Wall clock time and date at job start Mon Mar 30 2020 05:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.52996 * 115.56288 * 346.21952 * 3 2 1 5 5 C 1.50700 * 109.47221 * 325.68598 * 4 3 2 6 6 O 1.20829 * 119.99958 * 0.02562 * 5 4 3 7 7 O 1.34227 * 120.00290 * 180.02562 * 5 4 3 8 8 C 1.45204 * 117.00259 * 180.02562 * 7 5 4 9 9 C 1.50695 * 109.46841 * 179.97438 * 8 7 5 10 10 O 1.21282 * 120.00563 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99480 * 179.97438 * 9 8 7 12 12 C 1.46505 * 119.99962 * 179.97438 * 11 9 8 13 13 C 1.50690 * 109.47392 * 179.97438 * 12 11 9 14 14 H 1.08003 * 119.99922 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00223 * 180.02562 * 13 12 11 16 16 N 1.31523 * 120.00002 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99907 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.46875 * 90.00107 * 17 15 13 19 19 H 1.48497 * 109.47209 * 210.00035 * 17 15 13 20 20 H 1.48496 * 109.47232 * 329.99999 * 17 15 13 21 21 C 1.53000 * 117.49510 * 131.90694 * 3 2 1 22 22 C 1.53002 * 60.02940 * 107.47689 * 21 3 2 23 23 H 1.08996 * 109.47632 * 85.68980 * 4 3 2 24 24 H 1.08998 * 109.46891 * 205.69101 * 4 3 2 25 25 H 1.09003 * 109.46525 * 299.99344 * 8 7 5 26 26 H 1.09002 * 109.47196 * 59.99552 * 8 7 5 27 27 H 0.96997 * 120.00061 * 359.97438 * 11 9 8 28 28 H 1.09002 * 109.47150 * 300.00510 * 12 11 9 29 29 H 1.08997 * 109.46743 * 59.99816 * 12 11 9 30 30 H 0.96994 * 119.99562 * 179.97438 * 16 15 13 31 31 H 1.09002 * 117.49833 * 214.97794 * 21 3 2 32 32 H 1.09002 * 117.49953 * 359.97438 * 21 3 2 33 33 H 1.09000 * 117.49996 * 107.50493 * 22 21 3 34 34 H 1.08999 * 117.49664 * 252.51862 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2688 -1.3395 0.3288 5 6 2.4273 -2.0810 1.3352 6 8 1.4037 -1.5884 1.7470 7 8 2.8147 -3.2888 1.7743 8 6 1.9548 -3.9452 2.7429 9 6 2.5461 -5.2801 3.1162 10 8 3.5892 -5.6429 2.6149 11 7 1.9157 -6.0709 4.0071 12 6 2.4902 -7.3689 4.3697 13 6 1.5985 -8.0495 5.3759 14 1 0.6940 -7.5640 5.7115 15 6 1.9373 -9.2921 5.8681 16 7 1.1588 -9.8863 6.7460 17 14 3.5020 -10.1316 5.2882 18 1 4.6283 -9.7473 6.1764 19 1 3.3184 -11.6046 5.3307 20 1 3.8031 -9.7103 3.8964 21 6 3.3140 0.9075 -1.0101 22 6 3.3141 1.2728 0.4757 23 1 3.3562 -1.9343 -0.5804 24 1 4.2609 -1.1631 0.7443 25 1 1.8701 -3.3230 3.6339 26 1 0.9663 -4.0947 2.3087 27 1 1.0816 -5.7806 4.4083 28 1 2.5739 -7.9909 3.4784 29 1 3.4792 -7.2202 4.8030 30 1 1.3969 -10.7606 7.0919 31 1 4.2493 0.5493 -1.4403 32 1 2.6884 1.5032 -1.6748 33 1 4.2494 1.1550 1.0229 34 1 2.6883 2.1086 0.7885 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815412421.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:54 Heat of formation + Delta-G solvation = -64.600410 kcal Electronic energy + Delta-G solvation = -18878.076095 eV Core-core repulsion = 15584.623604 eV Total energy + Delta-G solvation = -3293.452491 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.94820 -39.23865 -38.53388 -36.44739 -35.67491 -34.40992 -32.45978 -30.92534 -29.27155 -27.09594 -24.00594 -23.10685 -22.30196 -21.35936 -20.16817 -18.34509 -17.70334 -17.33291 -16.91309 -16.30577 -15.63727 -15.52204 -15.08525 -14.99270 -14.21453 -14.16461 -13.81988 -13.41691 -13.15216 -12.96400 -12.72001 -12.60499 -12.40231 -12.17216 -12.11440 -12.02837 -11.26950 -11.09358 -10.88933 -10.78545 -10.77029 -10.43217 -10.02311 -9.56787 -9.39139 -8.84020 -8.30510 -6.25999 -4.29318 1.93873 2.14654 2.37745 2.65289 2.98249 3.23617 3.30497 3.38055 3.40415 3.53486 3.74027 3.93792 4.24512 4.28813 4.30907 4.72294 4.89497 4.97803 5.01723 5.05469 5.08286 5.13108 5.17843 5.18596 5.30295 5.48491 6.18611 6.69839 6.97965 7.05530 7.29078 7.46513 7.53453 8.01725 8.38423 8.64650 8.76770 9.32784 10.85803 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.048862 B = 0.003074 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.904960 B = 9106.940426 C = 9502.805238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.245 3.755 3 C -0.045 4.045 4 C -0.070 4.070 5 C 0.457 3.543 6 O -0.499 6.499 7 O -0.327 6.327 8 C 0.050 3.950 9 C 0.502 3.498 10 O -0.537 6.537 11 N -0.699 5.699 12 C 0.222 3.778 13 C -0.547 4.547 14 H 0.081 0.919 15 C 0.078 3.922 16 N -0.890 5.890 17 Si 0.878 3.122 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.260 1.260 21 C -0.139 4.139 22 C -0.144 4.144 23 H 0.123 0.877 24 H 0.128 0.872 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.399 0.601 28 H 0.028 0.972 29 H 0.024 0.976 30 H 0.268 0.732 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.128 21.075 -13.872 26.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.072 4.072 3 C -0.048 4.048 4 C -0.108 4.108 5 C 0.299 3.701 6 O -0.386 6.386 7 O -0.242 6.242 8 C -0.028 4.028 9 C 0.285 3.715 10 O -0.414 6.414 11 N -0.349 5.349 12 C 0.101 3.899 13 C -0.585 4.585 14 H 0.099 0.901 15 C -0.126 4.126 16 N -0.527 5.527 17 Si 0.704 3.296 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.185 1.185 21 C -0.178 4.178 22 C -0.182 4.182 23 H 0.141 0.859 24 H 0.146 0.854 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.233 0.767 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.137 0.863 32 H 0.126 0.874 33 H 0.135 0.865 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.804 20.707 -13.944 25.630 hybrid contribution 0.484 -0.533 0.286 0.775 sum 6.288 20.174 -13.658 25.160 Atomic orbital electron populations 1.81181 1.12118 1.07161 1.09116 1.27119 0.92936 0.94102 0.93030 1.17974 0.83177 0.93499 1.10172 1.20899 0.99098 0.92067 0.98766 1.23594 0.85079 0.80064 0.81362 1.90727 1.24947 1.67183 1.55749 1.86532 1.50892 1.31131 1.55599 1.22841 0.93926 0.93305 0.92693 1.19907 0.85559 0.85238 0.80746 1.90698 1.22985 1.74220 1.53543 1.46080 1.26418 1.20241 1.42207 1.19558 0.94836 0.79361 0.96167 1.21064 1.09522 1.03484 1.24394 0.90139 1.24797 0.96969 0.96643 0.94186 1.69880 1.37621 1.15868 1.29374 0.86805 0.83457 0.78926 0.80445 1.19771 1.20830 1.18459 1.23261 1.02074 0.99633 0.92790 1.23347 1.02007 0.95507 0.97347 0.85879 0.85363 0.88206 0.88330 0.76681 0.95406 0.95843 0.92163 0.86304 0.87413 0.86457 0.87549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.23 18.36 42.15 0.77 -5.46 16 2 C 0.25 2.82 12.05 -20.76 -0.25 2.57 16 3 C -0.04 -0.29 2.26 -157.26 -0.36 -0.65 16 4 C -0.07 -0.44 5.99 -27.88 -0.17 -0.61 16 5 C 0.46 5.30 7.78 36.01 0.28 5.58 16 6 O -0.50 -7.21 13.31 -18.75 -0.25 -7.46 16 7 O -0.33 -4.56 9.75 -45.89 -0.45 -5.01 16 8 C 0.05 0.71 5.94 36.00 0.21 0.93 16 9 C 0.50 9.38 7.91 -10.99 -0.09 9.30 16 10 O -0.54 -12.04 16.50 -14.10 -0.23 -12.27 16 11 N -0.70 -13.77 5.55 -61.47 -0.34 -14.11 16 12 C 0.22 5.35 4.50 -5.20 -0.02 5.32 16 13 C -0.55 -14.77 9.83 -34.44 -0.34 -15.11 16 14 H 0.08 2.26 7.84 -52.48 -0.41 1.85 16 15 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 16 N -0.89 -26.20 13.96 55.43 0.77 -25.43 16 17 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 21 C -0.14 -0.43 9.93 -26.73 -0.27 -0.69 16 22 C -0.14 -0.57 9.86 -26.69 -0.26 -0.83 16 23 H 0.12 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.13 0.44 7.90 -51.93 -0.41 0.03 16 25 H 0.10 1.25 8.13 -51.93 -0.42 0.82 16 26 H 0.10 1.29 8.13 -51.93 -0.42 0.86 16 27 H 0.40 6.84 8.32 -40.82 -0.34 6.50 16 28 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 29 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 30 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.12 0.10 8.14 -51.93 -0.42 -0.33 16 32 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.12 0.24 8.05 -51.93 -0.42 -0.18 16 34 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 311.20 15.07 4.69 4.69 Total: -1.00 -36.57 311.20 -5.11 -41.67 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -4.05 Total: -0.91 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -1.35 Total: 7.89 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 1.21 Total: -45.00 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.93 Total: -24.74 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -36.57 -5.11 -41.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815412421.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.929 kcal (2) G-P(sol) polarization free energy of solvation -36.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds