Wall clock time and date at job start Mon Mar 30 2020 04:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34753 * 117.00368 * 2 1 4 4 O 1.21507 * 119.99615 * 359.97438 * 3 2 1 5 5 C 1.47467 * 120.00304 * 179.97438 * 3 2 1 6 6 C 1.39817 * 120.08784 * 0.02562 * 5 3 2 7 7 C 1.37665 * 119.90166 * 179.97438 * 6 5 3 8 8 C 1.39030 * 120.09483 * 0.28148 * 7 6 5 9 9 O 1.35700 * 119.90992 * 179.71887 * 8 7 6 10 10 C 1.42897 * 116.99450 * 0.02562 * 9 8 7 11 11 C 1.38998 * 120.18591 * 359.44047 * 8 7 6 12 12 C 1.50697 * 119.95472 * 180.27891 * 11 8 7 13 13 H 1.08998 * 109.47042 * 325.27538 * 12 11 8 14 14 O 1.42898 * 109.47234 * 205.27506 * 12 11 8 15 15 C 1.50699 * 109.47157 * 85.27578 * 12 11 8 16 16 H 1.08003 * 119.99576 * 0.02562 * 15 12 11 17 17 C 1.37876 * 119.99994 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99997 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99973 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47197 * 89.99910 * 19 17 15 21 21 H 1.48499 * 109.46889 * 210.00296 * 19 17 15 22 22 H 1.48506 * 109.46833 * 330.00122 * 19 17 15 23 23 C 1.37702 * 120.09091 * 0.55871 * 11 8 7 24 24 H 1.09006 * 109.47030 * 300.00568 * 1 2 3 25 25 H 1.09005 * 109.46813 * 59.99734 * 1 2 3 26 26 H 1.08999 * 109.47369 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.05037 * 359.95441 * 6 5 3 28 28 H 1.08002 * 119.94957 * 179.97438 * 7 6 5 29 29 H 1.09006 * 109.46605 * 179.97438 * 10 9 8 30 30 H 1.09002 * 109.47606 * 299.99535 * 10 9 8 31 31 H 1.09002 * 109.47251 * 60.00431 * 10 9 8 32 32 H 0.96705 * 114.00555 * 300.00158 * 14 12 11 33 33 H 0.96999 * 119.99967 * 179.97438 * 18 17 15 34 34 H 1.08000 * 120.04746 * 179.74875 * 23 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2197 -0.0005 5 6 3.5365 1.2778 0.0006 6 6 4.2998 0.1063 0.0006 7 6 5.6743 0.1828 0.0006 8 6 6.3035 1.4226 0.0065 9 8 7.6586 1.4936 0.0122 10 6 8.3730 0.2560 0.0113 11 6 5.5484 2.5896 0.0007 12 6 6.2359 3.9306 0.0008 13 1 7.1507 3.8699 0.5903 14 8 5.3666 4.9115 0.5701 15 6 6.5754 4.3212 -1.4146 16 1 6.3185 3.6642 -2.2324 17 6 7.2129 5.5177 -1.6655 18 7 7.5251 6.3179 -0.6696 19 14 7.6330 6.0022 -3.4200 20 1 6.5030 6.7664 -4.0066 21 1 8.8550 6.8460 -3.4214 22 1 7.8751 4.7791 -4.2268 23 6 4.1731 2.5221 0.0007 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.8118 -0.8571 0.0009 28 1 6.2646 -0.7215 0.0010 29 1 9.4447 0.4552 0.0158 30 1 8.1061 -0.3184 0.8984 31 1 8.1133 -0.3127 -0.8816 32 1 4.5309 5.0194 0.0957 33 1 7.9740 7.1595 -0.8462 34 1 3.5871 3.4293 0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535731337.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:43 Heat of formation + Delta-G solvation = -144.277459 kcal Electronic energy + Delta-G solvation = -20127.471647 eV Core-core repulsion = 16798.271349 eV Total energy + Delta-G solvation = -3329.200298 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.41143 -39.58640 -37.20755 -36.16377 -35.44777 -32.14061 -31.05157 -30.25149 -27.91142 -27.08450 -26.47996 -23.43372 -23.20441 -20.94757 -20.26215 -17.86678 -17.39505 -16.97036 -16.78851 -16.19961 -15.69817 -15.36441 -14.72541 -14.56368 -14.08780 -13.77010 -13.57243 -13.33503 -12.95218 -12.73602 -12.25196 -12.13848 -12.08184 -11.55789 -11.23770 -10.95834 -10.89678 -10.80734 -10.72333 -10.68775 -10.33369 -10.16569 -9.27346 -8.71638 -8.45846 -8.30835 -7.67901 -5.98874 -4.16915 1.11623 1.75968 2.84270 2.85380 3.30175 3.36746 3.40119 3.63164 4.15770 4.43717 4.92828 5.04593 5.08266 5.11744 5.15383 5.27894 5.29896 5.34235 5.46482 5.55391 5.66054 5.79939 6.02083 6.25035 6.33396 6.38603 6.53797 6.62292 6.78638 7.09920 7.67539 7.79439 7.85268 7.95832 8.13541 8.83438 9.32408 9.57225 11.04794 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.018299 B = 0.006228 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.742607 B = 4494.638360 C = 5391.110891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.360 6.360 3 C 0.514 3.486 4 O -0.511 6.511 5 C -0.175 4.175 6 C -0.043 4.043 7 C -0.230 4.230 8 C 0.170 3.830 9 O -0.289 6.289 10 C 0.025 3.975 11 C -0.114 4.114 12 C 0.268 3.732 13 H 0.077 0.923 14 O -0.560 6.560 15 C -0.557 4.557 16 H 0.056 0.944 17 C 0.081 3.919 18 N -0.859 5.859 19 Si 0.891 3.109 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.018 4.018 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.098 0.902 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.347 0.653 33 H 0.261 0.739 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.880 -15.082 1.398 16.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.278 6.278 3 C 0.361 3.639 4 O -0.401 6.401 5 C -0.176 4.176 6 C -0.061 4.061 7 C -0.249 4.249 8 C 0.123 3.877 9 O -0.200 6.200 10 C -0.071 4.071 11 C -0.115 4.115 12 C 0.211 3.789 13 H 0.095 0.905 14 O -0.364 6.364 15 C -0.594 4.594 16 H 0.074 0.926 17 C -0.126 4.126 18 N -0.495 5.495 19 Si 0.719 3.281 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.036 4.036 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.116 0.884 27 H 0.149 0.851 28 H 0.148 0.852 29 H 0.117 0.883 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.192 0.808 33 H 0.071 0.929 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.379 -14.398 1.895 15.486 hybrid contribution -0.373 -0.146 -1.471 1.525 sum -5.752 -14.544 0.423 15.646 Atomic orbital electron populations 1.23209 0.76660 1.03269 1.02539 1.86546 1.23048 1.33284 1.84881 1.21248 0.89248 0.81079 0.72366 1.90826 1.66838 1.35929 1.46490 1.18856 0.88281 0.95043 1.15413 1.20968 0.92889 0.97391 0.94842 1.21110 0.95443 0.96526 1.11813 1.19220 0.82843 0.93278 0.92377 1.86261 1.15284 1.31450 1.87013 1.23073 0.97253 0.85943 1.00809 1.20852 0.92597 0.97644 1.00391 1.18363 0.88174 0.77751 0.94639 0.90539 1.86630 1.31222 1.61934 1.56573 1.21444 1.41071 1.04898 0.92020 0.92602 1.25011 0.94416 0.96219 0.96906 1.70071 1.38396 1.10434 1.30560 0.86630 0.77997 0.78544 0.84979 1.20482 1.21073 1.19849 1.20832 0.93364 0.96413 0.92976 0.92003 0.91985 0.88364 0.85081 0.85232 0.88323 0.92993 0.92833 0.80829 0.92897 0.84126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.57 101.05 1.07 1.44 16 2 O -0.36 -4.99 9.81 -40.64 -0.40 -5.39 16 3 C 0.51 8.68 7.89 34.49 0.27 8.96 16 4 O -0.51 -9.80 16.13 -19.27 -0.31 -10.12 16 5 C -0.17 -3.05 5.87 -104.98 -0.62 -3.67 16 6 C -0.04 -0.64 9.61 -39.20 -0.38 -1.02 16 7 C -0.23 -3.53 9.01 -39.50 -0.36 -3.89 16 8 C 0.17 3.25 6.67 -39.01 -0.26 2.99 16 9 O -0.29 -5.44 9.60 -18.80 -0.18 -5.62 16 10 C 0.02 0.31 9.81 101.05 0.99 1.30 16 11 C -0.11 -2.47 5.01 -104.54 -0.52 -3.00 16 12 C 0.27 6.93 2.79 -29.04 -0.08 6.85 16 13 H 0.08 2.17 7.67 -51.93 -0.40 1.78 16 14 O -0.56 -14.67 12.38 -35.23 -0.44 -15.10 16 15 C -0.56 -15.40 8.75 -34.44 -0.30 -15.70 16 16 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 17 C 0.08 2.26 5.40 -17.82 -0.10 2.17 16 18 N -0.86 -25.38 12.84 55.43 0.71 -24.66 16 19 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.02 -0.35 8.84 -39.21 -0.35 -0.70 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.13 1.60 7.60 -52.49 -0.40 1.20 16 28 H 0.13 1.54 6.28 -52.49 -0.33 1.21 16 29 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 31 H 0.05 0.59 7.65 -51.93 -0.40 0.19 16 32 H 0.35 8.10 7.31 45.56 0.33 8.43 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.14 2.82 5.98 -52.49 -0.31 2.50 16 LS Contribution 300.58 15.07 4.53 4.53 Total: -1.00 -33.25 300.58 -4.87 -38.12 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -3.13 Total: 6.17 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -0.63 Total: -4.27 kcal Atomic # 7 Polarization: -25.38 SS G_CDS: 0.71 Total: -24.66 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -1.33 Total: -36.23 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.25 -4.87 -38.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535731337.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.157 kcal (2) G-P(sol) polarization free energy of solvation -33.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds