Wall clock time and date at job start Mon Mar 30 2020 05:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81006 * 1 3 3 C 1.76205 * 100.00005 * 2 1 4 4 N 1.32513 * 119.83030 * 359.97438 * 3 2 1 5 5 C 1.31823 * 121.75982 * 180.02562 * 4 3 2 6 6 C 1.38403 * 121.23303 * 0.02562 * 5 4 3 7 7 C 1.38328 * 119.52302 * 0.25184 * 6 5 4 8 8 C 1.39980 * 118.37279 * 359.50648 * 7 6 5 9 9 C 1.47384 * 120.61324 * 180.24131 * 8 7 6 10 10 O 1.21615 * 120.00394 * 180.25674 * 9 8 7 11 11 N 1.34783 * 120.00141 * 0.24937 * 9 8 7 12 12 C 1.46490 * 120.00162 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47353 * 180.02562 * 12 11 9 14 14 C 1.50698 * 109.47384 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00181 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99997 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99960 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00051 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47170 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.46994 * 120.00279 * 18 16 14 21 21 H 1.48510 * 109.47059 * 240.00298 * 18 16 14 22 22 H 1.08994 * 109.47204 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47206 * 300.00748 * 1 2 3 24 24 H 1.09001 * 109.46814 * 60.00042 * 1 2 3 25 25 H 1.08007 * 119.38008 * 180.02562 * 5 4 3 26 26 H 1.08002 * 120.23554 * 179.97438 * 6 5 4 27 27 H 1.08001 * 120.81574 * 179.74892 * 7 6 5 28 28 H 0.97003 * 119.99381 * 0.02562 * 11 9 8 29 29 H 1.09001 * 109.47760 * 300.00612 * 12 11 9 30 30 H 1.09010 * 109.47400 * 60.00578 * 12 11 9 31 31 H 1.09001 * 109.47379 * 300.00505 * 13 12 11 32 32 H 1.08996 * 109.46992 * 60.00203 * 13 12 11 33 33 H 0.97006 * 119.99736 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 1.0984 2.5840 -0.0005 5 6 1.2835 3.8892 -0.0010 6 6 2.5560 4.4336 -0.0016 7 6 3.6561 3.5951 -0.0069 8 6 3.4386 2.2123 -0.0010 9 6 4.5749 1.2738 -0.0009 10 8 4.3732 0.0745 -0.0004 11 7 5.8379 1.7446 -0.0015 12 6 6.9674 0.8117 -0.0019 13 6 8.2792 1.5991 -0.0019 14 6 9.4411 0.6395 -0.0031 15 1 9.2619 -0.4255 -0.0041 16 6 10.7330 1.1211 -0.0038 17 7 10.9513 2.4181 -0.0030 18 14 12.1734 -0.0684 -0.0059 19 1 11.6635 -1.4631 -0.0072 20 1 12.9997 0.1571 -1.2189 21 1 13.0018 0.1552 1.2062 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.4260 4.5460 -0.0010 26 1 2.6889 5.5054 -0.0024 27 1 4.6584 3.9974 -0.0115 28 1 5.9988 2.7012 -0.0016 29 1 6.9207 0.1841 0.8880 30 1 6.9200 0.1841 -0.8920 31 1 8.3261 2.2270 -0.8917 32 1 8.3264 2.2263 0.8882 33 1 11.8602 2.7570 -0.0039 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701172224.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:19 Heat of formation + Delta-G solvation = -30.901623 kcal Electronic energy + Delta-G solvation = -17027.876390 eV Core-core repulsion = 14178.638060 eV Total energy + Delta-G solvation = -2849.238331 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.54189 -39.98486 -36.67307 -34.95394 -33.83787 -32.55642 -31.30084 -29.68912 -27.11952 -25.32926 -24.73339 -22.93677 -21.80273 -19.44927 -18.66730 -18.26530 -17.68462 -16.61498 -16.51849 -16.38077 -16.24855 -15.47307 -15.40682 -14.97336 -14.61640 -14.31627 -14.28520 -14.12476 -13.62614 -13.21255 -12.95913 -12.90254 -12.53264 -12.26697 -11.99890 -11.62026 -11.38286 -11.15395 -10.79262 -10.76950 -10.60828 -10.44504 -10.08900 -8.60201 -8.24232 -6.34143 -0.46846 0.05841 0.55240 1.41352 1.41826 1.42865 1.55586 1.79964 2.12859 2.43701 2.70090 3.10922 3.48595 3.66925 3.75202 3.97081 4.20580 4.37428 4.38475 4.43569 4.48871 4.55748 4.84677 4.85245 4.95709 5.04945 5.23204 5.46083 5.51820 5.57821 5.78255 6.15909 6.49714 6.62094 6.78830 7.14000 7.35210 8.87785 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.033340 B = 0.003868 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.637805 B = 7237.143723 C = 8051.031886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 S -0.024 6.024 3 C 0.139 3.861 4 N -0.508 5.508 5 C 0.139 3.861 6 C -0.174 4.174 7 C -0.026 4.026 8 C -0.198 4.198 9 C 0.545 3.455 10 O -0.552 6.552 11 N -0.708 5.708 12 C 0.142 3.858 13 C 0.023 3.977 14 C -0.546 4.546 15 H 0.058 0.942 16 C 0.009 3.991 17 N -0.925 5.925 18 Si 0.964 3.036 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.277 1.277 22 H 0.114 0.886 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.204 0.796 26 H 0.186 0.814 27 H 0.162 0.838 28 H 0.409 0.591 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.011 0.989 32 H 0.011 0.989 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.558 5.947 -0.006 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.333 4.333 2 S 0.219 5.781 3 C -0.109 4.109 4 N -0.221 5.221 5 C -0.023 4.023 6 C -0.197 4.197 7 C -0.054 4.054 8 C -0.211 4.211 9 C 0.333 3.667 10 O -0.433 6.433 11 N -0.360 5.360 12 C 0.019 3.981 13 C -0.015 4.015 14 C -0.584 4.584 15 H 0.076 0.924 16 C -0.190 4.190 17 N -0.565 5.565 18 Si 0.788 3.212 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 H 0.132 0.868 23 H 0.104 0.896 24 H 0.104 0.896 25 H 0.220 0.780 26 H 0.203 0.797 27 H 0.180 0.820 28 H 0.246 0.754 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.719 3.751 -0.006 21.056 hybrid contribution 1.134 1.281 -0.002 1.710 sum -19.585 5.032 -0.008 20.221 Atomic orbital electron populations 1.23727 0.96525 1.06741 1.06296 1.87448 1.05252 0.96992 1.88437 1.23412 0.90791 1.00076 0.96642 1.68185 1.31863 1.05444 1.16617 1.23733 0.98967 0.90260 0.89308 1.22484 0.91920 1.03273 1.01998 1.22101 1.02228 0.90347 0.90682 1.20472 0.92597 0.95655 1.12391 1.18375 0.83461 0.88073 0.76807 1.90689 1.84340 1.16827 1.51491 1.45959 1.04974 1.11280 1.73745 1.21276 0.84814 0.91941 1.00096 1.19142 0.90456 0.95363 0.96520 1.21485 0.91865 0.93641 1.51442 0.92354 1.25839 1.01846 0.96933 0.94414 1.70058 1.21821 1.13565 1.51071 0.85415 0.78689 0.79159 0.77897 1.19057 1.20224 1.20213 0.86797 0.89634 0.89640 0.77980 0.79705 0.82025 0.75421 0.93288 0.93281 0.97110 0.97106 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 9.65 113.37 1.09 -2.29 16 2 S -0.02 -0.72 19.63 -56.49 -1.11 -1.83 16 3 C 0.14 4.02 7.02 85.17 0.60 4.62 16 4 N -0.51 -11.87 9.13 -190.86 -1.74 -13.62 16 5 C 0.14 2.15 11.16 84.73 0.95 3.09 16 6 C -0.17 -2.40 10.09 22.33 0.23 -2.18 16 7 C -0.03 -0.53 9.64 22.71 0.22 -0.31 16 8 C -0.20 -5.75 5.91 -19.87 -0.12 -5.87 16 9 C 0.55 19.69 7.75 86.65 0.67 20.36 16 10 O -0.55 -23.49 13.80 -4.08 -0.06 -23.55 16 11 N -0.71 -25.05 5.51 -466.41 -2.57 -27.62 16 12 C 0.14 6.13 5.61 86.38 0.48 6.61 16 13 C 0.02 1.13 5.09 29.85 0.15 1.28 16 14 C -0.55 -30.35 9.11 25.60 0.23 -30.12 16 15 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 16 C 0.01 0.47 5.46 84.65 0.46 0.94 16 17 N -0.93 -53.64 13.29 21.45 0.28 -53.35 16 18 Si 0.96 43.45 29.54 68.60 2.03 45.47 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 22 H 0.11 1.88 8.14 -2.40 -0.02 1.86 16 23 H 0.08 1.69 8.12 -2.40 -0.02 1.67 16 24 H 0.08 1.69 8.12 -2.39 -0.02 1.67 16 25 H 0.20 1.36 8.06 -2.91 -0.02 1.33 16 26 H 0.19 1.02 8.06 -2.91 -0.02 1.00 16 27 H 0.16 2.59 6.51 -2.91 -0.02 2.57 16 28 H 0.41 12.02 6.57 -92.71 -0.61 11.41 16 29 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 31 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.27 14.44 8.31 -92.70 -0.77 13.66 16 Total: -1.00 -70.70 300.90 2.32 -68.39 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.52 Total: 9.97 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 4.97 Total: -3.87 kcal Atomic # 7 Polarization: -90.56 SS G_CDS: -4.03 Total: -94.59 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.06 Total: -23.55 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -0.72 SS G_CDS: -1.11 Total: -1.83 kcal Total: -70.70 2.32 -68.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701172224.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.484 kcal (2) G-P(sol) polarization free energy of solvation -70.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds