Wall clock time and date at job start Mon Mar 30 2020 04:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.46999 * 2 1 4 4 C 1.36897 * 120.00200 * 80.54890 * 3 2 1 5 5 H 1.07998 * 119.99921 * 218.05901 * 4 3 2 6 6 C 1.39013 * 120.00150 * 38.05986 * 4 3 2 7 7 N 1.31387 * 120.00159 * 30.78264 * 6 4 3 8 8 Si 1.86805 * 120.00118 * 210.78076 * 6 4 3 9 9 H 1.48497 * 109.47108 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47010 * 119.99970 * 8 6 4 11 11 H 1.48505 * 109.47171 * 240.00023 * 8 6 4 12 12 C 1.34774 * 119.99566 * 260.54663 * 3 2 1 13 13 O 1.21651 * 120.00052 * 173.19320 * 12 3 2 14 14 C 1.47277 * 120.00263 * 353.47260 * 12 3 2 15 15 C 1.40031 * 120.61698 * 39.55891 * 14 12 3 16 16 C 1.38326 * 118.36825 * 179.71564 * 15 14 12 17 17 C 1.38423 * 119.52667 * 0.60074 * 16 15 14 18 18 N 1.31825 * 121.24347 * 359.65797 * 17 16 15 19 19 C 1.32502 * 121.77223 * 0.02562 * 18 17 16 20 20 S 1.76197 * 119.83753 * 179.97438 * 19 18 17 21 21 C 1.80998 * 100.00013 * 0.02678 * 20 19 18 22 22 H 1.09005 * 109.47436 * 289.10497 * 1 2 3 23 23 H 1.08995 * 109.47641 * 49.10415 * 1 2 3 24 24 H 1.08995 * 109.47295 * 169.10942 * 1 2 3 25 25 H 1.08998 * 109.47197 * 239.99577 * 2 1 3 26 26 H 1.09001 * 109.46926 * 119.99240 * 2 1 3 27 27 H 0.96994 * 120.00103 * 180.02562 * 7 6 4 28 28 H 1.08002 * 120.81737 * 359.97438 * 15 14 12 29 29 H 1.08000 * 120.23480 * 180.26462 * 16 15 14 30 30 H 1.07995 * 119.37546 * 179.67538 * 17 16 15 31 31 H 1.08997 * 109.47248 * 59.99392 * 21 20 19 32 32 H 1.09003 * 109.47286 * 179.97438 * 21 20 19 33 33 H 1.09002 * 109.47397 * 299.99641 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0629 2.0915 1.1694 5 1 1.8138 3.1424 1.1728 6 6 2.4288 1.4602 2.3526 7 7 3.2713 0.4523 2.3262 8 14 1.7227 2.0447 3.9803 9 1 0.8049 3.1871 3.7400 10 1 0.9742 0.9344 4.6223 11 1 2.8281 2.4775 4.8726 12 6 2.4236 1.9526 -1.1514 13 8 2.7114 3.1343 -1.1756 14 6 2.5122 1.1478 -2.3816 15 6 1.5372 0.1872 -2.6772 16 6 1.6630 -0.5383 -3.8482 17 6 2.7440 -0.3069 -4.6812 18 7 3.6551 0.5981 -4.3836 19 6 3.5810 1.3256 -3.2787 20 16 4.8279 2.5210 -2.9308 21 6 5.8883 2.3001 -4.3809 22 1 -0.3634 0.3364 0.9711 23 1 -0.3634 0.6727 -0.7768 24 1 -0.3633 -1.0091 -0.1941 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 3.5263 0.0116 3.1517 28 1 0.7051 0.0197 -2.0093 29 1 0.9260 -1.2837 -4.1080 30 1 2.8426 -0.8784 -5.5923 31 1 5.3156 2.5076 -5.2848 32 1 6.7333 2.9862 -4.3211 33 1 6.2545 1.2739 -4.4104 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706288061.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:21 Heat of formation + Delta-G solvation = 2.630649 kcal Electronic energy + Delta-G solvation = -18293.036404 eV Core-core repulsion = 15445.252142 eV Total energy + Delta-G solvation = -2847.784262 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.51642 -39.71652 -37.04797 -34.60676 -33.23033 -32.26173 -31.32807 -29.72850 -27.45593 -25.08664 -24.69117 -23.89078 -21.37809 -19.09731 -18.74981 -18.07709 -17.47229 -16.88692 -16.63967 -16.11283 -15.62695 -15.30328 -15.09081 -15.02419 -14.59902 -14.13702 -13.78793 -13.67905 -13.55425 -13.26741 -12.95150 -12.84655 -12.71636 -12.37079 -12.10324 -11.98114 -11.46228 -11.11694 -10.85903 -10.72858 -10.56401 -10.20404 -9.48747 -8.54332 -8.43628 -6.05520 -0.21231 0.14663 0.60296 1.34529 1.41230 1.43857 1.55929 2.02168 2.28271 2.69037 2.91943 3.00915 3.59602 3.85954 3.91667 4.07655 4.23913 4.31290 4.35149 4.39990 4.50250 4.59988 4.70046 4.90028 4.94351 4.99188 5.13855 5.23836 5.44371 5.48636 5.61989 6.17070 6.48450 6.70327 7.12508 7.36835 8.00909 8.59555 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.023721 B = 0.007170 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.123778 B = 3904.475871 C = 4687.707174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.082 3.918 3 N -0.433 5.433 4 C -0.352 4.352 5 H 0.065 0.935 6 C 0.017 3.983 7 N -0.872 5.872 8 Si 0.975 3.025 9 H -0.268 1.268 10 H -0.259 1.259 11 H -0.280 1.280 12 C 0.479 3.521 13 O -0.604 6.604 14 C -0.171 4.171 15 C -0.061 4.061 16 C -0.168 4.168 17 C 0.118 3.882 18 N -0.502 5.502 19 C 0.129 3.871 20 S -0.085 6.085 21 C -0.136 4.136 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.099 0.901 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.276 0.724 28 H 0.165 0.835 29 H 0.189 0.811 30 H 0.206 0.794 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.424 -7.730 -11.121 13.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.041 4.041 3 N -0.151 5.151 4 C -0.480 4.480 5 H 0.082 0.918 6 C -0.189 4.189 7 N -0.507 5.507 8 Si 0.797 3.203 9 H -0.193 1.193 10 H -0.183 1.183 11 H -0.205 1.205 12 C 0.269 3.731 13 O -0.491 6.491 14 C -0.184 4.184 15 C -0.088 4.088 16 C -0.191 4.191 17 C -0.043 4.043 18 N -0.215 5.215 19 C -0.119 4.119 20 S 0.155 5.845 21 C -0.305 4.305 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.117 0.883 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.183 0.817 29 H 0.206 0.794 30 H 0.222 0.778 31 H 0.107 0.893 32 H 0.136 0.864 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.203 -6.306 -10.608 12.536 hybrid contribution -0.753 -0.432 0.645 1.081 sum -2.956 -6.738 -9.963 12.386 Atomic orbital electron populations 1.22117 0.94213 1.03018 1.02019 1.22033 0.95274 0.83623 1.03162 1.43660 1.53015 1.12905 1.05499 1.19266 1.48202 0.95629 0.84877 0.91766 1.26117 0.93489 0.96740 1.02559 1.70168 1.25747 1.24441 1.30329 0.85202 0.78663 0.79046 0.77345 1.19268 1.18296 1.20544 1.18652 0.81344 0.87978 0.85119 1.90589 1.54776 1.17369 1.86322 1.20792 0.98828 1.01659 0.97083 1.22561 0.97298 0.91428 0.97517 1.22496 1.00937 1.01979 0.93664 1.23652 0.88620 0.92198 0.99857 1.68046 1.29740 1.08102 1.15628 1.23040 0.97015 0.98674 0.93180 1.87160 1.21486 1.44387 1.31423 1.23519 1.01796 1.06528 0.98625 0.93072 0.92682 0.88276 0.90157 0.90990 0.91410 0.81743 0.79356 0.77769 0.89259 0.86445 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.12 8.88 71.98 0.64 -4.48 16 2 C 0.08 3.47 5.27 86.38 0.46 3.93 16 3 N -0.43 -22.85 2.54 -639.42 -1.62 -24.47 16 4 C -0.35 -20.31 8.75 84.09 0.74 -19.57 16 5 H 0.06 4.01 7.80 -2.91 -0.02 3.98 16 6 C 0.02 0.88 4.78 84.95 0.41 1.29 16 7 N -0.87 -47.59 12.02 21.68 0.26 -47.33 16 8 Si 0.97 41.75 29.65 68.60 2.03 43.78 16 9 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 10 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 12 C 0.48 25.71 6.93 86.62 0.60 26.31 16 13 O -0.60 -36.89 15.05 -4.19 -0.06 -36.95 16 14 C -0.17 -7.43 5.34 -19.87 -0.11 -7.53 16 15 C -0.06 -1.96 7.47 22.73 0.17 -1.79 16 16 C -0.17 -3.80 10.09 22.33 0.23 -3.57 16 17 C 0.12 2.81 11.16 84.74 0.95 3.76 16 18 N -0.50 -16.52 9.13 -190.80 -1.74 -18.26 16 19 C 0.13 5.30 7.01 85.19 0.60 5.90 16 20 S -0.09 -3.60 20.44 -56.49 -1.15 -4.75 16 21 C -0.14 -3.89 9.65 113.37 1.09 -2.80 16 22 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 23 H 0.05 1.76 7.01 -2.39 -0.02 1.74 16 24 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.08 3.07 4.55 -2.39 -0.01 3.06 16 26 H 0.07 3.39 5.95 -2.39 -0.01 3.37 16 27 H 0.28 13.87 8.31 -92.71 -0.77 13.09 16 28 H 0.17 4.81 3.61 -2.91 -0.01 4.80 16 29 H 0.19 2.28 8.06 -2.91 -0.02 2.25 16 30 H 0.21 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.09 2.40 8.12 -2.40 -0.02 2.38 16 32 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.09 2.36 8.12 -2.39 -0.02 2.34 16 Total: -1.00 -76.02 289.49 4.61 -71.41 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 1.13 Total: 15.12 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 5.76 Total: 1.45 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -3.10 Total: -90.06 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -0.06 Total: -36.95 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.15 Total: -4.75 kcal Total: -76.02 4.61 -71.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706288061.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.043 kcal (2) G-P(sol) polarization free energy of solvation -76.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds