Wall clock time and date at job start Mon Mar 30 2020 04:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46921 * 2 1 4 4 O 1.42904 * 109.46856 * 240.00360 * 2 1 3 5 5 C 1.35900 * 117.00014 * 84.90281 * 4 2 1 6 6 C 1.38746 * 120.05557 * 354.52788 * 5 4 2 7 7 C 1.38128 * 119.94294 * 179.97438 * 6 5 4 8 8 C 1.38286 * 120.05547 * 359.97438 * 7 6 5 9 9 C 1.38242 * 120.11235 * 0.03590 * 8 7 6 10 10 C 1.50701 * 119.97453 * 179.97438 * 9 8 7 11 11 O 1.42905 * 109.46662 * 90.00663 * 10 9 8 12 12 C 1.38169 * 120.05419 * 359.68714 * 9 8 7 13 13 C 1.50697 * 109.47052 * 120.00313 * 2 1 3 14 14 O 1.21206 * 119.99844 * 119.72363 * 13 2 1 15 15 O 1.34307 * 120.00126 * 299.99757 * 13 2 1 16 16 C 1.34923 * 117.00102 * 180.02562 * 15 13 2 17 17 H 1.08001 * 119.99996 * 0.02562 * 16 15 13 18 18 C 1.38758 * 119.99893 * 179.97438 * 16 15 13 19 19 N 1.31441 * 120.00167 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99823 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47207 * 60.00137 * 20 18 16 22 22 H 1.48495 * 109.47351 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47279 * 300.00099 * 20 18 16 24 24 H 1.08997 * 109.46921 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46894 * 300.00042 * 1 2 3 26 26 H 1.08995 * 109.47337 * 59.99884 * 1 2 3 27 27 H 1.07997 * 120.03265 * 359.97265 * 6 5 4 28 28 H 1.08003 * 119.96857 * 179.97438 * 7 6 5 29 29 H 1.07994 * 119.94077 * 180.02562 * 8 7 6 30 30 H 1.08995 * 109.47185 * 210.00513 * 10 9 8 31 31 H 1.09002 * 109.46867 * 330.00968 * 10 9 8 32 32 H 0.96694 * 113.99543 * 180.02562 * 11 10 9 33 33 H 1.08002 * 120.03095 * 180.29084 * 12 9 8 34 34 H 0.96996 * 119.99993 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.1105 0.0622 -2.3047 6 6 1.6558 1.3728 -2.3288 7 6 1.7634 2.1187 -3.4863 8 6 2.3241 1.5604 -4.6204 9 6 2.7778 0.2547 -4.5991 10 6 3.3878 -0.3507 -5.8369 11 8 4.7970 -0.1133 -5.8383 12 6 2.6777 -0.4937 -3.4420 13 6 2.0324 -0.7105 1.2304 14 8 2.7250 -1.6988 1.1191 15 8 1.7079 -0.2517 2.4503 16 6 2.1908 -0.9337 3.5096 17 1 2.8085 -1.8059 3.3543 18 6 1.8946 -0.5138 4.7985 19 7 1.1441 0.5486 4.9875 20 14 2.5637 -1.4576 6.2651 21 1 4.0480 -1.4560 6.2195 22 1 2.1069 -0.8098 7.5209 23 1 2.0686 -2.8569 6.2210 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.2181 1.8094 -1.4433 28 1 1.4091 3.1388 -3.5057 29 1 2.4077 2.1454 -5.5243 30 1 3.2003 -1.4244 -5.8465 31 1 2.9418 0.1040 -6.7214 32 1 5.2561 -0.4759 -6.6082 33 1 3.0365 -1.5122 -3.4243 34 1 0.9373 0.8423 5.8886 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753412665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:56 Heat of formation + Delta-G solvation = -163.123591 kcal Electronic energy + Delta-G solvation = -19481.394897 eV Core-core repulsion = 16151.377369 eV Total energy + Delta-G solvation = -3330.017527 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.76529 -40.80824 -39.08212 -37.42085 -37.06666 -34.43586 -33.32709 -32.50744 -30.79005 -27.82433 -26.97886 -25.75952 -23.53002 -23.07025 -21.28548 -19.99012 -19.28584 -18.46454 -18.33561 -17.47446 -17.04640 -16.95495 -16.38599 -16.18538 -15.99668 -15.67255 -15.02044 -14.54405 -14.48007 -14.33694 -13.80200 -13.66332 -13.38640 -13.20836 -13.14165 -12.68880 -12.48603 -12.43471 -12.18324 -12.14369 -12.08566 -11.73433 -11.05436 -10.97048 -10.74833 -9.95518 -9.25300 -8.59814 -6.40816 0.21364 0.41478 1.20200 1.28596 1.44207 1.54127 1.60916 2.21192 2.66291 2.79280 2.90856 3.55684 3.61327 3.81524 3.86166 4.02097 4.07679 4.20130 4.34829 4.40515 4.42361 4.54562 4.63936 4.69225 4.78591 5.01628 5.05804 5.10041 5.29781 5.42164 5.54564 5.74192 5.76890 6.31432 6.52280 6.84223 6.93344 7.61423 8.59832 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.038544 B = 0.003766 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.263228 B = 7434.083542 C = 7845.324728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.115 3.885 3 H 0.119 0.881 4 O -0.315 6.315 5 C 0.103 3.897 6 C -0.212 4.212 7 C -0.078 4.078 8 C -0.138 4.138 9 C -0.066 4.066 10 C 0.119 3.881 11 O -0.591 6.591 12 C -0.152 4.152 13 C 0.394 3.606 14 O -0.573 6.573 15 O -0.226 6.226 16 C -0.429 4.429 17 H 0.080 0.920 18 C 0.003 3.997 19 N -0.895 5.895 20 Si 1.018 2.982 21 H -0.263 1.263 22 H -0.255 1.255 23 H -0.262 1.262 24 H 0.061 0.939 25 H 0.087 0.913 26 H 0.104 0.896 27 H 0.143 0.857 28 H 0.160 0.840 29 H 0.154 0.846 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.401 0.599 33 H 0.122 0.878 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.743 4.040 -19.912 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.057 3.943 3 H 0.136 0.864 4 O -0.230 6.230 5 C 0.058 3.942 6 C -0.231 4.231 7 C -0.096 4.096 8 C -0.156 4.156 9 C -0.066 4.066 10 C 0.041 3.959 11 O -0.400 6.400 12 C -0.171 4.171 13 C 0.241 3.759 14 O -0.470 6.470 15 O -0.134 6.134 16 C -0.504 4.504 17 H 0.098 0.902 18 C -0.198 4.198 19 N -0.531 5.531 20 Si 0.836 3.164 21 H -0.187 1.187 22 H -0.179 1.179 23 H -0.186 1.186 24 H 0.080 0.920 25 H 0.105 0.895 26 H 0.123 0.877 27 H 0.160 0.840 28 H 0.178 0.822 29 H 0.172 0.828 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.252 0.748 33 H 0.140 0.860 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.774 4.015 -19.171 19.602 hybrid contribution 0.450 -0.847 0.482 1.073 sum -0.324 3.168 -18.689 18.958 Atomic orbital electron populations 1.22235 0.90025 1.04039 1.05307 1.21503 0.97106 0.95759 0.79884 0.86391 1.86118 1.81857 1.38490 1.16517 1.19364 0.97079 0.91669 0.86063 1.21631 1.06331 0.93446 1.01673 1.21337 0.96420 1.00631 0.91176 1.21333 1.00051 0.94220 0.99992 1.19764 0.97884 0.94727 0.94251 1.21052 0.81273 0.99355 0.94172 1.86530 1.20088 1.82354 1.51060 1.20473 1.03463 1.01744 0.91442 1.23776 0.80878 0.84762 0.86507 1.90546 1.40026 1.28691 1.87744 1.83852 1.64236 1.52269 1.13014 1.21427 1.33912 1.12072 0.82997 0.90224 1.26520 0.95803 0.97310 1.00178 1.70040 1.34870 1.23778 1.24446 0.84689 0.78820 0.77929 0.74940 1.18727 1.17891 1.18623 0.92025 0.89463 0.87712 0.83972 0.82209 0.82820 0.91803 0.89496 0.74836 0.86045 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.22 9.10 71.98 0.66 -4.57 16 2 C 0.11 4.60 2.75 29.85 0.08 4.68 16 3 H 0.12 4.18 6.32 -2.39 -0.02 4.16 16 4 O -0.32 -12.82 9.33 -73.38 -0.68 -13.51 16 5 C 0.10 3.39 6.60 22.50 0.15 3.54 16 6 C -0.21 -5.62 8.24 22.37 0.18 -5.43 16 7 C -0.08 -1.59 10.04 22.25 0.22 -1.37 16 8 C -0.14 -2.73 9.70 22.28 0.22 -2.51 16 9 C -0.07 -1.54 5.51 -19.88 -0.11 -1.65 16 10 C 0.12 1.94 7.17 71.24 0.51 2.45 16 11 O -0.59 -10.94 13.64 -148.98 -2.03 -12.97 16 12 C -0.15 -4.57 9.64 22.37 0.22 -4.35 16 13 C 0.39 21.17 7.28 71.23 0.52 21.68 16 14 O -0.57 -34.60 15.74 27.22 0.43 -34.17 16 15 O -0.23 -13.43 9.65 14.88 0.14 -13.29 16 16 C -0.43 -26.45 9.65 67.94 0.66 -25.79 16 17 H 0.08 5.04 6.86 -2.91 -0.02 5.02 16 18 C 0.00 0.18 5.49 84.88 0.47 0.65 16 19 N -0.89 -52.02 13.67 21.63 0.30 -51.72 16 20 Si 1.02 43.42 29.55 68.60 2.03 45.45 16 21 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 22 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 24 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.09 2.95 8.11 -2.38 -0.02 2.93 16 26 H 0.10 2.63 6.90 -2.39 -0.02 2.61 16 27 H 0.14 3.42 5.43 -2.91 -0.02 3.41 16 28 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 29 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 30 H 0.06 0.93 8.09 -2.39 -0.02 0.91 16 31 H 0.09 0.89 8.08 -2.39 -0.02 0.87 16 32 H 0.40 3.03 9.12 -74.06 -0.68 2.35 16 33 H 0.12 3.70 8.06 -2.91 -0.02 3.68 16 34 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -80.51 303.59 4.40 -76.11 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.46 Total: 16.77 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 3.77 Total: -12.67 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.30 Total: -51.72 kcal Atomic # 8 Polarization: -71.79 SS G_CDS: -2.15 Total: -73.94 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -80.51 4.40 -76.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753412665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.017 kcal (2) G-P(sol) polarization free energy of solvation -80.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds