Wall clock time and date at job start Mon Mar 30 2020 04:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46921 * 2 1 4 4 O 1.42904 * 109.46856 * 240.00360 * 2 1 3 5 5 C 1.35900 * 117.00014 * 84.90281 * 4 2 1 6 6 C 1.38746 * 120.05557 * 354.52788 * 5 4 2 7 7 C 1.38128 * 119.94294 * 179.97438 * 6 5 4 8 8 C 1.38286 * 120.05547 * 359.97438 * 7 6 5 9 9 C 1.38242 * 120.11235 * 0.03590 * 8 7 6 10 10 C 1.50701 * 119.97453 * 179.97438 * 9 8 7 11 11 O 1.42905 * 109.46662 * 90.00663 * 10 9 8 12 12 C 1.38169 * 120.05419 * 359.68714 * 9 8 7 13 13 C 1.50697 * 109.47052 * 120.00313 * 2 1 3 14 14 O 1.21206 * 119.99844 * 119.72363 * 13 2 1 15 15 O 1.34307 * 120.00126 * 299.99757 * 13 2 1 16 16 C 1.34923 * 117.00102 * 180.02562 * 15 13 2 17 17 H 1.08001 * 119.99996 * 0.02562 * 16 15 13 18 18 C 1.38758 * 119.99893 * 179.97438 * 16 15 13 19 19 N 1.31441 * 120.00167 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99823 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47207 * 60.00137 * 20 18 16 22 22 H 1.48495 * 109.47351 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47279 * 300.00099 * 20 18 16 24 24 H 1.08997 * 109.46921 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46894 * 300.00042 * 1 2 3 26 26 H 1.08995 * 109.47337 * 59.99884 * 1 2 3 27 27 H 1.07997 * 120.03265 * 359.97265 * 6 5 4 28 28 H 1.08003 * 119.96857 * 179.97438 * 7 6 5 29 29 H 1.07994 * 119.94077 * 180.02562 * 8 7 6 30 30 H 1.08995 * 109.47185 * 210.00513 * 10 9 8 31 31 H 1.09002 * 109.46867 * 330.00968 * 10 9 8 32 32 H 0.96694 * 113.99543 * 180.02562 * 11 10 9 33 33 H 1.08002 * 120.03095 * 180.29084 * 12 9 8 34 34 H 0.96996 * 119.99993 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.1105 0.0622 -2.3047 6 6 1.6558 1.3728 -2.3288 7 6 1.7634 2.1187 -3.4863 8 6 2.3241 1.5604 -4.6204 9 6 2.7778 0.2547 -4.5991 10 6 3.3878 -0.3507 -5.8369 11 8 4.7970 -0.1133 -5.8383 12 6 2.6777 -0.4937 -3.4420 13 6 2.0324 -0.7105 1.2304 14 8 2.7250 -1.6988 1.1191 15 8 1.7079 -0.2517 2.4503 16 6 2.1908 -0.9337 3.5096 17 1 2.8085 -1.8059 3.3543 18 6 1.8946 -0.5138 4.7985 19 7 1.1441 0.5486 4.9875 20 14 2.5637 -1.4576 6.2651 21 1 4.0480 -1.4560 6.2195 22 1 2.1069 -0.8098 7.5209 23 1 2.0686 -2.8569 6.2210 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.2181 1.8094 -1.4433 28 1 1.4091 3.1388 -3.5057 29 1 2.4077 2.1454 -5.5243 30 1 3.2003 -1.4244 -5.8465 31 1 2.9418 0.1040 -6.7214 32 1 5.2561 -0.4759 -6.6082 33 1 3.0365 -1.5122 -3.4243 34 1 0.9373 0.8423 5.8886 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753412665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:56 Heat of formation + Delta-G solvation = -137.725549 kcal Electronic energy + Delta-G solvation = -19480.293555 eV Core-core repulsion = 16151.377369 eV Total energy + Delta-G solvation = -3328.916186 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.35931 -39.04340 -37.86402 -36.42886 -35.06656 -32.36373 -31.87899 -31.46843 -29.66663 -26.16284 -25.70971 -24.11994 -22.49422 -21.65033 -19.74101 -18.06986 -17.68947 -17.64813 -16.74781 -16.04139 -15.77443 -15.39632 -14.87395 -14.69035 -14.33417 -14.23400 -13.80412 -13.61069 -13.17857 -12.93653 -12.38538 -12.25977 -11.92994 -11.68831 -11.57659 -11.31054 -11.24779 -10.90004 -10.67875 -10.48469 -10.37471 -10.30588 -9.86740 -9.02652 -8.94515 -8.61849 -8.11457 -6.45821 -4.14107 1.20587 1.46337 2.94561 3.09926 3.18749 3.25382 3.43058 3.64711 4.00153 4.30481 4.52662 4.77457 4.83083 4.90267 5.03311 5.08462 5.13195 5.21822 5.27987 5.35120 5.49769 5.61855 5.79274 5.93645 6.03408 6.30773 6.39393 6.41196 6.49894 6.57633 6.78573 7.34445 7.38340 7.56703 7.89598 8.63700 9.02675 9.76033 10.71804 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.038544 B = 0.003766 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.263228 B = 7434.083542 C = 7845.324728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 H 0.098 0.902 4 O -0.286 6.286 5 C 0.138 3.862 6 C -0.206 4.206 7 C -0.082 4.082 8 C -0.145 4.145 9 C -0.060 4.060 10 C 0.119 3.881 11 O -0.566 6.566 12 C -0.132 4.132 13 C 0.400 3.600 14 O -0.534 6.534 15 O -0.207 6.207 16 C -0.384 4.384 17 H 0.097 0.903 18 C 0.044 3.956 19 N -0.865 5.865 20 Si 0.946 3.054 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.269 1.269 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.066 0.934 27 H 0.135 0.865 28 H 0.126 0.874 29 H 0.121 0.879 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.379 0.621 33 H 0.132 0.868 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.464 2.680 -18.630 18.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.046 3.954 3 H 0.116 0.884 4 O -0.199 6.199 5 C 0.092 3.908 6 C -0.224 4.224 7 C -0.100 4.100 8 C -0.163 4.163 9 C -0.060 4.060 10 C 0.042 3.958 11 O -0.371 6.371 12 C -0.151 4.151 13 C 0.245 3.755 14 O -0.430 6.430 15 O -0.114 6.114 16 C -0.460 4.460 17 H 0.114 0.886 18 C -0.160 4.160 19 N -0.501 5.501 20 Si 0.770 3.230 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.194 1.194 24 H 0.089 0.911 25 H 0.110 0.890 26 H 0.085 0.915 27 H 0.153 0.847 28 H 0.144 0.856 29 H 0.139 0.861 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.226 0.774 33 H 0.150 0.850 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.487 2.638 -17.843 18.044 hybrid contribution 0.325 -0.473 0.279 0.638 sum -0.162 2.166 -17.564 17.698 Atomic orbital electron populations 1.22287 0.92522 1.04138 1.03784 1.21535 0.95509 0.96182 0.82154 0.88404 1.86180 1.80790 1.37177 1.15741 1.19046 0.94528 0.90350 0.86848 1.21465 1.06309 0.94341 1.00326 1.20908 0.97550 0.99409 0.92125 1.20867 1.01926 0.94598 0.98895 1.19319 0.98364 0.94266 0.94057 1.20961 0.81487 0.98707 0.94666 1.86605 1.19525 1.81838 1.49158 1.20294 1.02663 1.01531 0.90584 1.22465 0.82275 0.85183 0.85591 1.90593 1.38399 1.26789 1.87174 1.83838 1.63641 1.51861 1.12083 1.21219 1.31997 1.11194 0.81569 0.88566 1.25335 0.96289 0.96537 0.97855 1.69975 1.34542 1.22738 1.22879 0.85704 0.79321 0.79158 0.78777 1.19399 1.20311 1.19392 0.91071 0.88971 0.91473 0.84726 0.85579 0.86079 0.92542 0.92611 0.77416 0.85048 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.10 37.16 0.34 -2.46 16 2 C 0.10 2.03 2.75 -27.88 -0.08 1.95 16 3 H 0.10 1.72 6.32 -51.93 -0.33 1.39 16 4 O -0.29 -5.62 9.33 -39.34 -0.37 -5.98 16 5 C 0.14 2.27 6.60 -39.22 -0.26 2.01 16 6 C -0.21 -2.88 8.24 -39.43 -0.32 -3.21 16 7 C -0.08 -0.97 10.04 -39.60 -0.40 -1.37 16 8 C -0.14 -1.68 9.70 -39.56 -0.38 -2.06 16 9 C -0.06 -0.75 5.51 -104.65 -0.58 -1.33 16 10 C 0.12 1.12 7.17 36.01 0.26 1.38 16 11 O -0.57 -5.82 13.64 -35.23 -0.48 -6.31 16 12 C -0.13 -1.96 9.64 -39.43 -0.38 -2.35 16 13 C 0.40 10.26 7.28 36.00 0.26 10.53 16 14 O -0.53 -15.28 15.74 -25.78 -0.41 -15.69 16 15 O -0.21 -5.90 9.65 -20.70 -0.20 -6.10 16 16 C -0.38 -11.39 9.65 30.92 0.30 -11.10 16 17 H 0.10 2.89 6.86 -52.49 -0.36 2.53 16 18 C 0.04 1.24 5.49 -17.53 -0.10 1.14 16 19 N -0.86 -24.98 13.67 55.48 0.76 -24.22 16 20 Si 0.95 21.27 29.55 -169.99 -5.02 16.25 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16 26 H 0.07 0.90 6.90 -51.93 -0.36 0.54 16 27 H 0.14 1.75 5.43 -52.49 -0.28 1.46 16 28 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 29 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 31 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.38 1.85 9.12 45.56 0.42 2.26 16 33 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 34 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 303.59 15.07 4.58 4.58 Total: -1.00 -35.62 303.59 -5.48 -41.11 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -3.00 Total: 3.22 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -1.34 Total: -6.86 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.76 Total: -24.22 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -1.45 Total: -34.07 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -35.62 -5.48 -41.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753412665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.619 kcal (2) G-P(sol) polarization free energy of solvation -35.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds