.99975 * 18 17 16 22 22 C 1.47023 * 108.70481 * 24.00475 * 13 12 11 23 23 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 24 24 H 1.09000 * 111.00253 * 271.93589 * 11 9 7 25 25 H 1.08994 * 111.00381 * 35.79218 * 11 9 7 26 26 H 1.09000 * 110.42004 * 204.29430 * 12 11 9 27 27 H 1.08999 * 110.30007 * 82.08599 * 12 11 9 28 28 H 0.96996 * 120.00146 * 359.97438 * 16 14 13 29 29 H 1.09002 * 109.47655 * 300.00095 * 17 16 14 30 30 H 1.09006 * 109.47611 * 59.99693 * 17 16 14 31 31 H 1.08997 * 109.88565 * 239.52352 * 22 13 12 32 32 H 1.09002 * 110.01205 * 118.43054 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6077 -2.5714 -0.8774 11 6 2.2324 -3.6995 0.0607 12 6 1.3483 -4.7876 0.7246 13 7 0.5274 -4.0610 1.7104 14 6 -0.0385 -4.5978 2.8095 15 8 -0.6986 -3.9006 3.5556 16 7 0.1276 -5.9073 3.0819 17 6 -0.4871 -6.4906 4.2768 18 6 -0.1459 -7.9802 4.3505 19 9 1.2427 -8.1379 4.4160 20 9 -0.7333 -8.5375 5.4914 21 9 -0.6354 -8.6276 3.2110 22 6 0.4275 -2.6541 1.2954 23 1 -0.4849 -0.8401 0.0004 24 1 2.5432 -4.0014 -0.9395 25 1 3.0963 -3.4665 0.6830 26 1 1.9704 -5.5309 1.2233 27 1 0.7122 -5.2647 -0.0208 28 1 0.6541 -6.4635 2.4866 29 1 -0.1054 -5.9866 5.1647 30 1 -1.5690 -6.3674 4.2260 31 1 0.8351 -2.0083 2.0731 32 1 -0.6140 -2.3941 1.1060 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397669388.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:03 Heat of formation + Delta-G solvation = -209.194648 kcal Electronic energy + Delta-G solvation = -20519.712385 eV Core-core repulsion = 16678.133077 eV Total energy + Delta-G solvation = -3841.579308 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.098 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -51.24539 -48.75172 -48.71960 -41.40459 -38.87201 -36.22512 -35.24108 -32.45449 -30.35159 -29.46746 -26.71906 -24.66854 -23.87563 -21.93434 -21.36261 -19.80811 -19.70959 -19.49746 -18.88045 -18.06792 -17.32954 -17.04916 -16.12257 -15.73865 -15.63047 -15.58278 -15.28011 -15.14522 -15.00402 -14.86674 -14.85560 -14.53335 -14.13704 -13.87330 -13.69840 -13.14574 -12.99996 -12.63675 -12.48405 -11.92462 -11.86175 -11.55514 -11.43587 -10.65296 -10.61756 -10.56475 -9.61796 -8.60388 -6.35979 1.13224 1.56316 1.61688 1.64986 1.80887 1.91573 2.56262 2.58434 2.69671 2.91477 3.18465 3.19816 3.81632 4.01173 4.08571 4.23318 4.27124 4.38356 4.52251 4.72293 4.94620 4.96358 5.04783 5.11807 5.29028 5.54154 5.82489 6.04941 6.19872 6.61364 6.80046 7.29831 7.44760 8.77737 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.043782 B = 0.004098 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.385794 B = 6830.744279 C = 7069.002147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.030 4.030 3 Si 1.115 2.885 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.604 4.604 8 H 0.057 0.943 9 C 0.017 3.983 10 H 0.017 0.983 11 C -0.109 4.109 12 C 0.100 3.900 13 N -0.632 5.632 14 C 0.720 3.280 15 O -0.632 6.632 16 N -0.731 5.731 17 C 0.096 3.904 18 C 0.464 3.536 19 F -0.179 7.179 20 F -0.171 7.171 21 F -0.179 7.179 22 C 0.150 3.850 23 H 0.260 0.740 24 H 0.094 0.906 25 H 0.065 0.935 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.414 0.586 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.026 0.974 32 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.649 -18.048 5.598 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.229 4.229 3 Si 0.937 3.063 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.642 4.642 8 H 0.075 0.925 9 C -0.003 4.003 10 H 0.035 0.965 11 C -0.147 4.147 12 C -0.022 4.022 13 N -0.368 5.368 14 C 0.422 3.578 15 O -0.513 6.513 16 N -0.391 5.391 17 C -0.030 4.030 18 C 0.409 3.591 19 F -0.161 7.161 20 F -0.153 7.153 21 F -0.161 7.161 22 C 0.026 3.974 23 H 0.071 0.929 24 H 0.112 0.888 25 H 0.084 0.916 26 H 0.119 0.881 27 H 0.101 0.899 28 H 0.251 0.749 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.045 0.955 32 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.953 -16.003 6.196 17.271 hybrid contribution 0.031 -1.854 -0.157 1.861 sum 1.984 -17.857 6.039 18.954 Atomic orbital electron populations 1.70908 1.08001 1.30451 1.48012 1.27243 0.96524 1.06590 0.92572 0.82949 0.74465 0.71491 0.77370 1.20661 1.21154 1.18935 1.22302 0.94555 0.92072 1.55286 0.92502 1.19890 0.94018 0.95495 0.90869 0.96524 1.22706 0.97205 0.93517 1.01272 1.22583 0.93307 0.95132 0.91148 1.47872 1.53561 1.11436 1.23942 1.15420 0.79803 0.81861 0.80696 1.90900 1.47209 1.61781 1.51454 1.44482 1.58303 1.08010 1.28282 1.22369 1.02770 0.86694 0.91153 1.20247 0.74584 0.90348 0.73924 1.93233 1.30333 1.96531 1.95980 1.93232 1.84000 1.87031 1.51013 1.93232 1.87654 1.84010 1.51184 1.22040 0.98150 0.79210 0.97975 0.92906 0.88757 0.91639 0.88136 0.89904 0.74851 0.86406 0.86352 0.95501 0.95929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.53 13.45 21.45 0.29 -56.24 16 2 C -0.03 -1.69 5.34 84.65 0.45 -1.23 16 3 Si 1.11 49.28 29.90 68.60 2.05 51.33 16 4 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.60 -32.23 8.38 25.60 0.21 -32.02 16 8 H 0.06 2.95 7.77 -2.91 -0.02 2.93 16 9 C 0.02 0.78 2.47 -10.35 -0.03 0.75 16 10 H 0.02 0.84 8.00 -2.39 -0.02 0.82 16 11 C -0.11 -3.76 6.52 32.06 0.21 -3.55 16 12 C 0.10 2.82 6.58 86.93 0.57 3.39 16 13 N -0.63 -23.95 3.33 -829.31 -2.76 -26.71 16 14 C 0.72 26.30 8.49 179.05 1.52 27.82 16 15 O -0.63 -28.71 16.67 -3.98 -0.07 -28.78 16 16 N -0.73 -17.97 5.38 -478.54 -2.57 -20.55 16 17 C 0.10 1.87 5.64 86.38 0.49 2.35 16 18 C 0.46 7.66 3.11 71.98 0.22 7.88 16 19 F -0.18 -3.15 17.18 44.97 0.77 -2.38 16 20 F -0.17 -2.87 17.32 44.97 0.78 -2.09 16 21 F -0.18 -3.14 17.18 44.97 0.77 -2.37 16 22 C 0.15 7.25 5.47 86.73 0.47 7.73 16 23 H 0.26 15.81 5.62 -92.71 -0.52 15.29 16 24 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 25 H 0.06 2.31 8.03 -2.39 -0.02 2.29 16 26 H 0.10 2.06 7.30 -2.39 -0.02 2.05 16 27 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.41 8.02 6.84 -92.71 -0.63 7.39 16 29 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.12 2.23 8.14 -2.38 -0.02 2.21 16 31 H 0.03 1.47 7.81 -2.39 -0.02 1.45 16 32 H 0.02 1.19 7.01 -2.39 -0.02 1.18 16 Total: -1.00 -69.36 284.67 4.17 -65.20 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.77 Total: 9.45 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 4.13 Total: 13.13 kcal Atomic # 7 Polarization: -98.46 SS G_CDS: -5.04 Total: -103.50 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.07 Total: -28.78 kcal Atomic # 9 Polarization: -9.15 SS G_CDS: 2.32 Total: -6.83 kcal Atomic # 14 Polarization: 49.28 SS G_CDS: 2.05 Total: 51.33 kcal Total: -69.36 4.17 -65.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397669388.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.998 kcal (2) G-P(sol) polarization free energy of solvation -69.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds