Wall clock time and date at job start Mon Mar 30 2020 04:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.28608 * 124.59879 * 2 1 4 4 C 1.33640 * 115.86072 * 180.22175 * 3 2 1 5 5 C 1.46721 * 123.29734 * 179.75815 * 4 3 2 6 6 C 1.35227 * 120.00262 * 124.58789 * 5 4 3 7 7 C 1.41716 * 119.99711 * 358.06728 * 6 5 4 8 8 O 1.21752 * 120.00045 * 87.92412 * 7 6 5 9 9 N 1.34782 * 119.99655 * 267.92610 * 7 6 5 10 10 C 1.46497 * 119.99669 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47336 * 324.99725 * 10 9 7 12 12 C 1.53000 * 109.47228 * 85.00225 * 10 9 7 13 13 C 1.50701 * 109.46833 * 204.99782 * 10 9 7 14 14 H 1.08001 * 120.00159 * 0.02562 * 13 10 9 15 15 C 1.37877 * 120.00122 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00520 * 180.02562 * 15 13 10 17 17 Si 1.86803 * 119.99955 * 0.02562 * 15 13 10 18 18 H 1.48505 * 109.46858 * 89.99504 * 17 15 13 19 19 H 1.48498 * 109.47268 * 209.99927 * 17 15 13 20 20 H 1.48500 * 109.47259 * 330.00183 * 17 15 13 21 21 C 1.36513 * 113.40232 * 359.48708 * 4 3 2 22 22 S 1.70734 * 124.59623 * 179.68721 * 2 1 3 23 23 H 1.08998 * 109.46958 * 180.33577 * 1 2 3 24 24 H 1.08996 * 109.46970 * 300.33183 * 1 2 3 25 25 H 1.08999 * 109.46761 * 60.33654 * 1 2 3 26 26 H 1.08003 * 119.99352 * 304.31158 * 5 4 3 27 27 H 1.07993 * 120.00013 * 178.05839 * 6 5 4 28 28 H 0.97000 * 119.99907 * 0.02562 * 9 7 6 29 29 H 1.08999 * 109.46839 * 299.99583 * 12 10 9 30 30 H 1.08995 * 109.47370 * 59.99521 * 12 10 9 31 31 H 1.08992 * 109.47093 * 179.97438 * 12 10 9 32 32 H 0.96997 * 120.00269 * 180.02562 * 16 15 13 33 33 H 1.08007 * 125.64210 * 180.28511 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2373 1.0586 0.0000 4 6 3.5581 0.8556 -0.0047 5 6 4.5405 1.9454 -0.0106 6 6 5.4907 2.0044 0.9498 7 6 5.5127 1.0370 1.9852 8 8 6.1200 -0.0068 1.8304 9 7 4.8611 1.2726 3.1413 10 6 4.8842 0.2728 4.2119 11 1 4.8821 -0.7262 3.7762 12 6 6.1467 0.4585 5.0560 13 6 3.6672 0.4429 5.0843 14 1 2.9483 1.2179 4.8631 15 6 3.4711 -0.3915 6.1642 16 7 2.4088 -0.2435 6.9253 17 14 4.7142 -1.7324 6.5464 18 1 5.7525 -1.1979 7.4638 19 1 4.0242 -2.8775 7.1930 20 1 5.3543 -2.1878 5.2862 21 6 3.9038 -0.4650 0.0026 22 16 2.4764 -1.4054 0.0077 23 1 -0.3633 -1.0276 0.0060 24 1 -0.3633 0.5190 0.8870 25 1 -0.3633 0.5086 -0.8930 26 1 4.5075 2.6979 -0.7846 27 1 6.2329 2.7885 0.9276 28 1 4.3769 2.1040 3.2644 29 1 7.0269 0.3355 4.4250 30 1 6.1488 1.4576 5.4917 31 1 6.1637 -0.2850 5.8527 32 1 2.2710 -0.8303 7.6852 33 1 4.9123 -0.8517 0.0049 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701299830.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:10 Heat of formation + Delta-G solvation = 25.751306 kcal Electronic energy + Delta-G solvation = -17907.624105 eV Core-core repulsion = 15060.842430 eV Total energy + Delta-G solvation = -2846.781675 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.91890 -38.83682 -35.06694 -33.88277 -32.34604 -31.27380 -29.62707 -27.86548 -25.31907 -24.96840 -22.56019 -20.63944 -19.81192 -19.04445 -18.04158 -16.71345 -16.00344 -15.60527 -15.36228 -14.90110 -14.44959 -14.26857 -13.58782 -13.20513 -13.07545 -12.71275 -12.57629 -12.37405 -12.20142 -12.06126 -11.78116 -11.41313 -11.16237 -10.83783 -10.18776 -9.85515 -9.65556 -9.48053 -9.31230 -9.21939 -9.18931 -8.74989 -8.25120 -8.13098 -6.20084 -4.22145 0.86367 1.53809 1.67332 2.04857 2.96416 3.15815 3.22840 3.34249 3.38888 4.17860 4.28007 4.31811 4.97006 5.14406 5.23784 5.30643 5.50259 5.54822 5.58721 5.77383 5.90403 6.14921 6.24628 6.31596 6.38222 6.50342 6.56860 6.85578 7.20289 7.29915 7.52839 7.82602 8.15204 8.54086 8.76813 8.92410 9.40747 10.92175 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018104 B = 0.007225 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.249958 B = 3874.299140 C = 4637.698568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.019 3.981 3 N -0.449 5.449 4 C 0.064 3.936 5 C -0.032 4.032 6 C -0.172 4.172 7 C 0.540 3.460 8 O -0.559 6.559 9 N -0.692 5.692 10 C 0.236 3.764 11 H 0.046 0.954 12 C -0.160 4.160 13 C -0.532 4.532 14 H 0.079 0.921 15 C 0.078 3.922 16 N -0.892 5.892 17 Si 0.884 3.116 18 H -0.276 1.276 19 H -0.294 1.294 20 H -0.263 1.263 21 C -0.260 4.260 22 S 0.189 5.811 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.138 0.862 27 H 0.149 0.851 28 H 0.396 0.604 29 H 0.036 0.964 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.267 0.733 33 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.048 1.448 -14.536 14.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.259 4.259 3 N -0.163 5.163 4 C -0.069 4.069 5 C -0.054 4.054 6 C -0.195 4.195 7 C 0.326 3.674 8 O -0.440 6.440 9 N -0.339 5.339 10 C 0.133 3.867 11 H 0.064 0.936 12 C -0.219 4.219 13 C -0.570 4.570 14 H 0.097 0.903 15 C -0.125 4.125 16 N -0.529 5.529 17 Si 0.714 3.286 18 H -0.203 1.203 19 H -0.221 1.221 20 H -0.187 1.187 21 C -0.400 4.400 22 S 0.446 5.554 23 H 0.096 0.904 24 H 0.107 0.893 25 H 0.102 0.898 26 H 0.156 0.844 27 H 0.166 0.834 28 H 0.230 0.770 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -0.256 0.072 -14.439 14.442 hybrid contribution 1.191 0.537 0.586 1.432 sum 0.935 0.610 -13.853 13.898 Atomic orbital electron populations 1.20375 0.85284 1.03358 1.04269 1.26965 1.02015 0.91704 1.05240 1.66884 1.03249 1.30865 1.15340 1.19481 0.89589 0.92222 1.05582 1.21238 0.91196 0.94927 0.98002 1.22332 1.00366 1.00408 0.96367 1.17239 0.79756 0.87239 0.83141 1.90781 1.44650 1.27106 1.81498 1.46303 1.50505 1.22095 1.15035 1.19083 0.94144 0.88854 0.84660 0.93595 1.22441 0.98626 1.01198 0.99596 1.21032 1.06028 1.18901 1.11045 0.90308 1.24823 0.95355 0.96890 0.95433 1.69870 1.27178 1.38782 1.17089 0.86899 0.80981 0.81500 0.79238 1.20298 1.22122 1.18739 1.27067 1.05468 0.96934 1.10527 1.82660 0.95628 1.12179 1.64922 0.90427 0.89294 0.89828 0.84427 0.83377 0.77021 0.94538 0.92801 0.93495 0.92333 0.79763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.47 36.00 0.38 -0.42 16 2 C 0.02 0.29 7.33 -13.63 -0.10 0.19 16 3 N -0.45 -7.57 10.68 -8.37 -0.09 -7.66 16 4 C 0.06 1.06 5.91 -84.28 -0.50 0.56 16 5 C -0.03 -0.46 10.11 -37.23 -0.38 -0.83 16 6 C -0.17 -2.55 9.73 -39.33 -0.38 -2.93 16 7 C 0.54 10.51 5.51 -14.93 -0.08 10.43 16 8 O -0.56 -12.56 15.07 5.14 0.08 -12.48 16 9 N -0.69 -14.45 5.06 -57.81 -0.29 -14.74 16 10 C 0.24 5.78 2.15 -69.08 -0.15 5.63 16 11 H 0.05 1.24 6.63 -51.93 -0.34 0.90 16 12 C -0.16 -3.67 8.96 37.16 0.33 -3.33 16 13 C -0.53 -14.70 9.31 -34.44 -0.32 -15.02 16 14 H 0.08 2.32 7.98 -52.49 -0.42 1.90 16 15 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 16 N -0.89 -26.65 13.96 55.43 0.77 -25.87 16 17 Si 0.88 22.02 24.37 -169.99 -4.14 17.88 16 18 H -0.28 -6.66 6.87 56.52 0.39 -6.27 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.26 -6.51 6.53 56.52 0.37 -6.14 16 21 C -0.26 -4.34 9.49 30.11 0.29 -4.05 16 22 S 0.19 2.73 22.89 -107.50 -2.46 0.27 16 23 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 24 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 27 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 28 H 0.40 7.64 8.50 -40.82 -0.35 7.29 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 32 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.19 3.18 6.86 -52.48 -0.36 2.82 16 LS Contribution 295.29 15.07 4.45 4.45 Total: -1.00 -33.01 295.29 -6.47 -39.49 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -3.78 Total: 6.31 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -1.01 Total: -7.65 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.39 Total: -48.27 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.08 Total: -12.48 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.14 Total: 17.88 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -2.46 Total: 0.27 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.01 -6.47 -39.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701299830.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.237 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds