Wall clock time and date at job start Mon Mar 30 2020 04:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.28600 * 124.59794 * 2 1 4 4 C 1.33648 * 115.86099 * 180.18411 * 3 2 1 5 5 C 1.46718 * 123.30068 * 179.79886 * 4 3 2 6 6 C 1.35234 * 119.99702 * 359.70378 * 5 4 3 7 7 C 1.41709 * 119.99398 * 180.02562 * 6 5 4 8 8 O 1.21753 * 120.00687 * 0.27046 * 7 6 5 9 9 N 1.34784 * 119.99562 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99971 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.47267 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47257 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00042 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99907 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00039 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47328 * 90.00044 * 16 14 12 18 18 H 1.48506 * 109.46776 * 209.99936 * 16 14 12 19 19 H 1.48498 * 109.46978 * 329.99647 * 16 14 12 20 20 C 1.36514 * 113.39875 * 359.52516 * 4 3 2 21 21 S 1.70733 * 124.59211 * 179.68821 * 2 1 3 22 22 H 1.09001 * 109.47498 * 180.29202 * 1 2 3 23 23 H 1.09006 * 109.47020 * 300.28977 * 1 2 3 24 24 H 1.09005 * 109.47505 * 60.28475 * 1 2 3 25 25 H 1.07999 * 120.00084 * 179.69753 * 5 4 3 26 26 H 1.07999 * 120.00214 * 359.97438 * 6 5 4 27 27 H 0.96999 * 120.00044 * 359.97438 * 9 7 6 28 28 H 1.09004 * 109.47024 * 300.00310 * 10 9 7 29 29 H 1.09005 * 109.47136 * 59.99926 * 10 9 7 30 30 H 1.09004 * 109.47330 * 300.00096 * 11 10 9 31 31 H 1.09005 * 109.47124 * 59.99892 * 11 10 9 32 32 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 33 33 H 1.08006 * 125.64526 * 180.27154 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2372 1.0586 0.0000 4 6 3.5581 0.8556 -0.0039 5 6 4.5406 1.9453 -0.0088 6 6 4.1234 3.2316 -0.0156 7 6 5.0724 4.2841 -0.0209 8 8 6.2631 4.0302 -0.0243 9 7 4.6567 5.5662 -0.0283 10 6 5.6376 6.6543 -0.0332 11 6 4.9078 7.9989 -0.0405 12 6 5.9169 9.1181 -0.0462 13 1 6.9731 8.8929 -0.0451 14 6 5.4917 10.4297 -0.0538 15 7 6.3723 11.4064 -0.0583 16 14 3.6647 10.8192 -0.0564 17 1 3.1803 10.9305 1.3429 18 1 3.4336 12.1043 -0.7639 19 1 2.9279 9.7326 -0.7504 20 6 3.9037 -0.4651 0.0032 21 16 2.4762 -1.4055 0.0076 22 1 -0.3634 -1.0276 0.0052 23 1 -0.3633 0.5184 0.8874 24 1 -0.3634 0.5094 -0.8925 25 1 5.5968 1.7201 -0.0068 26 1 3.0672 3.4568 -0.0179 27 1 3.7080 5.7684 -0.0303 28 1 6.2617 6.5848 0.8578 29 1 6.2635 6.5752 -0.9222 30 1 4.2834 8.0686 -0.9313 31 1 4.2822 8.0776 0.8487 32 1 6.0731 12.3291 -0.0633 33 1 4.9121 -0.8518 0.0059 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701299410.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:03 Heat of formation + Delta-G solvation = -13.791341 kcal Electronic energy + Delta-G solvation = -16354.382582 eV Core-core repulsion = 13505.886209 eV Total energy + Delta-G solvation = -2848.496373 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.11570 -40.55439 -36.74246 -34.87244 -34.80667 -32.66805 -31.77353 -29.33993 -27.49610 -25.52584 -23.24301 -22.53886 -21.23999 -20.66581 -19.04316 -18.56656 -18.21702 -16.58871 -16.53312 -16.36679 -16.13878 -15.99052 -15.17980 -14.96090 -14.79738 -14.53595 -14.24616 -13.59710 -13.36997 -13.26723 -13.06595 -12.94061 -12.63064 -12.20889 -12.18434 -11.77413 -11.53680 -11.26866 -11.05449 -10.79827 -10.73312 -10.56642 -10.09618 -9.21796 -8.31156 -6.38449 -0.67094 0.24498 0.37699 0.72437 1.38438 1.40962 1.52483 1.79863 2.36051 2.36268 2.47636 3.03748 3.04425 3.80197 4.00981 4.19410 4.24221 4.29383 4.37627 4.41009 4.60885 4.71338 4.73325 4.92963 5.08436 5.15952 5.22605 5.26618 5.38490 5.42526 5.63302 6.21101 6.57860 6.65947 6.69944 7.22915 7.26299 8.85687 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.036726 B = 0.002967 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.221201 B = 9435.478687 C =10171.949395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.010 3.990 3 N -0.486 5.486 4 C 0.044 3.956 5 C 0.014 3.986 6 C -0.195 4.195 7 C 0.541 3.459 8 O -0.597 6.597 9 N -0.712 5.712 10 C 0.144 3.856 11 C -0.013 4.013 12 C -0.540 4.540 13 H 0.029 0.971 14 C 0.004 3.996 15 N -0.950 5.950 16 Si 0.959 3.041 17 H -0.264 1.264 18 H -0.285 1.285 19 H -0.239 1.239 20 C -0.276 4.276 21 S 0.263 5.737 22 H 0.106 0.894 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.145 0.855 26 H 0.147 0.853 27 H 0.414 0.586 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.268 0.732 33 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.729 -30.354 0.132 34.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.269 4.269 3 N -0.201 5.201 4 C -0.087 4.087 5 C -0.009 4.009 6 C -0.218 4.218 7 C 0.332 3.668 8 O -0.482 6.482 9 N -0.362 5.362 10 C 0.020 3.980 11 C -0.051 4.051 12 C -0.578 4.578 13 H 0.048 0.952 14 C -0.193 4.193 15 N -0.590 5.590 16 Si 0.781 3.219 17 H -0.189 1.189 18 H -0.211 1.211 19 H -0.162 1.162 20 C -0.417 4.417 21 S 0.522 5.478 22 H 0.124 0.876 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.163 0.837 26 H 0.165 0.835 27 H 0.250 0.750 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -16.394 -30.889 0.137 34.970 hybrid contribution 0.478 1.854 0.012 1.915 sum -15.916 -29.035 0.149 33.112 Atomic orbital electron populations 1.20606 0.82886 1.05368 1.04920 1.27702 1.03785 0.91945 1.03420 1.66866 1.03797 1.32737 1.16701 1.19504 0.89469 0.92740 1.07005 1.21889 0.97915 0.90355 0.90735 1.21938 1.00420 0.92545 1.06868 1.17591 0.88784 0.83980 0.76421 1.90782 1.19472 1.84934 1.52965 1.46032 1.11209 1.05445 1.73532 1.21054 0.91162 0.85755 1.00063 1.19655 0.96129 0.91245 0.98044 1.21254 0.93531 0.91433 1.51622 0.95223 1.26080 1.03808 0.95761 0.93631 1.70075 1.36828 1.00173 1.51939 0.85533 0.78623 0.78349 0.79351 1.18938 1.21066 1.16170 1.27297 1.07706 0.96810 1.09925 1.82512 0.92844 1.09460 1.63007 0.87569 0.89072 0.89061 0.83730 0.83489 0.74962 0.93637 0.93644 0.94536 0.94655 0.92274 0.78048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.47 71.23 0.75 0.15 16 2 C 0.01 0.15 7.32 88.58 0.65 0.79 16 3 N -0.49 -10.50 9.96 -180.40 -1.80 -12.30 16 4 C 0.04 0.96 6.66 40.68 0.27 1.23 16 5 C 0.01 0.34 9.52 23.79 0.23 0.57 16 6 C -0.19 -5.43 9.38 22.43 0.21 -5.22 16 7 C 0.54 19.15 7.56 85.10 0.64 19.80 16 8 O -0.60 -25.75 16.11 -4.52 -0.07 -25.83 16 9 N -0.71 -24.80 5.55 -472.05 -2.62 -27.42 16 10 C 0.14 6.21 5.61 86.38 0.48 6.70 16 11 C -0.01 -0.60 4.15 29.85 0.12 -0.48 16 12 C -0.54 -31.65 9.66 25.60 0.25 -31.40 16 13 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 14 C 0.00 0.25 5.47 84.65 0.46 0.72 16 15 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 16 Si 0.96 43.30 27.47 68.60 1.88 45.18 16 17 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 18 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 19 H -0.24 -9.67 6.54 99.48 0.65 -9.02 16 20 C -0.28 -4.17 10.99 67.42 0.74 -3.43 16 21 S 0.26 2.66 22.89 -56.49 -1.29 1.36 16 22 H 0.11 0.20 8.12 -2.39 -0.02 0.18 16 23 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 24 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 25 H 0.15 3.59 7.45 -2.91 -0.02 3.57 16 26 H 0.15 3.65 7.59 -2.91 -0.02 3.63 16 27 H 0.41 11.66 8.43 -92.71 -0.78 10.87 16 28 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 30 H 0.04 1.60 7.20 -2.38 -0.02 1.58 16 31 H 0.04 1.53 7.57 -2.38 -0.02 1.51 16 32 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 33 H 0.20 2.07 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -76.86 306.76 1.50 -75.37 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.29 Total: 14.05 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 4.81 Total: -10.57 kcal Atomic # 7 Polarization: -95.45 SS G_CDS: -4.11 Total: -99.57 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.07 Total: -25.83 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.88 Total: 45.18 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -1.29 Total: 1.36 kcal Total: -76.86 1.50 -75.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701299410.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.574 kcal (2) G-P(sol) polarization free energy of solvation -76.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds