Wall clock time and date at job start Mon Mar 30 2020 04:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35977 * 116.99547 * 2 1 4 4 C 1.38703 * 119.97929 * 359.97438 * 3 2 1 5 5 C 1.38267 * 120.12280 * 180.26086 * 4 3 2 6 6 C 1.38473 * 120.07274 * 359.48612 * 5 4 3 7 7 O 1.36090 * 120.02690 * 180.23603 * 6 5 4 8 8 C 1.42894 * 117.00116 * 0.29841 * 7 6 5 9 9 C 1.50701 * 109.47098 * 180.02562 * 8 7 6 10 10 O 1.21285 * 120.00157 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99814 * 179.97438 * 9 8 7 12 12 C 1.37100 * 119.99965 * 180.02562 * 11 9 8 13 13 H 1.08006 * 119.99686 * 359.97438 * 12 11 9 14 14 C 1.38951 * 120.00124 * 180.02562 * 12 11 9 15 15 N 1.31410 * 119.99802 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 119.99928 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47410 * 89.99847 * 16 14 12 18 18 H 1.48502 * 109.47008 * 210.00084 * 16 14 12 19 19 H 1.48504 * 109.47166 * 329.99647 * 16 14 12 20 20 C 1.39307 * 119.94650 * 0.53190 * 6 5 4 21 21 N 1.39945 * 120.06085 * 179.74454 * 20 6 5 22 22 C 1.38651 * 119.97075 * 180.02562 * 3 2 1 23 23 H 1.08996 * 109.47155 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47238 * 300.00495 * 1 2 3 25 25 H 1.08994 * 109.46679 * 60.00646 * 1 2 3 26 26 H 1.08002 * 119.93503 * 359.97438 * 4 3 2 27 27 H 1.08003 * 119.96671 * 179.74866 * 5 4 3 28 28 H 1.09000 * 109.47462 * 300.00291 * 8 7 6 29 29 H 1.08997 * 109.47406 * 60.00133 * 8 7 6 30 30 H 0.97002 * 119.99973 * 0.02562 * 11 9 8 31 31 H 0.97003 * 119.99718 * 179.97438 * 15 14 12 32 32 H 0.96995 * 120.00250 * 179.97438 * 21 20 6 33 33 H 0.97001 * 119.99947 * 359.97438 * 21 20 6 34 34 H 1.07999 * 120.03337 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2904 2.3745 -0.0005 5 6 1.9149 3.6081 -0.0060 6 6 3.2974 3.6860 -0.0002 7 8 3.9111 4.9006 -0.0007 8 6 3.0673 6.0538 -0.0008 9 6 3.9173 7.2982 -0.0020 10 8 5.1267 7.2066 -0.0032 11 7 3.3335 8.5130 -0.0028 12 6 4.1068 9.6452 -0.0044 13 1 5.1837 9.5635 -0.0047 14 6 3.5049 10.8976 -0.0047 15 7 4.2462 11.9827 -0.0058 16 14 1.6423 11.0388 -0.0021 17 1 1.1507 11.0774 1.3986 18 1 1.2394 12.2846 -0.7027 19 1 1.0561 9.8665 -0.7003 20 6 4.0596 2.5199 0.0000 21 7 5.4570 2.5958 0.0004 22 6 3.4309 1.2836 -0.0005 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5137 -0.8900 26 1 0.2119 2.3163 -0.0014 27 1 1.3238 4.5120 -0.0105 28 1 2.4377 6.0434 -0.8905 29 1 2.4383 6.0439 0.8894 30 1 2.3663 8.5863 -0.0022 31 1 3.8260 12.8570 -0.0063 32 1 5.9868 1.7833 0.0009 33 1 5.8957 3.4609 0.0003 34 1 4.0193 0.3779 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019269859.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:07 Heat of formation + Delta-G solvation = -75.674510 kcal Electronic energy + Delta-G solvation = -19342.052947 eV Core-core repulsion = 16048.120247 eV Total energy + Delta-G solvation = -3293.932700 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.42836 -39.12409 -38.09910 -36.42067 -34.07614 -34.00846 -31.78098 -30.17437 -28.95722 -27.57938 -27.08133 -24.55634 -22.48133 -21.63884 -19.57255 -18.57920 -18.36475 -17.60470 -17.15678 -15.95573 -15.86456 -15.66939 -15.39567 -15.30979 -14.98661 -14.44868 -13.75439 -13.65104 -13.26087 -12.97547 -12.65583 -12.63348 -12.50434 -12.17277 -11.72082 -11.64170 -11.27026 -10.87835 -10.73999 -10.64707 -10.12828 -10.04519 -9.66312 -8.61744 -8.27879 -8.22551 -7.14285 -6.38143 -3.90821 1.40444 1.61277 2.97430 3.01982 3.09848 3.14030 3.24539 3.58644 3.82929 4.03462 4.04295 4.60816 4.81030 4.98684 5.00172 5.02413 5.12215 5.17771 5.28299 5.34621 5.51602 5.57376 5.67766 5.79046 5.82907 6.29901 6.31448 6.50757 7.24828 7.34162 7.47631 7.76148 7.88603 8.03108 8.50188 8.85646 9.31644 9.68827 10.74468 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.031272 B = 0.003917 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.167755 B = 7145.760336 C = 8020.480534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.134 3.866 4 C -0.229 4.229 5 C -0.129 4.129 6 C 0.028 3.972 7 O -0.289 6.289 8 C 0.054 3.946 9 C 0.451 3.549 10 O -0.557 6.557 11 N -0.582 5.582 12 C -0.307 4.307 13 H 0.122 0.878 14 C 0.044 3.956 15 N -0.877 5.877 16 Si 0.880 3.120 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.269 1.269 20 C 0.236 3.764 21 N -0.866 5.866 22 C -0.205 4.205 23 H 0.095 0.905 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.125 0.875 27 H 0.131 0.869 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.372 0.628 31 H 0.275 0.725 32 H 0.397 0.603 33 H 0.412 0.588 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.726 -20.493 0.031 22.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.234 6.234 3 C 0.088 3.912 4 C -0.250 4.250 5 C -0.148 4.148 6 C -0.021 4.021 7 O -0.202 6.202 8 C -0.025 4.025 9 C 0.236 3.764 10 O -0.438 6.438 11 N -0.222 5.222 12 C -0.436 4.436 13 H 0.139 0.861 14 C -0.160 4.160 15 N -0.516 5.516 16 Si 0.706 3.294 17 H -0.195 1.195 18 H -0.200 1.200 19 H -0.194 1.194 20 C 0.130 3.870 21 N -0.406 5.406 22 C -0.230 4.230 23 H 0.114 0.886 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.143 0.857 27 H 0.149 0.851 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.205 0.795 31 H 0.086 0.914 32 H 0.225 0.775 33 H 0.242 0.758 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.610 -20.436 0.030 22.176 hybrid contribution -1.725 0.568 -0.016 1.817 sum -10.335 -19.868 0.013 22.395 Atomic orbital electron populations 1.22993 0.78720 1.03461 1.01373 1.86028 1.21072 1.27150 1.89195 1.18469 0.91458 0.83872 0.97361 1.20713 0.99542 0.91471 1.13320 1.20823 0.92625 0.98377 1.03016 1.18463 0.90940 0.84918 1.07748 1.86089 1.33924 1.10643 1.89522 1.22404 0.93294 0.84898 1.01953 1.19239 0.88713 0.83392 0.85066 1.90588 1.13957 1.86013 1.53287 1.42037 1.07900 1.05395 1.66909 1.19425 0.94046 0.81569 1.48532 0.86090 1.25035 0.98554 0.94992 0.97388 1.69616 1.35506 0.97843 1.48661 0.86670 0.85069 0.78662 0.79013 1.19452 1.19997 1.19428 1.16732 0.84372 0.90163 0.95762 1.42406 1.02460 1.11578 1.84181 1.19433 0.91785 0.95770 1.15974 0.88627 0.92755 0.92752 0.85741 0.85138 0.90652 0.90636 0.79505 0.91434 0.77544 0.75777 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.63 10.50 -19.67 -0.21 -3.84 16 3 C 0.13 1.68 6.68 -39.26 -0.26 1.42 16 4 C -0.23 -2.76 9.03 -39.40 -0.36 -3.11 16 5 C -0.13 -1.71 9.03 -39.48 -0.36 -2.07 16 6 C 0.03 0.43 6.70 -39.10 -0.26 0.17 16 7 O -0.29 -5.24 8.91 -39.94 -0.36 -5.60 16 8 C 0.05 0.93 5.22 36.01 0.19 1.12 16 9 C 0.45 10.40 7.86 -10.98 -0.09 10.31 16 10 O -0.56 -15.36 16.07 -14.36 -0.23 -15.59 16 11 N -0.58 -13.71 5.09 -10.96 -0.06 -13.76 16 12 C -0.31 -8.60 10.16 -14.93 -0.15 -8.76 16 13 H 0.12 3.87 7.39 -52.48 -0.39 3.49 16 14 C 0.04 1.19 5.50 -17.47 -0.10 1.09 16 15 N -0.88 -25.25 13.96 55.50 0.77 -24.47 16 16 Si 0.88 18.87 27.74 -169.99 -4.71 14.16 16 17 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 19 H -0.27 -5.20 6.52 56.52 0.37 -4.84 16 20 C 0.24 3.31 6.77 -83.59 -0.57 2.74 16 21 N -0.87 -10.58 9.09 32.50 0.30 -10.29 16 22 C -0.21 -2.61 9.83 -39.26 -0.39 -2.99 16 23 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 25 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 26 H 0.12 1.19 6.28 -52.49 -0.33 0.86 16 27 H 0.13 1.50 6.29 -52.48 -0.33 1.17 16 28 H 0.08 1.10 7.65 -51.93 -0.40 0.71 16 29 H 0.08 1.10 7.67 -51.93 -0.40 0.70 16 30 H 0.37 7.53 5.76 -40.82 -0.24 7.29 16 31 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.40 3.61 8.84 -40.82 -0.36 3.25 16 33 H 0.41 5.59 8.19 -40.82 -0.33 5.26 16 34 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 296.59 15.07 4.47 4.47 Total: -1.00 -33.79 296.59 -4.95 -38.74 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -3.58 Total: 15.05 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -1.34 Total: 1.13 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 1.01 Total: -48.52 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.79 Total: -25.02 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -4.71 Total: 14.16 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.79 -4.95 -38.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019269859.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.933 kcal (2) G-P(sol) polarization free energy of solvation -33.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds