Wall clock time and date at job start Mon Mar 30 2020 04:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.28608 * 124.59879 * 2 1 4 4 C 1.33640 * 115.86072 * 180.22175 * 3 2 1 5 5 C 1.46721 * 123.29734 * 179.75815 * 4 3 2 6 6 C 1.35227 * 120.00262 * 124.58789 * 5 4 3 7 7 C 1.41716 * 119.99711 * 358.06728 * 6 5 4 8 8 O 1.21752 * 120.00045 * 87.92412 * 7 6 5 9 9 N 1.34782 * 119.99655 * 267.92610 * 7 6 5 10 10 C 1.46497 * 119.99669 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47336 * 324.99725 * 10 9 7 12 12 C 1.53000 * 109.47228 * 85.00225 * 10 9 7 13 13 C 1.50701 * 109.46833 * 204.99782 * 10 9 7 14 14 H 1.08001 * 120.00159 * 0.02562 * 13 10 9 15 15 C 1.37877 * 120.00122 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00520 * 180.02562 * 15 13 10 17 17 Si 1.86803 * 119.99955 * 0.02562 * 15 13 10 18 18 H 1.48505 * 109.46858 * 89.99504 * 17 15 13 19 19 H 1.48498 * 109.47268 * 209.99927 * 17 15 13 20 20 H 1.48500 * 109.47259 * 330.00183 * 17 15 13 21 21 C 1.36513 * 113.40232 * 359.48708 * 4 3 2 22 22 S 1.70734 * 124.59623 * 179.68721 * 2 1 3 23 23 H 1.08998 * 109.46958 * 180.33577 * 1 2 3 24 24 H 1.08996 * 109.46970 * 300.33183 * 1 2 3 25 25 H 1.08999 * 109.46761 * 60.33654 * 1 2 3 26 26 H 1.08003 * 119.99352 * 304.31158 * 5 4 3 27 27 H 1.07993 * 120.00013 * 178.05839 * 6 5 4 28 28 H 0.97000 * 119.99907 * 0.02562 * 9 7 6 29 29 H 1.08999 * 109.46839 * 299.99583 * 12 10 9 30 30 H 1.08995 * 109.47370 * 59.99521 * 12 10 9 31 31 H 1.08992 * 109.47093 * 179.97438 * 12 10 9 32 32 H 0.96997 * 120.00269 * 180.02562 * 16 15 13 33 33 H 1.08007 * 125.64210 * 180.28511 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2373 1.0586 0.0000 4 6 3.5581 0.8556 -0.0047 5 6 4.5405 1.9454 -0.0106 6 6 5.4907 2.0044 0.9498 7 6 5.5127 1.0370 1.9852 8 8 6.1200 -0.0068 1.8304 9 7 4.8611 1.2726 3.1413 10 6 4.8842 0.2728 4.2119 11 1 4.8821 -0.7262 3.7762 12 6 6.1467 0.4585 5.0560 13 6 3.6672 0.4429 5.0843 14 1 2.9483 1.2179 4.8631 15 6 3.4711 -0.3915 6.1642 16 7 2.4088 -0.2435 6.9253 17 14 4.7142 -1.7324 6.5464 18 1 5.7525 -1.1979 7.4638 19 1 4.0242 -2.8775 7.1930 20 1 5.3543 -2.1878 5.2862 21 6 3.9038 -0.4650 0.0026 22 16 2.4764 -1.4054 0.0077 23 1 -0.3633 -1.0276 0.0060 24 1 -0.3633 0.5190 0.8870 25 1 -0.3633 0.5086 -0.8930 26 1 4.5075 2.6979 -0.7846 27 1 6.2329 2.7885 0.9276 28 1 4.3769 2.1040 3.2644 29 1 7.0269 0.3355 4.4250 30 1 6.1488 1.4576 5.4917 31 1 6.1637 -0.2850 5.8527 32 1 2.2710 -0.8303 7.6852 33 1 4.9123 -0.8517 0.0049 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701299830.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:10 Heat of formation + Delta-G solvation = 1.431797 kcal Electronic energy + Delta-G solvation = -17908.678678 eV Core-core repulsion = 15060.842430 eV Total energy + Delta-G solvation = -2847.836248 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.28272 -40.27018 -36.91127 -35.14745 -34.36460 -32.53535 -31.30571 -29.02005 -27.27307 -26.36610 -23.98534 -22.24347 -21.29703 -20.46436 -19.41074 -18.48089 -17.61124 -17.28851 -16.78537 -16.41922 -15.74047 -15.64533 -15.12122 -15.01639 -14.39959 -14.16878 -14.14006 -13.96175 -13.54311 -13.36824 -13.19069 -12.96821 -12.83058 -12.55264 -12.17341 -11.66900 -11.33356 -10.97870 -10.88347 -10.80098 -10.64408 -10.52157 -9.90701 -9.43197 -8.40397 -6.46468 -0.34721 0.37767 0.52046 0.86424 1.24194 1.31998 1.41655 1.62991 1.76056 2.23118 2.65264 2.95319 3.16478 3.88197 4.01814 4.20941 4.32507 4.41799 4.49412 4.55372 4.66186 4.68050 4.75705 4.91191 4.96944 5.07480 5.14522 5.28210 5.38615 5.42721 5.60703 6.10028 6.53772 6.62203 6.80175 7.15346 7.36605 8.75071 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.018104 B = 0.007225 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.249958 B = 3874.299140 C = 4637.698568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.014 3.986 3 N -0.474 5.474 4 C 0.050 3.950 5 C -0.024 4.024 6 C -0.178 4.178 7 C 0.542 3.458 8 O -0.591 6.591 9 N -0.696 5.696 10 C 0.243 3.757 11 H 0.019 0.981 12 C -0.154 4.154 13 C -0.532 4.532 14 H 0.049 0.951 15 C 0.031 3.969 16 N -0.932 5.932 17 Si 0.938 3.062 18 H -0.259 1.259 19 H -0.290 1.290 20 H -0.264 1.264 21 C -0.291 4.291 22 S 0.213 5.787 23 H 0.100 0.900 24 H 0.083 0.917 25 H 0.105 0.895 26 H 0.177 0.823 27 H 0.192 0.808 28 H 0.404 0.596 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.271 0.729 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.545 1.895 -15.441 15.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.264 4.264 3 N -0.189 5.189 4 C -0.083 4.083 5 C -0.044 4.044 6 C -0.200 4.200 7 C 0.331 3.669 8 O -0.474 6.474 9 N -0.344 5.344 10 C 0.138 3.862 11 H 0.037 0.963 12 C -0.212 4.212 13 C -0.570 4.570 14 H 0.068 0.932 15 C -0.169 4.169 16 N -0.570 5.570 17 Si 0.765 3.235 18 H -0.184 1.184 19 H -0.217 1.217 20 H -0.189 1.189 21 C -0.431 4.431 22 S 0.471 5.529 23 H 0.118 0.882 24 H 0.102 0.898 25 H 0.123 0.877 26 H 0.195 0.805 27 H 0.208 0.792 28 H 0.238 0.762 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.338 0.535 -15.359 15.372 hybrid contribution 0.890 0.394 0.804 1.263 sum 1.228 0.929 -14.555 14.636 Atomic orbital electron populations 1.20576 0.82670 1.05146 1.04995 1.27706 1.03695 0.91510 1.03516 1.66969 1.03429 1.31740 1.16805 1.19967 0.90271 0.92948 1.05073 1.21650 0.89743 0.94629 0.98424 1.22398 1.02086 1.00586 0.94942 1.17913 0.78269 0.87538 0.83201 1.90765 1.45867 1.28812 1.81944 1.46208 1.51361 1.21722 1.15095 1.18732 0.93630 0.88618 0.85172 0.96298 1.22330 0.97941 1.01699 0.99248 1.21193 1.06602 1.17837 1.11393 0.93241 1.25544 0.96973 0.98980 0.95411 1.69976 1.28968 1.40145 1.17946 0.86015 0.79212 0.79026 0.79205 1.18421 1.21670 1.18874 1.27107 1.05852 0.97801 1.12380 1.82467 0.94528 1.11613 1.64318 0.88175 0.89793 0.87651 0.80549 0.79158 0.76161 0.93361 0.91618 0.94073 0.91999 0.80927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.49 10.47 71.24 0.75 -0.74 16 2 C 0.01 0.40 7.33 88.58 0.65 1.05 16 3 N -0.47 -15.56 10.68 -180.39 -1.93 -17.48 16 4 C 0.05 1.63 5.91 40.68 0.24 1.87 16 5 C -0.02 -0.62 10.11 23.79 0.24 -0.37 16 6 C -0.18 -4.85 9.73 22.43 0.22 -4.64 16 7 C 0.54 20.56 5.51 85.10 0.47 21.03 16 8 O -0.59 -26.35 15.07 -4.51 -0.07 -26.42 16 9 N -0.70 -28.70 5.06 -455.00 -2.30 -31.00 16 10 C 0.24 11.87 2.15 44.25 0.10 11.96 16 11 H 0.02 1.04 6.63 -2.39 -0.02 1.02 16 12 C -0.15 -6.82 8.96 71.98 0.65 -6.17 16 13 C -0.53 -29.74 9.31 25.60 0.24 -29.51 16 14 H 0.05 2.99 7.98 -2.91 -0.02 2.97 16 15 C 0.03 1.76 5.45 84.65 0.46 2.22 16 16 N -0.93 -56.22 13.96 21.45 0.30 -55.93 16 17 Si 0.94 45.12 24.37 68.60 1.67 46.79 16 18 H -0.26 -11.66 6.87 99.48 0.68 -10.97 16 19 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 20 H -0.26 -12.67 6.53 99.48 0.65 -12.02 16 21 C -0.29 -9.72 9.49 67.42 0.64 -9.08 16 22 S 0.21 6.07 22.89 -56.49 -1.29 4.77 16 23 H 0.10 1.53 8.12 -2.39 -0.02 1.51 16 24 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 25 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.18 3.18 8.06 -2.91 -0.02 3.16 16 27 H 0.19 3.52 8.06 -2.91 -0.02 3.49 16 28 H 0.40 15.37 8.50 -92.71 -0.79 14.59 16 29 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.04 1.85 3.27 -2.39 -0.01 1.84 16 32 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 33 H 0.17 6.11 6.86 -2.91 -0.02 6.09 16 Total: -1.00 -71.54 295.29 1.29 -70.24 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.27 Total: 21.39 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 4.64 Total: -12.38 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -3.93 Total: -104.41 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.07 Total: -26.42 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.67 Total: 46.79 kcal Atomic # 16 Polarization: 6.07 SS G_CDS: -1.29 Total: 4.77 kcal Total: -71.54 1.29 -70.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701299830.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.676 kcal (2) G-P(sol) polarization free energy of solvation -71.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds