Wall clock time and date at job start Mon Mar 30 2020 04:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.46999 * 2 1 4 4 C 1.36897 * 120.00200 * 80.54890 * 3 2 1 5 5 H 1.07998 * 119.99921 * 218.05901 * 4 3 2 6 6 C 1.39013 * 120.00150 * 38.05986 * 4 3 2 7 7 N 1.31387 * 120.00159 * 30.78264 * 6 4 3 8 8 Si 1.86805 * 120.00118 * 210.78076 * 6 4 3 9 9 H 1.48497 * 109.47108 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47010 * 119.99970 * 8 6 4 11 11 H 1.48505 * 109.47171 * 240.00023 * 8 6 4 12 12 C 1.34774 * 119.99566 * 260.54663 * 3 2 1 13 13 O 1.21651 * 120.00052 * 173.19320 * 12 3 2 14 14 C 1.47277 * 120.00263 * 353.47260 * 12 3 2 15 15 C 1.40031 * 120.61698 * 39.55891 * 14 12 3 16 16 C 1.38326 * 118.36825 * 179.71564 * 15 14 12 17 17 C 1.38423 * 119.52667 * 0.60074 * 16 15 14 18 18 N 1.31825 * 121.24347 * 359.65797 * 17 16 15 19 19 C 1.32502 * 121.77223 * 0.02562 * 18 17 16 20 20 S 1.76197 * 119.83753 * 179.97438 * 19 18 17 21 21 C 1.80998 * 100.00013 * 0.02678 * 20 19 18 22 22 H 1.09005 * 109.47436 * 289.10497 * 1 2 3 23 23 H 1.08995 * 109.47641 * 49.10415 * 1 2 3 24 24 H 1.08995 * 109.47295 * 169.10942 * 1 2 3 25 25 H 1.08998 * 109.47197 * 239.99577 * 2 1 3 26 26 H 1.09001 * 109.46926 * 119.99240 * 2 1 3 27 27 H 0.96994 * 120.00103 * 180.02562 * 7 6 4 28 28 H 1.08002 * 120.81737 * 359.97438 * 15 14 12 29 29 H 1.08000 * 120.23480 * 180.26462 * 16 15 14 30 30 H 1.07995 * 119.37546 * 179.67538 * 17 16 15 31 31 H 1.08997 * 109.47248 * 59.99392 * 21 20 19 32 32 H 1.09003 * 109.47286 * 179.97438 * 21 20 19 33 33 H 1.09002 * 109.47397 * 299.99641 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0629 2.0915 1.1694 5 1 1.8138 3.1424 1.1728 6 6 2.4288 1.4602 2.3526 7 7 3.2713 0.4523 2.3262 8 14 1.7227 2.0447 3.9803 9 1 0.8049 3.1871 3.7400 10 1 0.9742 0.9344 4.6223 11 1 2.8281 2.4775 4.8726 12 6 2.4236 1.9526 -1.1514 13 8 2.7114 3.1343 -1.1756 14 6 2.5122 1.1478 -2.3816 15 6 1.5372 0.1872 -2.6772 16 6 1.6630 -0.5383 -3.8482 17 6 2.7440 -0.3069 -4.6812 18 7 3.6551 0.5981 -4.3836 19 6 3.5810 1.3256 -3.2787 20 16 4.8279 2.5210 -2.9308 21 6 5.8883 2.3001 -4.3809 22 1 -0.3634 0.3364 0.9711 23 1 -0.3634 0.6727 -0.7768 24 1 -0.3633 -1.0091 -0.1941 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 3.5263 0.0116 3.1517 28 1 0.7051 0.0197 -2.0093 29 1 0.9260 -1.2837 -4.1080 30 1 2.8426 -0.8784 -5.5923 31 1 5.3156 2.5076 -5.2848 32 1 6.7333 2.9862 -4.3211 33 1 6.2545 1.2739 -4.4104 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706288061.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:21 Heat of formation + Delta-G solvation = 23.406332 kcal Electronic energy + Delta-G solvation = -18292.135503 eV Core-core repulsion = 15445.252142 eV Total energy + Delta-G solvation = -2846.883361 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.01507 -38.04335 -35.17066 -32.90538 -31.63852 -30.84579 -29.68221 -28.50945 -25.60108 -23.58857 -23.31221 -22.28564 -19.66627 -17.66418 -16.92219 -16.41664 -15.94735 -15.22161 -14.99796 -14.45072 -14.05206 -13.87082 -13.70369 -13.48818 -13.01674 -12.89976 -12.40211 -12.01470 -11.88077 -11.79604 -11.56089 -11.14575 -11.07707 -10.65039 -10.38383 -10.30425 -10.01300 -9.56507 -9.37266 -9.33306 -8.87969 -8.38244 -7.54990 -7.02212 -6.47363 -3.99065 1.16632 1.47123 2.03219 2.73716 3.10209 3.22670 3.29628 3.68615 4.02481 4.26452 4.66650 4.84341 4.92802 5.09416 5.32904 5.43339 5.47397 5.51452 5.56241 5.75246 5.87937 6.06155 6.08106 6.12970 6.31412 6.32348 6.40649 6.76526 6.82919 7.03044 7.50726 7.99891 8.19372 8.41165 9.09042 9.28098 9.92028 10.55626 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.023721 B = 0.007170 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.123778 B = 3904.475871 C = 4687.707174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.082 3.918 3 N -0.420 5.420 4 C -0.316 4.316 5 H 0.097 0.903 6 C 0.047 3.953 7 N -0.844 5.844 8 Si 0.908 3.092 9 H -0.265 1.265 10 H -0.279 1.279 11 H -0.280 1.280 12 C 0.489 3.511 13 O -0.556 6.556 14 C -0.133 4.133 15 C -0.059 4.059 16 C -0.192 4.192 17 C 0.109 3.891 18 N -0.497 5.497 19 C 0.139 3.861 20 S 0.008 5.992 21 C -0.166 4.166 22 H 0.064 0.936 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.096 0.904 27 H 0.269 0.731 28 H 0.154 0.846 29 H 0.134 0.866 30 H 0.153 0.847 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.152 -4.938 -9.230 10.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.042 4.042 3 N -0.138 5.138 4 C -0.444 4.444 5 H 0.115 0.885 6 C -0.161 4.161 7 N -0.479 5.479 8 Si 0.734 3.266 9 H -0.189 1.189 10 H -0.204 1.204 11 H -0.206 1.206 12 C 0.277 3.723 13 O -0.439 6.439 14 C -0.145 4.145 15 C -0.087 4.087 16 C -0.215 4.215 17 C -0.053 4.053 18 N -0.210 5.210 19 C -0.110 4.110 20 S 0.249 5.751 21 C -0.336 4.336 22 H 0.083 0.917 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.114 0.886 27 H 0.079 0.921 28 H 0.172 0.828 29 H 0.152 0.848 30 H 0.171 0.829 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.922 -3.481 -8.714 9.429 hybrid contribution -1.182 -1.200 0.290 1.709 sum -2.104 -4.680 -8.424 9.864 Atomic orbital electron populations 1.22195 0.97375 1.00260 1.02562 1.21880 0.92736 0.85922 1.03658 1.43439 1.52625 1.11598 1.06115 1.19404 1.45829 0.96222 0.82910 0.88541 1.25388 0.94036 0.96746 0.99946 1.70124 1.25209 1.23403 1.29122 0.86180 0.79543 0.79179 0.81731 1.18858 1.20426 1.20628 1.17980 0.82589 0.88083 0.83629 1.90653 1.53079 1.15070 1.85117 1.21008 0.96127 0.99578 0.97797 1.22331 0.98174 0.92342 0.95847 1.21924 1.00618 1.02851 0.96137 1.22653 0.90008 0.93962 0.98634 1.67986 1.28477 1.07558 1.16967 1.23233 0.97414 0.98100 0.92251 1.86942 1.18620 1.42555 1.26970 1.23581 1.02624 1.05578 1.01769 0.91676 0.93049 0.92757 0.91719 0.88606 0.92052 0.82833 0.84825 0.82929 0.90023 0.88805 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 8.88 37.16 0.33 -2.52 16 2 C 0.08 1.73 5.27 -4.04 -0.02 1.71 16 3 N -0.42 -10.60 2.54 -116.09 -0.29 -10.89 16 4 C -0.32 -8.62 8.75 -15.00 -0.13 -8.75 16 5 H 0.10 2.77 7.80 -52.49 -0.41 2.36 16 6 C 0.05 1.20 4.78 -17.45 -0.08 1.12 16 7 N -0.84 -22.43 12.02 55.50 0.67 -21.77 16 8 Si 0.91 19.85 29.65 -169.99 -5.04 14.81 16 9 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 10 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 C 0.49 12.44 6.93 -12.59 -0.09 12.35 16 13 O -0.56 -15.75 15.05 5.23 0.08 -15.67 16 14 C -0.13 -2.85 5.34 -104.63 -0.56 -3.41 16 15 C -0.06 -1.03 7.47 -38.88 -0.29 -1.32 16 16 C -0.19 -2.68 10.09 -39.48 -0.40 -3.08 16 17 C 0.11 1.57 11.16 -17.49 -0.20 1.38 16 18 N -0.50 -8.80 9.13 -11.66 -0.11 -8.90 16 19 C 0.14 2.86 7.01 -16.35 -0.11 2.74 16 20 S 0.01 0.16 20.44 -107.50 -2.20 -2.03 16 21 C -0.17 -2.45 9.65 101.05 0.97 -1.47 16 22 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 23 H 0.05 0.86 7.01 -51.93 -0.36 0.49 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 1.26 4.55 -51.93 -0.24 1.03 16 26 H 0.10 2.22 5.95 -51.93 -0.31 1.91 16 27 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 28 H 0.15 2.46 3.61 -52.49 -0.19 2.27 16 29 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.15 1.60 8.06 -52.49 -0.42 1.17 16 31 H 0.08 1.16 8.12 -51.92 -0.42 0.73 16 32 H 0.09 1.15 8.14 -51.91 -0.42 0.73 16 33 H 0.08 1.16 8.12 -51.92 -0.42 0.74 16 LS Contribution 289.49 15.07 4.36 4.36 Total: -1.00 -31.52 289.49 -6.71 -38.22 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -3.60 Total: 3.13 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -0.58 Total: -1.25 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.27 Total: -41.56 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.08 Total: -15.67 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.04 Total: 14.81 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.20 Total: -2.03 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.52 -6.71 -38.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706288061.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.627 kcal (2) G-P(sol) polarization free energy of solvation -31.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds