Wall clock time and date at job start Mon Mar 30 2020 04:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35977 * 116.99547 * 2 1 4 4 C 1.38703 * 119.97929 * 359.97438 * 3 2 1 5 5 C 1.38267 * 120.12280 * 180.26086 * 4 3 2 6 6 C 1.38473 * 120.07274 * 359.48612 * 5 4 3 7 7 O 1.36090 * 120.02690 * 180.23603 * 6 5 4 8 8 C 1.42894 * 117.00116 * 0.29841 * 7 6 5 9 9 C 1.50701 * 109.47098 * 180.02562 * 8 7 6 10 10 O 1.21285 * 120.00157 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99814 * 179.97438 * 9 8 7 12 12 C 1.37100 * 119.99965 * 180.02562 * 11 9 8 13 13 H 1.08006 * 119.99686 * 359.97438 * 12 11 9 14 14 C 1.38951 * 120.00124 * 180.02562 * 12 11 9 15 15 N 1.31410 * 119.99802 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 119.99928 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47410 * 89.99847 * 16 14 12 18 18 H 1.48502 * 109.47008 * 210.00084 * 16 14 12 19 19 H 1.48504 * 109.47166 * 329.99647 * 16 14 12 20 20 C 1.39307 * 119.94650 * 0.53190 * 6 5 4 21 21 N 1.39945 * 120.06085 * 179.74454 * 20 6 5 22 22 C 1.38651 * 119.97075 * 180.02562 * 3 2 1 23 23 H 1.08996 * 109.47155 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47238 * 300.00495 * 1 2 3 25 25 H 1.08994 * 109.46679 * 60.00646 * 1 2 3 26 26 H 1.08002 * 119.93503 * 359.97438 * 4 3 2 27 27 H 1.08003 * 119.96671 * 179.74866 * 5 4 3 28 28 H 1.09000 * 109.47462 * 300.00291 * 8 7 6 29 29 H 1.08997 * 109.47406 * 60.00133 * 8 7 6 30 30 H 0.97002 * 119.99973 * 0.02562 * 11 9 8 31 31 H 0.97003 * 119.99718 * 179.97438 * 15 14 12 32 32 H 0.96995 * 120.00250 * 179.97438 * 21 20 6 33 33 H 0.97001 * 119.99947 * 359.97438 * 21 20 6 34 34 H 1.07999 * 120.03337 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2904 2.3745 -0.0005 5 6 1.9149 3.6081 -0.0060 6 6 3.2974 3.6860 -0.0002 7 8 3.9111 4.9006 -0.0007 8 6 3.0673 6.0538 -0.0008 9 6 3.9173 7.2982 -0.0020 10 8 5.1267 7.2066 -0.0032 11 7 3.3335 8.5130 -0.0028 12 6 4.1068 9.6452 -0.0044 13 1 5.1837 9.5635 -0.0047 14 6 3.5049 10.8976 -0.0047 15 7 4.2462 11.9827 -0.0058 16 14 1.6423 11.0388 -0.0021 17 1 1.1507 11.0774 1.3986 18 1 1.2394 12.2846 -0.7027 19 1 1.0561 9.8665 -0.7003 20 6 4.0596 2.5199 0.0000 21 7 5.4570 2.5958 0.0004 22 6 3.4309 1.2836 -0.0005 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5137 -0.8900 26 1 0.2119 2.3163 -0.0014 27 1 1.3238 4.5120 -0.0105 28 1 2.4377 6.0434 -0.8905 29 1 2.4383 6.0439 0.8894 30 1 2.3663 8.5863 -0.0022 31 1 3.8260 12.8570 -0.0063 32 1 5.9868 1.7833 0.0009 33 1 5.8957 3.4609 0.0003 34 1 4.0193 0.3779 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019269859.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:06 Heat of formation + Delta-G solvation = -102.273786 kcal Electronic energy + Delta-G solvation = -19343.206378 eV Core-core repulsion = 16048.120247 eV Total energy + Delta-G solvation = -3295.086131 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.45814 -40.46067 -39.52080 -37.54983 -36.06016 -34.97710 -33.84117 -31.10210 -30.29597 -28.68782 -27.80767 -26.40010 -23.59283 -22.58656 -21.44239 -20.42917 -19.38643 -18.64802 -18.23795 -17.45427 -17.18477 -16.91923 -16.49950 -16.37451 -16.16988 -15.67338 -15.22146 -15.15897 -14.75285 -14.34210 -14.00659 -13.82605 -13.79097 -13.28733 -13.00205 -12.71702 -12.45352 -12.42677 -11.98558 -11.86612 -11.74461 -11.56403 -11.04842 -10.52709 -10.32014 -9.16689 -8.44649 -8.15590 -6.07869 0.44377 0.63680 1.30657 1.35613 1.45506 1.81331 1.92574 2.22319 2.37787 2.85400 3.05313 3.10308 3.18637 3.85950 3.95206 4.15903 4.21481 4.26595 4.28143 4.43861 4.49960 4.60387 4.76928 4.82098 4.93108 5.35388 5.38605 5.48122 5.57745 5.86998 6.22616 6.49634 6.52757 6.70559 6.80825 6.97984 7.29169 7.83481 8.72516 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.031272 B = 0.003917 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.167755 B = 7145.760336 C = 8020.480534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.133 3.867 4 C -0.229 4.229 5 C -0.125 4.125 6 C -0.007 4.007 7 O -0.319 6.319 8 C 0.065 3.935 9 C 0.448 3.552 10 O -0.614 6.614 11 N -0.577 5.577 12 C -0.334 4.334 13 H 0.056 0.944 14 C -0.011 4.011 15 N -0.930 5.930 16 Si 0.965 3.035 17 H -0.254 1.254 18 H -0.274 1.274 19 H -0.227 1.227 20 C 0.223 3.777 21 N -0.865 5.865 22 C -0.213 4.213 23 H 0.117 0.883 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.153 0.847 27 H 0.152 0.848 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.394 0.606 31 H 0.282 0.718 32 H 0.409 0.591 33 H 0.404 0.596 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.025 -22.259 -0.009 26.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.087 3.913 4 C -0.250 4.250 5 C -0.144 4.144 6 C -0.055 4.055 7 O -0.233 6.233 8 C -0.013 4.013 9 C 0.235 3.765 10 O -0.498 6.498 11 N -0.220 5.220 12 C -0.463 4.463 13 H 0.074 0.926 14 C -0.211 4.211 15 N -0.570 5.570 16 Si 0.784 3.216 17 H -0.179 1.179 18 H -0.199 1.199 19 H -0.150 1.150 20 C 0.116 3.884 21 N -0.405 5.405 22 C -0.237 4.237 23 H 0.135 0.865 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.170 0.830 27 H 0.170 0.830 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.230 0.770 31 H 0.091 0.909 32 H 0.239 0.761 33 H 0.233 0.767 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.930 -22.257 -0.011 25.740 hybrid contribution -0.310 0.985 0.000 1.033 sum -13.240 -21.272 -0.011 25.056 Atomic orbital electron populations 1.23320 0.76550 1.05369 1.02292 1.86025 1.23337 1.26572 1.88858 1.18669 0.91583 0.84716 0.96351 1.21016 1.00957 0.90705 1.12296 1.21098 0.91780 0.99780 1.01763 1.18729 0.92181 0.83964 1.10621 1.86029 1.35139 1.11643 1.90501 1.22300 0.91902 0.81900 1.05246 1.20433 0.88719 0.84997 0.82350 1.90562 1.17036 1.87145 1.55102 1.41792 1.08573 1.04429 1.67159 1.18996 0.92031 0.84187 1.51102 0.92606 1.26153 1.05832 0.93503 0.95576 1.69797 1.38918 0.98870 1.49388 0.85369 0.75873 0.80160 0.80183 1.17867 1.19870 1.14992 1.16981 0.84865 0.90485 0.96039 1.42399 1.02330 1.11748 1.84035 1.19624 0.92472 0.95718 1.15928 0.86452 0.91768 0.91767 0.82964 0.83018 0.87142 0.87047 0.76994 0.90887 0.76117 0.76746 0.83710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -6.63 10.50 -93.30 -0.98 -7.61 16 3 C 0.13 3.00 6.68 22.48 0.15 3.15 16 4 C -0.23 -4.69 9.03 22.39 0.20 -4.49 16 5 C -0.12 -2.91 9.03 22.33 0.20 -2.71 16 6 C -0.01 -0.21 6.70 22.58 0.15 -0.06 16 7 O -0.32 -11.34 8.91 -75.54 -0.67 -12.01 16 8 C 0.06 2.08 5.22 71.24 0.37 2.46 16 9 C 0.45 20.71 7.86 87.66 0.69 21.40 16 10 O -0.61 -35.50 16.07 15.99 0.26 -35.24 16 11 N -0.58 -26.91 5.09 -306.98 -1.56 -28.47 16 12 C -0.33 -19.46 10.16 84.04 0.85 -18.60 16 13 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 14 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 15 N -0.93 -55.35 13.96 21.66 0.30 -55.05 16 16 Si 0.97 37.33 27.74 68.60 1.90 39.24 16 17 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 18 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 19 H -0.23 -7.20 6.52 99.48 0.65 -6.55 16 20 C 0.22 6.08 6.77 38.21 0.26 6.34 16 21 N -0.86 -21.33 9.09 -51.09 -0.46 -21.79 16 22 C -0.21 -5.11 9.83 22.48 0.22 -4.88 16 23 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 25 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 26 H 0.15 2.19 6.28 -2.91 -0.02 2.17 16 27 H 0.15 2.77 6.29 -2.91 -0.02 2.75 16 28 H 0.11 2.78 7.65 -2.39 -0.02 2.77 16 29 H 0.11 2.79 7.67 -2.39 -0.02 2.77 16 30 H 0.39 14.68 5.76 -92.71 -0.53 14.15 16 31 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.41 7.45 8.84 -92.71 -0.82 6.63 16 33 H 0.40 11.41 8.19 -92.71 -0.76 10.65 16 34 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -79.57 296.59 2.47 -77.10 By element: Atomic # 1 Polarization: 41.07 SS G_CDS: -1.00 Total: 40.07 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 4.68 Total: 3.77 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -1.72 Total: -105.31 kcal Atomic # 8 Polarization: -53.47 SS G_CDS: -1.40 Total: -54.86 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 1.90 Total: 39.24 kcal Total: -79.57 2.47 -77.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019269859.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.174 kcal (2) G-P(sol) polarization free energy of solvation -79.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds