Wall clock time and date at job start Mon Mar 30 2020 05:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.52996 * 115.56288 * 346.21952 * 3 2 1 5 5 C 1.50700 * 109.47221 * 325.68598 * 4 3 2 6 6 O 1.20829 * 119.99958 * 0.02562 * 5 4 3 7 7 O 1.34227 * 120.00290 * 180.02562 * 5 4 3 8 8 C 1.45204 * 117.00259 * 180.02562 * 7 5 4 9 9 C 1.50695 * 109.46841 * 179.97438 * 8 7 5 10 10 O 1.21282 * 120.00563 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99480 * 179.97438 * 9 8 7 12 12 C 1.46505 * 119.99962 * 179.97438 * 11 9 8 13 13 C 1.50690 * 109.47392 * 179.97438 * 12 11 9 14 14 H 1.08003 * 119.99922 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00223 * 180.02562 * 13 12 11 16 16 N 1.31523 * 120.00002 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99907 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.46875 * 90.00107 * 17 15 13 19 19 H 1.48497 * 109.47209 * 210.00035 * 17 15 13 20 20 H 1.48496 * 109.47232 * 329.99999 * 17 15 13 21 21 C 1.53000 * 117.49510 * 131.90694 * 3 2 1 22 22 C 1.53002 * 60.02940 * 107.47689 * 21 3 2 23 23 H 1.08996 * 109.47632 * 85.68980 * 4 3 2 24 24 H 1.08998 * 109.46891 * 205.69101 * 4 3 2 25 25 H 1.09003 * 109.46525 * 299.99344 * 8 7 5 26 26 H 1.09002 * 109.47196 * 59.99552 * 8 7 5 27 27 H 0.96997 * 120.00061 * 359.97438 * 11 9 8 28 28 H 1.09002 * 109.47150 * 300.00510 * 12 11 9 29 29 H 1.08997 * 109.46743 * 59.99816 * 12 11 9 30 30 H 0.96994 * 119.99562 * 179.97438 * 16 15 13 31 31 H 1.09002 * 117.49833 * 214.97794 * 21 3 2 32 32 H 1.09002 * 117.49953 * 359.97438 * 21 3 2 33 33 H 1.09000 * 117.49996 * 107.50493 * 22 21 3 34 34 H 1.08999 * 117.49664 * 252.51862 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2688 -1.3395 0.3288 5 6 2.4273 -2.0810 1.3352 6 8 1.4037 -1.5884 1.7470 7 8 2.8147 -3.2888 1.7743 8 6 1.9548 -3.9452 2.7429 9 6 2.5461 -5.2801 3.1162 10 8 3.5892 -5.6429 2.6149 11 7 1.9157 -6.0709 4.0071 12 6 2.4902 -7.3689 4.3697 13 6 1.5985 -8.0495 5.3759 14 1 0.6940 -7.5640 5.7115 15 6 1.9373 -9.2921 5.8681 16 7 1.1588 -9.8863 6.7460 17 14 3.5020 -10.1316 5.2882 18 1 4.6283 -9.7473 6.1764 19 1 3.3184 -11.6046 5.3307 20 1 3.8031 -9.7103 3.8964 21 6 3.3140 0.9075 -1.0101 22 6 3.3141 1.2728 0.4757 23 1 3.3562 -1.9343 -0.5804 24 1 4.2609 -1.1631 0.7443 25 1 1.8701 -3.3230 3.6339 26 1 0.9663 -4.0947 2.3087 27 1 1.0816 -5.7806 4.4083 28 1 2.5739 -7.9909 3.4784 29 1 3.4792 -7.2202 4.8030 30 1 1.3969 -10.7606 7.0919 31 1 4.2493 0.5493 -1.4403 32 1 2.6884 1.5032 -1.6748 33 1 4.2494 1.1550 1.0229 34 1 2.6883 2.1086 0.7885 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815412421.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:53 Heat of formation + Delta-G solvation = -90.808049 kcal Electronic energy + Delta-G solvation = -18879.212543 eV Core-core repulsion = 15584.623604 eV Total energy + Delta-G solvation = -3294.588939 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.88619 -40.55287 -39.32311 -37.45999 -36.53475 -36.21286 -34.47591 -31.74376 -30.65103 -28.64788 -24.74826 -24.05038 -23.32804 -22.32101 -21.73850 -19.50961 -18.90819 -18.48924 -17.98456 -17.70359 -17.02253 -16.59312 -16.36604 -15.88631 -15.78436 -15.06058 -14.88184 -14.63733 -14.49215 -14.26014 -13.94322 -13.79774 -13.61091 -13.31331 -13.09016 -12.84806 -12.70443 -12.26621 -11.94041 -11.93012 -11.82290 -11.68751 -11.42903 -11.00509 -10.93225 -10.91848 -10.05935 -8.40918 -6.49181 1.08100 1.20382 1.34181 1.36960 1.47714 1.49923 1.70201 1.87126 2.28008 2.44998 2.86735 2.94419 3.05659 3.47436 3.55332 3.65336 3.92393 3.99561 4.01160 4.20423 4.58982 4.63550 4.73162 4.82457 4.88072 4.99515 5.11064 5.21245 5.28580 5.31092 5.38212 6.04021 6.49938 6.56189 6.69921 6.72947 7.09384 7.24493 8.73811 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.048862 B = 0.003074 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.904960 B = 9106.940426 C = 9502.805238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C 0.265 3.735 3 C -0.077 4.077 4 C -0.060 4.060 5 C 0.453 3.547 6 O -0.533 6.533 7 O -0.340 6.340 8 C 0.059 3.941 9 C 0.506 3.494 10 O -0.573 6.573 11 N -0.699 5.699 12 C 0.233 3.767 13 C -0.550 4.550 14 H 0.058 0.942 15 C 0.025 3.975 16 N -0.932 5.932 17 Si 0.940 3.060 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.257 1.257 21 C -0.110 4.110 22 C -0.136 4.136 23 H 0.146 0.854 24 H 0.167 0.833 25 H 0.120 0.880 26 H 0.111 0.889 27 H 0.411 0.589 28 H 0.018 0.982 29 H 0.019 0.981 30 H 0.273 0.727 31 H 0.153 0.847 32 H 0.106 0.894 33 H 0.144 0.856 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.764 22.355 -15.305 28.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.176 5.176 2 C -0.050 4.050 3 C -0.081 4.081 4 C -0.098 4.098 5 C 0.298 3.702 6 O -0.422 6.422 7 O -0.256 6.256 8 C -0.018 4.018 9 C 0.292 3.708 10 O -0.453 6.453 11 N -0.350 5.350 12 C 0.110 3.890 13 C -0.588 4.588 14 H 0.076 0.924 15 C -0.176 4.176 16 N -0.571 5.571 17 Si 0.764 3.236 18 H -0.188 1.188 19 H -0.200 1.200 20 H -0.181 1.181 21 C -0.148 4.148 22 C -0.175 4.175 23 H 0.163 0.837 24 H 0.185 0.815 25 H 0.138 0.862 26 H 0.129 0.871 27 H 0.247 0.753 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.171 0.829 32 H 0.124 0.876 33 H 0.162 0.838 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.425 22.023 -15.385 28.155 hybrid contribution -0.369 -0.833 0.725 1.164 sum 8.056 21.190 -14.660 26.997 Atomic orbital electron populations 1.81173 1.14651 1.09679 1.12050 1.28167 0.94229 0.91887 0.90755 1.18379 0.80344 0.95008 1.14358 1.21182 0.99403 0.91165 0.98031 1.24740 0.85161 0.79000 0.81325 1.90730 1.26686 1.67644 1.57163 1.86544 1.51045 1.32412 1.55566 1.22636 0.93885 0.91127 0.94134 1.20514 0.84728 0.86230 0.79330 1.90672 1.24677 1.75328 1.54660 1.45901 1.27027 1.19238 1.42883 1.19178 0.94084 0.81021 0.94758 1.21279 1.09164 1.03678 1.24702 0.92358 1.25646 1.00164 0.97477 0.94274 1.69991 1.39623 1.16600 1.30846 0.85812 0.79633 0.78106 0.80098 1.18762 1.19983 1.18086 1.23475 1.02305 0.96832 0.92192 1.23545 1.02150 0.93194 0.98571 0.83668 0.81509 0.86180 0.87068 0.75281 0.96392 0.96309 0.91798 0.82875 0.87587 0.83777 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -15.31 18.36 20.01 0.37 -14.94 16 2 C 0.27 5.98 12.05 89.44 1.08 7.06 16 3 C -0.08 -0.80 2.26 -53.96 -0.12 -0.92 16 4 C -0.06 -0.54 5.99 29.85 0.18 -0.36 16 5 C 0.45 9.62 7.78 71.24 0.55 10.18 16 6 O -0.53 -15.02 13.31 21.96 0.29 -14.73 16 7 O -0.34 -8.86 9.75 -45.03 -0.44 -9.30 16 8 C 0.06 1.61 5.94 71.23 0.42 2.04 16 9 C 0.51 18.44 7.91 87.65 0.69 19.13 16 10 O -0.57 -25.22 16.50 15.76 0.26 -24.96 16 11 N -0.70 -27.21 5.55 -466.79 -2.59 -29.80 16 12 C 0.23 11.13 4.50 85.63 0.38 11.51 16 13 C -0.55 -30.02 9.83 25.60 0.25 -29.76 16 14 H 0.06 3.36 7.84 -2.91 -0.02 3.33 16 15 C 0.02 1.38 5.47 84.65 0.46 1.85 16 16 N -0.93 -55.44 13.96 21.45 0.30 -55.14 16 17 Si 0.94 43.19 27.47 68.60 1.88 45.07 16 18 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.26 -11.57 6.54 99.48 0.65 -10.91 16 21 C -0.11 -0.22 9.93 30.60 0.30 0.09 16 22 C -0.14 -0.59 9.86 30.62 0.30 -0.28 16 23 H 0.15 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.17 0.24 7.90 -2.39 -0.02 0.22 16 25 H 0.12 2.80 8.13 -2.39 -0.02 2.78 16 26 H 0.11 2.77 8.13 -2.39 -0.02 2.75 16 27 H 0.41 13.96 8.32 -92.71 -0.77 13.19 16 28 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 29 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 30 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 31 H 0.15 -0.68 8.14 -2.39 -0.02 -0.70 16 32 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.14 -0.13 8.05 -2.39 -0.02 -0.15 16 34 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -82.34 311.20 4.89 -77.44 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: 0.31 Total: 5.83 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: 4.51 Total: 20.52 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -1.92 Total: -99.88 kcal Atomic # 8 Polarization: -49.10 SS G_CDS: 0.11 Total: -48.99 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.88 Total: 45.07 kcal Total: -82.34 4.89 -77.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815412421.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.365 kcal (2) G-P(sol) polarization free energy of solvation -82.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds