Wall clock time and date at job start Mon Mar 30 2020 05:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81006 * 1 3 3 C 1.76205 * 100.00005 * 2 1 4 4 N 1.32513 * 119.83030 * 359.97438 * 3 2 1 5 5 C 1.31823 * 121.75982 * 180.02562 * 4 3 2 6 6 C 1.38403 * 121.23303 * 0.02562 * 5 4 3 7 7 C 1.38328 * 119.52302 * 0.25184 * 6 5 4 8 8 C 1.39980 * 118.37279 * 359.50648 * 7 6 5 9 9 C 1.47384 * 120.61324 * 180.24131 * 8 7 6 10 10 O 1.21615 * 120.00394 * 180.25674 * 9 8 7 11 11 N 1.34783 * 120.00141 * 0.24937 * 9 8 7 12 12 C 1.46490 * 120.00162 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47353 * 180.02562 * 12 11 9 14 14 C 1.50698 * 109.47384 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00181 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99997 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99960 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00051 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47170 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.46994 * 120.00279 * 18 16 14 21 21 H 1.48510 * 109.47059 * 240.00298 * 18 16 14 22 22 H 1.08994 * 109.47204 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47206 * 300.00748 * 1 2 3 24 24 H 1.09001 * 109.46814 * 60.00042 * 1 2 3 25 25 H 1.08007 * 119.38008 * 180.02562 * 5 4 3 26 26 H 1.08002 * 120.23554 * 179.97438 * 6 5 4 27 27 H 1.08001 * 120.81574 * 179.74892 * 7 6 5 28 28 H 0.97003 * 119.99381 * 0.02562 * 11 9 8 29 29 H 1.09001 * 109.47760 * 300.00612 * 12 11 9 30 30 H 1.09010 * 109.47400 * 60.00578 * 12 11 9 31 31 H 1.09001 * 109.47379 * 300.00505 * 13 12 11 32 32 H 1.08996 * 109.46992 * 60.00203 * 13 12 11 33 33 H 0.97006 * 119.99736 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 1.0984 2.5840 -0.0005 5 6 1.2835 3.8892 -0.0010 6 6 2.5560 4.4336 -0.0016 7 6 3.6561 3.5951 -0.0069 8 6 3.4386 2.2123 -0.0010 9 6 4.5749 1.2738 -0.0009 10 8 4.3732 0.0745 -0.0004 11 7 5.8379 1.7446 -0.0015 12 6 6.9674 0.8117 -0.0019 13 6 8.2792 1.5991 -0.0019 14 6 9.4411 0.6395 -0.0031 15 1 9.2619 -0.4255 -0.0041 16 6 10.7330 1.1211 -0.0038 17 7 10.9513 2.4181 -0.0030 18 14 12.1734 -0.0684 -0.0059 19 1 11.6635 -1.4631 -0.0072 20 1 12.9997 0.1571 -1.2189 21 1 13.0018 0.1552 1.2062 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.4260 4.5460 -0.0010 26 1 2.6889 5.5054 -0.0024 27 1 4.6584 3.9974 -0.0115 28 1 5.9988 2.7012 -0.0016 29 1 6.9207 0.1841 0.8880 30 1 6.9200 0.1841 -0.8920 31 1 8.3261 2.2270 -0.8917 32 1 8.3264 2.2263 0.8882 33 1 11.8602 2.7570 -0.0039 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701172224.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:19 Heat of formation + Delta-G solvation = -9.512294 kcal Electronic energy + Delta-G solvation = -17026.948879 eV Core-core repulsion = 14178.638060 eV Total energy + Delta-G solvation = -2848.310820 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.47750 -38.74230 -35.00866 -33.26831 -32.56580 -31.58201 -29.53482 -28.81605 -25.43863 -24.12508 -23.69056 -21.15295 -20.45854 -18.40293 -17.32277 -16.72399 -16.32854 -15.38207 -15.22533 -15.02490 -14.52783 -14.25317 -14.22852 -13.94539 -13.31920 -13.22159 -12.96962 -12.82101 -12.32947 -11.99359 -11.23903 -11.07761 -10.85565 -10.62847 -10.40016 -10.28685 -9.89621 -9.77558 -9.69133 -9.40177 -9.12161 -8.63222 -8.41489 -7.52304 -6.12045 -4.14785 0.50149 0.92875 1.55671 2.34294 2.96536 3.27293 3.34782 3.39227 3.50838 3.71400 4.35174 4.41262 4.53943 4.71160 4.88038 5.01875 5.19710 5.21473 5.25430 5.31085 5.67571 5.80613 5.84980 6.22652 6.30857 6.32397 6.68966 6.80806 7.46119 7.49083 7.57174 7.85502 7.88975 8.23684 8.49512 8.91304 9.50405 10.99617 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.033340 B = 0.003868 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.637805 B = 7237.143723 C = 8051.031886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 S 0.048 5.952 3 C 0.149 3.851 4 N -0.497 5.497 5 C 0.135 3.865 6 C -0.192 4.192 7 C -0.024 4.024 8 C -0.172 4.172 9 C 0.547 3.453 10 O -0.518 6.518 11 N -0.713 5.713 12 C 0.122 3.878 13 C 0.012 3.988 14 C -0.521 4.521 15 H 0.061 0.939 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.095 0.905 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.161 0.839 26 H 0.142 0.858 27 H 0.145 0.855 28 H 0.396 0.604 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.470 4.322 -0.004 19.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.357 4.357 2 S 0.290 5.710 3 C -0.100 4.100 4 N -0.210 5.210 5 C -0.026 4.026 6 C -0.216 4.216 7 C -0.052 4.052 8 C -0.185 4.185 9 C 0.332 3.668 10 O -0.397 6.397 11 N -0.363 5.363 12 C 0.000 4.000 13 C -0.026 4.026 14 C -0.560 4.560 15 H 0.079 0.921 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.209 1.209 22 H 0.114 0.886 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.178 0.822 26 H 0.160 0.840 27 H 0.162 0.838 28 H 0.230 0.770 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.615 2.102 -0.004 19.727 hybrid contribution 0.931 1.646 -0.003 1.891 sum -18.684 3.748 -0.006 19.056 Atomic orbital electron populations 1.23816 1.00377 1.05447 1.06087 1.87332 1.01067 0.94780 1.87800 1.23559 0.90398 1.00433 0.95580 1.68150 1.32530 1.04168 1.16134 1.22915 0.97004 0.90991 0.91722 1.22002 0.93189 1.01478 1.04915 1.21790 1.00309 0.91667 0.91405 1.20676 0.93827 0.94750 1.09264 1.17900 0.83022 0.87872 0.77957 1.90696 1.83665 1.15134 1.50250 1.46207 1.05658 1.11125 1.73274 1.21796 0.84931 0.92136 1.01152 1.19340 0.89442 0.95931 0.97871 1.21079 0.90455 0.93165 1.51253 0.92111 1.24997 0.99118 0.95226 0.94944 1.69966 1.20952 1.11946 1.50464 0.86453 0.82182 0.81302 0.77622 1.19536 1.20931 1.20923 0.88613 0.89961 0.89967 0.82156 0.83981 0.83752 0.76953 0.92188 0.92186 0.95908 0.95903 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.01 9.65 101.05 0.97 -1.04 16 2 S 0.05 0.70 19.63 -107.50 -2.11 -1.41 16 3 C 0.15 2.18 7.02 -16.37 -0.11 2.07 16 4 N -0.50 -6.32 9.13 -11.68 -0.11 -6.42 16 5 C 0.14 1.32 11.16 -17.49 -0.20 1.12 16 6 C -0.19 -1.74 10.09 -39.49 -0.40 -2.14 16 7 C -0.02 -0.27 9.64 -38.90 -0.37 -0.65 16 8 C -0.17 -2.53 5.91 -104.63 -0.62 -3.15 16 9 C 0.55 9.63 7.75 -12.54 -0.10 9.53 16 10 O -0.52 -10.52 13.80 5.26 0.07 -10.45 16 11 N -0.71 -12.38 5.51 -61.40 -0.34 -12.72 16 12 C 0.12 2.54 5.61 -4.05 -0.02 2.52 16 13 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 14 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 15 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 18 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 23 H 0.08 0.86 8.12 -51.92 -0.42 0.44 16 24 H 0.08 0.86 8.12 -51.92 -0.42 0.44 16 25 H 0.16 0.98 8.06 -52.48 -0.42 0.56 16 26 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 27 H 0.14 1.33 6.51 -52.49 -0.34 0.99 16 28 H 0.40 5.84 6.57 -40.82 -0.27 5.57 16 29 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 300.90 15.07 4.53 4.53 Total: -1.00 -31.90 300.90 -7.59 -39.48 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -3.95 Total: 0.53 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -1.40 Total: -4.64 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.29 Total: -44.22 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.11 Total: -1.41 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.90 -7.59 -39.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701172224.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.969 kcal (2) G-P(sol) polarization free energy of solvation -31.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds