Wall clock time and date at job start Mon Mar 30 2020 04:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34753 * 117.00368 * 2 1 4 4 O 1.21507 * 119.99615 * 359.97438 * 3 2 1 5 5 C 1.47467 * 120.00304 * 179.97438 * 3 2 1 6 6 C 1.39817 * 120.08784 * 0.02562 * 5 3 2 7 7 C 1.37665 * 119.90166 * 179.97438 * 6 5 3 8 8 C 1.39030 * 120.09483 * 0.28148 * 7 6 5 9 9 O 1.35700 * 119.90992 * 179.71887 * 8 7 6 10 10 C 1.42897 * 116.99450 * 0.02562 * 9 8 7 11 11 C 1.38998 * 120.18591 * 359.44047 * 8 7 6 12 12 C 1.50697 * 119.95472 * 180.27891 * 11 8 7 13 13 H 1.08998 * 109.47042 * 325.27538 * 12 11 8 14 14 O 1.42898 * 109.47234 * 205.27506 * 12 11 8 15 15 C 1.50699 * 109.47157 * 85.27578 * 12 11 8 16 16 H 1.08003 * 119.99576 * 0.02562 * 15 12 11 17 17 C 1.37876 * 119.99994 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99997 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99973 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47197 * 89.99910 * 19 17 15 21 21 H 1.48499 * 109.46889 * 210.00296 * 19 17 15 22 22 H 1.48506 * 109.46833 * 330.00122 * 19 17 15 23 23 C 1.37702 * 120.09091 * 0.55871 * 11 8 7 24 24 H 1.09006 * 109.47030 * 300.00568 * 1 2 3 25 25 H 1.09005 * 109.46813 * 59.99734 * 1 2 3 26 26 H 1.08999 * 109.47369 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.05037 * 359.95441 * 6 5 3 28 28 H 1.08002 * 119.94957 * 179.97438 * 7 6 5 29 29 H 1.09006 * 109.46605 * 179.97438 * 10 9 8 30 30 H 1.09002 * 109.47606 * 299.99535 * 10 9 8 31 31 H 1.09002 * 109.47251 * 60.00431 * 10 9 8 32 32 H 0.96705 * 114.00555 * 300.00158 * 14 12 11 33 33 H 0.96999 * 119.99967 * 179.97438 * 18 17 15 34 34 H 1.08000 * 120.04746 * 179.74875 * 23 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2197 -0.0005 5 6 3.5365 1.2778 0.0006 6 6 4.2998 0.1063 0.0006 7 6 5.6743 0.1828 0.0006 8 6 6.3035 1.4226 0.0065 9 8 7.6586 1.4936 0.0122 10 6 8.3730 0.2560 0.0113 11 6 5.5484 2.5896 0.0007 12 6 6.2359 3.9306 0.0008 13 1 7.1507 3.8699 0.5903 14 8 5.3666 4.9115 0.5701 15 6 6.5754 4.3212 -1.4146 16 1 6.3185 3.6642 -2.2324 17 6 7.2129 5.5177 -1.6655 18 7 7.5251 6.3179 -0.6696 19 14 7.6330 6.0022 -3.4200 20 1 6.5030 6.7664 -4.0066 21 1 8.8550 6.8460 -3.4214 22 1 7.8751 4.7791 -4.2268 23 6 4.1731 2.5221 0.0007 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.8118 -0.8571 0.0009 28 1 6.2646 -0.7215 0.0010 29 1 9.4447 0.4552 0.0158 30 1 8.1061 -0.3184 0.8984 31 1 8.1133 -0.3127 -0.8816 32 1 4.5309 5.0194 0.0957 33 1 7.9740 7.1595 -0.8462 34 1 3.5871 3.4293 0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535731337.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:43 Heat of formation + Delta-G solvation = -168.352032 kcal Electronic energy + Delta-G solvation = -20128.515599 eV Core-core repulsion = 16798.271349 eV Total energy + Delta-G solvation = -3330.244250 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.71402 -40.89142 -38.63530 -37.48928 -37.18741 -34.29688 -32.59965 -31.58080 -29.02840 -28.61170 -27.81779 -25.18960 -24.55071 -22.42223 -21.63968 -19.34772 -18.95965 -18.68039 -18.05729 -17.34302 -17.03744 -16.68708 -16.57416 -16.40406 -15.47602 -15.12580 -14.93511 -14.68983 -14.41545 -14.18330 -13.69960 -13.60508 -13.25333 -13.03520 -12.86012 -12.81307 -12.68090 -12.15070 -12.05737 -11.96305 -11.78829 -11.65190 -11.21857 -10.77127 -10.39044 -9.86431 -9.16739 -8.12164 -6.38549 -0.24131 0.38590 1.39192 1.40212 1.50340 1.52866 1.71299 2.38913 2.43007 2.79775 3.11412 3.73552 3.83519 3.88078 4.11363 4.26928 4.35485 4.36825 4.42366 4.46942 4.47321 4.61838 4.72201 4.76482 4.93277 5.04831 5.19765 5.26497 5.36076 5.60185 5.66972 5.80507 6.03953 6.50076 6.69052 6.71508 7.27690 7.45071 8.91269 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.018299 B = 0.006228 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.742607 B = 4494.638360 C = 5391.110891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.519 3.481 4 O -0.544 6.544 5 C -0.186 4.186 6 C -0.019 4.019 7 C -0.214 4.214 8 C 0.162 3.838 9 O -0.327 6.327 10 C 0.012 3.988 11 C -0.152 4.152 12 C 0.273 3.727 13 H 0.037 0.963 14 O -0.578 6.578 15 C -0.565 4.565 16 H 0.051 0.949 17 C 0.028 3.972 18 N -0.899 5.899 19 Si 0.960 3.040 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.027 4.027 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.140 0.860 27 H 0.173 0.827 28 H 0.175 0.825 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.355 0.645 33 H 0.263 0.737 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.413 -18.398 0.434 19.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.366 3.634 4 O -0.436 6.436 5 C -0.187 4.187 6 C -0.037 4.037 7 C -0.233 4.233 8 C 0.115 3.885 9 O -0.239 6.239 10 C -0.082 4.082 11 C -0.153 4.153 12 C 0.216 3.784 13 H 0.054 0.946 14 O -0.382 6.382 15 C -0.603 4.603 16 H 0.069 0.931 17 C -0.175 4.175 18 N -0.536 5.536 19 Si 0.785 3.215 20 H -0.199 1.199 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.045 4.045 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.158 0.842 27 H 0.191 0.809 28 H 0.192 0.808 29 H 0.129 0.871 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.201 0.799 33 H 0.072 0.928 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.916 -17.754 0.927 18.736 hybrid contribution -0.253 0.740 -1.112 1.359 sum -6.169 -17.014 -0.186 18.099 Atomic orbital electron populations 1.23604 0.74357 1.06003 1.02488 1.86516 1.25163 1.31121 1.84073 1.21142 0.89002 0.81554 0.71675 1.90814 1.67455 1.37256 1.48097 1.18951 0.89149 0.94896 1.15699 1.21433 0.92688 0.98007 0.91585 1.21504 0.95821 0.96351 1.09574 1.19365 0.83216 0.93771 0.92194 1.86213 1.15477 1.35294 1.86953 1.23473 0.97411 0.84321 1.02949 1.20424 0.93503 0.96642 1.04718 1.17976 0.87392 0.80162 0.92902 0.94551 1.86544 1.31815 1.62846 1.57040 1.21719 1.40701 1.04942 0.92927 0.93073 1.25874 0.94239 0.96187 1.01166 1.70207 1.39575 1.10949 1.32908 0.85552 0.77906 0.78348 0.79744 1.19889 1.20404 1.19054 1.20691 0.92710 0.97322 0.93805 0.92080 0.92164 0.84186 0.80917 0.80778 0.87105 0.90416 0.90838 0.79871 0.92831 0.85793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.57 113.37 1.20 1.69 16 2 O -0.35 -8.66 9.81 -56.64 -0.56 -9.22 16 3 C 0.52 16.82 7.89 70.25 0.55 17.38 16 4 O -0.54 -20.90 16.13 19.81 0.32 -20.58 16 5 C -0.19 -6.25 5.87 -20.09 -0.12 -6.37 16 6 C -0.02 -0.51 9.61 22.52 0.22 -0.29 16 7 C -0.21 -5.81 9.01 22.32 0.20 -5.61 16 8 C 0.16 6.08 6.67 22.64 0.15 6.23 16 9 O -0.33 -12.27 9.60 -90.20 -0.87 -13.14 16 10 C 0.01 0.28 9.81 113.37 1.11 1.39 16 11 C -0.15 -6.82 5.01 -19.81 -0.10 -6.92 16 12 C 0.27 14.94 2.79 29.10 0.08 15.03 16 13 H 0.04 2.24 7.67 -2.39 -0.02 2.22 16 14 O -0.58 -32.24 12.38 -148.98 -1.84 -34.08 16 15 C -0.57 -32.49 8.75 25.60 0.22 -32.26 16 16 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 17 C 0.03 1.59 5.40 84.65 0.46 2.05 16 18 N -0.90 -55.14 12.84 21.45 0.28 -54.86 16 19 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 C -0.03 -1.10 8.84 22.51 0.20 -0.90 16 24 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 25 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 26 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.17 3.15 7.60 -2.91 -0.02 3.13 16 28 H 0.17 3.13 6.28 -2.91 -0.02 3.11 16 29 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.08 1.33 7.65 -2.39 -0.02 1.31 16 31 H 0.07 1.34 7.65 -2.39 -0.02 1.33 16 32 H 0.36 17.88 7.31 -74.05 -0.54 17.33 16 33 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 34 H 0.12 5.32 5.98 -2.91 -0.02 5.30 16 Total: -1.00 -76.17 300.58 4.13 -72.05 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.60 Total: 21.73 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 4.18 Total: -8.59 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.28 Total: -54.86 kcal Atomic # 8 Polarization: -74.08 SS G_CDS: -2.95 Total: -77.02 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -76.17 4.13 -72.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535731337.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.306 kcal (2) G-P(sol) polarization free energy of solvation -76.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds