Wall clock time and date at job start Mon Mar 30 2020 04:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.28600 * 124.59794 * 2 1 4 4 C 1.33648 * 115.86099 * 180.18411 * 3 2 1 5 5 C 1.46718 * 123.30068 * 179.79886 * 4 3 2 6 6 C 1.35234 * 119.99702 * 359.70378 * 5 4 3 7 7 C 1.41709 * 119.99398 * 180.02562 * 6 5 4 8 8 O 1.21753 * 120.00687 * 0.27046 * 7 6 5 9 9 N 1.34784 * 119.99562 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99971 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.47267 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47257 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00042 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99907 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00039 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47328 * 90.00044 * 16 14 12 18 18 H 1.48506 * 109.46776 * 209.99936 * 16 14 12 19 19 H 1.48498 * 109.46978 * 329.99647 * 16 14 12 20 20 C 1.36514 * 113.39875 * 359.52516 * 4 3 2 21 21 S 1.70733 * 124.59211 * 179.68821 * 2 1 3 22 22 H 1.09001 * 109.47498 * 180.29202 * 1 2 3 23 23 H 1.09006 * 109.47020 * 300.28977 * 1 2 3 24 24 H 1.09005 * 109.47505 * 60.28475 * 1 2 3 25 25 H 1.07999 * 120.00084 * 179.69753 * 5 4 3 26 26 H 1.07999 * 120.00214 * 359.97438 * 6 5 4 27 27 H 0.96999 * 120.00044 * 359.97438 * 9 7 6 28 28 H 1.09004 * 109.47024 * 300.00310 * 10 9 7 29 29 H 1.09005 * 109.47136 * 59.99926 * 10 9 7 30 30 H 1.09004 * 109.47330 * 300.00096 * 11 10 9 31 31 H 1.09005 * 109.47124 * 59.99892 * 11 10 9 32 32 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 33 33 H 1.08006 * 125.64526 * 180.27154 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2372 1.0586 0.0000 4 6 3.5581 0.8556 -0.0039 5 6 4.5406 1.9453 -0.0088 6 6 4.1234 3.2316 -0.0156 7 6 5.0724 4.2841 -0.0209 8 8 6.2631 4.0302 -0.0243 9 7 4.6567 5.5662 -0.0283 10 6 5.6376 6.6543 -0.0332 11 6 4.9078 7.9989 -0.0405 12 6 5.9169 9.1181 -0.0462 13 1 6.9731 8.8929 -0.0451 14 6 5.4917 10.4297 -0.0538 15 7 6.3723 11.4064 -0.0583 16 14 3.6647 10.8192 -0.0564 17 1 3.1803 10.9305 1.3429 18 1 3.4336 12.1043 -0.7639 19 1 2.9279 9.7326 -0.7504 20 6 3.9037 -0.4651 0.0032 21 16 2.4762 -1.4055 0.0076 22 1 -0.3634 -1.0276 0.0052 23 1 -0.3633 0.5184 0.8874 24 1 -0.3634 0.5094 -0.8925 25 1 5.5968 1.7201 -0.0068 26 1 3.0672 3.4568 -0.0179 27 1 3.7080 5.7684 -0.0303 28 1 6.2617 6.5848 0.8578 29 1 6.2635 6.5752 -0.9222 30 1 4.2834 8.0686 -0.9313 31 1 4.2822 8.0776 0.8487 32 1 6.0731 12.3291 -0.0633 33 1 4.9121 -0.8518 0.0059 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701299410.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:03 Heat of formation + Delta-G solvation = 11.025063 kcal Electronic energy + Delta-G solvation = -16353.306462 eV Core-core repulsion = 13505.886209 eV Total energy + Delta-G solvation = -2847.420253 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.20359 -39.32870 -35.07296 -33.94226 -32.77901 -31.69668 -30.08665 -28.70076 -25.97205 -24.19467 -22.22820 -20.75763 -20.22136 -19.70256 -17.61775 -17.23832 -16.76370 -15.45622 -15.37809 -15.15019 -14.91863 -14.36108 -14.12554 -13.65815 -13.41103 -13.31363 -13.06229 -12.67930 -12.58121 -12.09419 -11.93225 -11.46317 -11.20070 -10.43101 -10.30903 -10.25997 -10.08193 -9.94130 -9.92878 -9.56780 -9.28660 -8.65437 -8.58063 -8.32687 -6.08955 -4.08868 0.11695 0.96223 1.13525 1.37830 2.71051 3.27504 3.35045 3.36764 3.64195 3.69427 3.79581 4.40051 4.57520 4.78392 4.87536 4.96631 5.05951 5.17588 5.24099 5.31155 5.46726 5.81325 6.02311 6.19689 6.24432 6.31637 6.59720 6.79641 7.17845 7.26598 7.32416 7.69215 7.95302 8.45901 8.60216 8.95565 9.51341 11.04133 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.036726 B = 0.002967 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.221201 B = 9435.478687 C =10171.949395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.028 3.972 3 N -0.452 5.452 4 C 0.083 3.917 5 C -0.014 4.014 6 C -0.170 4.170 7 C 0.536 3.464 8 O -0.554 6.554 9 N -0.719 5.719 10 C 0.129 3.871 11 C -0.023 4.023 12 C -0.522 4.522 13 H 0.076 0.924 14 C 0.069 3.931 15 N -0.899 5.899 16 Si 0.882 3.118 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.266 1.266 20 C -0.279 4.279 21 S 0.187 5.813 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.147 0.853 26 H 0.134 0.866 27 H 0.398 0.602 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.022 0.978 31 H 0.018 0.982 32 H 0.264 0.736 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.419 -27.707 0.122 30.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.251 4.251 3 N -0.167 5.167 4 C -0.049 4.049 5 C -0.036 4.036 6 C -0.194 4.194 7 C 0.325 3.675 8 O -0.436 6.436 9 N -0.368 5.368 10 C 0.006 3.994 11 C -0.060 4.060 12 C -0.561 4.561 13 H 0.094 0.906 14 C -0.133 4.133 15 N -0.538 5.538 16 Si 0.709 3.291 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.190 1.190 20 C -0.419 4.419 21 S 0.445 5.555 22 H 0.098 0.902 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.165 0.835 26 H 0.152 0.848 27 H 0.231 0.769 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -13.043 -28.205 0.127 31.075 hybrid contribution -0.631 1.282 0.012 1.429 sum -13.674 -26.923 0.139 30.197 Atomic orbital electron populations 1.20443 0.84950 1.03542 1.04745 1.27115 1.02260 0.91487 1.04280 1.66885 1.03638 1.30888 1.15272 1.19588 0.89284 0.92329 1.03680 1.21723 0.97417 0.90089 0.94410 1.22235 1.00814 0.93322 1.02986 1.17125 0.88825 0.83622 0.77880 1.90808 1.17540 1.84441 1.50766 1.46291 1.11052 1.06198 1.73276 1.21517 0.90928 0.85243 1.01669 1.19801 0.97122 0.92263 0.96864 1.20930 0.94326 0.89255 1.51558 0.90609 1.25004 0.97707 0.96226 0.94382 1.69908 1.33829 0.99495 1.50521 0.86746 0.85905 0.77903 0.78506 1.20220 1.21281 1.19042 1.26858 1.05369 0.97031 1.12647 1.82745 0.95427 1.11932 1.65429 0.90213 0.89269 0.89268 0.83544 0.84807 0.76869 0.91874 0.91838 0.95969 0.96402 0.92569 0.79971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.47 36.00 0.38 -0.02 16 2 C 0.03 0.24 7.32 -13.63 -0.10 0.14 16 3 N -0.45 -5.26 9.96 -8.37 -0.08 -5.34 16 4 C 0.08 0.96 6.66 -84.27 -0.56 0.40 16 5 C -0.01 -0.18 9.52 -37.23 -0.35 -0.53 16 6 C -0.17 -2.40 9.38 -39.33 -0.37 -2.77 16 7 C 0.54 9.42 7.56 -14.93 -0.11 9.30 16 8 O -0.55 -11.61 16.11 5.14 0.08 -11.53 16 9 N -0.72 -12.63 5.55 -63.20 -0.35 -12.98 16 10 C 0.13 2.73 5.61 -4.05 -0.02 2.71 16 11 C -0.02 -0.53 4.15 -27.89 -0.12 -0.65 16 12 C -0.52 -14.89 9.66 -34.44 -0.33 -15.22 16 13 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 15 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 16 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 20 C -0.28 -2.46 10.99 30.11 0.33 -2.13 16 21 S 0.19 1.27 22.89 -107.50 -2.46 -1.19 16 22 H 0.08 0.23 8.12 -51.93 -0.42 -0.20 16 23 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.15 1.83 7.45 -52.49 -0.39 1.44 16 26 H 0.13 1.71 7.59 -52.49 -0.40 1.31 16 27 H 0.40 5.90 8.43 -40.82 -0.34 5.55 16 28 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.02 0.51 7.20 -51.93 -0.37 0.14 16 31 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.18 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 306.76 15.07 4.62 4.62 Total: -1.00 -34.27 306.76 -7.46 -41.73 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -4.02 Total: 1.79 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -1.36 Total: -6.89 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.34 Total: -45.24 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.08 Total: -11.53 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.46 Total: -1.19 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.27 -7.46 -41.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701299410.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.757 kcal (2) G-P(sol) polarization free energy of solvation -34.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds