Wall clock time and date at job start Mon Mar 30 2020 04:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36089 * 117.00312 * 2 1 4 4 C 1.38539 * 119.99909 * 359.73205 * 3 2 1 5 5 C 1.38202 * 120.07262 * 179.72248 * 4 3 2 6 6 C 1.38861 * 120.06774 * 0.54668 * 5 4 3 7 7 N 1.39931 * 119.99901 * 179.70087 * 6 5 4 8 8 C 1.38820 * 120.00093 * 359.72448 * 6 5 4 9 9 C 1.38520 * 119.92942 * 359.97438 * 8 6 5 10 10 O 1.35985 * 120.03761 * 179.97438 * 9 8 6 11 11 C 1.42899 * 116.99923 * 0.02756 * 10 9 8 12 12 C 1.50703 * 109.46853 * 179.97438 * 11 10 9 13 13 O 1.21295 * 120.00145 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99751 * 179.97438 * 12 11 10 15 15 C 1.37096 * 119.99703 * 180.02562 * 14 12 11 16 16 H 1.08000 * 120.00666 * 359.97438 * 15 14 12 17 17 C 1.38958 * 119.99891 * 180.02562 * 15 14 12 18 18 N 1.31406 * 119.99912 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00160 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47240 * 89.99515 * 19 17 15 21 21 H 1.48501 * 109.46995 * 210.00014 * 19 17 15 22 22 H 1.48507 * 109.46938 * 329.99737 * 19 17 15 23 23 H 1.09001 * 109.47103 * 300.00175 * 1 2 3 24 24 H 1.09004 * 109.47054 * 59.99679 * 1 2 3 25 25 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 26 26 H 1.08004 * 119.96107 * 359.97048 * 4 3 2 27 27 H 1.08006 * 119.96829 * 180.24810 * 5 4 3 28 28 H 0.97006 * 119.99526 * 180.02562 * 7 6 5 29 29 H 0.96994 * 120.00275 * 0.02957 * 7 6 5 30 30 H 1.07997 * 120.03704 * 180.02562 * 8 6 5 31 31 H 1.08998 * 109.46722 * 299.99376 * 11 10 9 32 32 H 1.08993 * 109.47426 * 59.99661 * 11 10 9 33 33 H 0.96995 * 120.00143 * 0.02562 * 14 12 11 34 34 H 0.97001 * 120.00258 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0470 1.2125 0.0000 4 6 1.2925 2.3744 -0.0056 5 6 1.9183 3.6066 0.0002 6 6 3.3049 3.6827 0.0002 7 7 3.9371 4.9310 -0.0003 8 6 4.0638 2.5203 0.0001 9 6 3.4364 1.2853 0.0006 10 8 4.1777 0.1452 0.0000 11 6 5.5988 0.2954 -0.0005 12 6 6.2476 -1.0648 -0.0004 13 8 5.5607 -2.0644 -0.0005 14 7 7.5913 -1.1704 -0.0014 15 6 8.1815 -2.4078 -0.0019 16 1 7.5699 -3.2979 -0.0011 17 6 9.5668 -2.5168 -0.0023 18 7 10.3110 -1.4338 -0.0028 19 14 10.3711 -4.2027 -0.0037 20 1 10.5838 -4.6486 -1.4042 21 1 11.6788 -4.1279 0.6960 22 1 9.4900 -5.1720 0.6960 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2140 2.3172 -0.0105 27 1 1.3285 4.5114 -0.0002 28 1 4.9057 4.9841 -0.0007 29 1 3.4068 5.7432 -0.0002 30 1 5.1422 2.5788 0.0005 31 1 5.9057 0.8447 -0.8905 32 1 5.9065 0.8444 0.8894 33 1 8.1406 -0.3710 -0.0017 34 1 11.2781 -1.5098 -0.0035 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019489158.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:44 Heat of formation + Delta-G solvation = -79.772436 kcal Electronic energy + Delta-G solvation = -19448.369530 eV Core-core repulsion = 16154.259131 eV Total energy + Delta-G solvation = -3294.110399 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.36207 -38.62136 -37.70496 -37.06231 -33.96400 -33.53196 -31.31600 -30.18861 -28.88612 -27.68933 -26.56374 -24.59922 -22.28271 -21.80125 -19.44957 -18.43962 -18.02451 -17.26855 -17.14787 -15.93654 -15.85974 -15.36527 -15.20469 -15.18193 -14.61661 -14.48455 -13.90432 -13.61924 -13.40570 -12.74818 -12.61039 -12.50007 -11.98357 -11.56861 -11.56435 -11.35235 -11.11711 -11.00942 -10.73143 -10.39777 -10.24769 -9.69133 -9.54522 -8.41431 -8.35560 -8.01773 -7.06676 -6.45056 -3.86200 1.40718 1.72392 3.17363 3.24849 3.28577 3.39859 3.51527 3.81054 3.83995 3.88960 4.20326 4.80079 4.95362 5.12313 5.17991 5.19701 5.23632 5.31567 5.43184 5.54101 5.59041 5.64141 5.73994 5.99797 6.15719 6.22112 6.37895 6.64894 7.33689 7.36271 7.53137 7.69978 7.86819 8.02044 8.56187 9.13739 9.46240 9.97692 10.72617 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027477 B = 0.004085 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.788811 B = 6852.058172 C = 7850.398899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.041 3.959 4 C -0.125 4.125 5 C -0.206 4.206 6 C 0.220 3.780 7 N -0.880 5.880 8 C -0.256 4.256 9 C 0.158 3.842 10 O -0.270 6.270 11 C 0.050 3.950 12 C 0.442 3.558 13 O -0.570 6.570 14 N -0.557 5.557 15 C -0.300 4.300 16 H 0.105 0.895 17 C 0.024 3.976 18 N -0.901 5.901 19 Si 0.933 3.067 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.268 1.268 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.096 0.904 26 H 0.131 0.869 27 H 0.120 0.880 28 H 0.397 0.603 29 H 0.396 0.604 30 H 0.135 0.865 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.393 0.607 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.745 13.727 0.010 19.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C -0.005 4.005 4 C -0.145 4.145 5 C -0.229 4.229 6 C 0.116 3.884 7 N -0.420 5.420 8 C -0.279 4.279 9 C 0.110 3.890 10 O -0.181 6.181 11 C -0.029 4.029 12 C 0.227 3.773 13 O -0.453 6.453 14 N -0.195 5.195 15 C -0.429 4.429 16 H 0.123 0.877 17 C -0.178 4.178 18 N -0.542 5.542 19 Si 0.759 3.241 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.193 1.193 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.114 0.886 26 H 0.149 0.851 27 H 0.138 0.862 28 H 0.225 0.775 29 H 0.224 0.776 30 H 0.153 0.847 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.227 0.773 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.000 12.592 0.015 18.830 hybrid contribution 0.958 0.535 -0.012 1.098 sum -13.042 13.128 0.003 18.504 Atomic orbital electron populations 1.22967 0.79602 1.03564 1.00455 1.86277 1.20018 1.25606 1.89813 1.18014 0.88993 0.85253 1.08256 1.20715 0.99334 0.90946 1.03475 1.20154 0.92139 0.97346 1.13280 1.17372 0.91379 0.85509 0.94137 1.42415 1.09175 1.04430 1.86009 1.20495 1.00106 0.90123 1.17171 1.18141 0.88435 0.85800 0.96581 1.86329 1.17599 1.26825 1.87341 1.22511 0.79381 0.98969 1.02038 1.19345 0.83384 0.89059 0.85542 1.90582 1.62493 1.37726 1.54472 1.41687 1.03725 1.09567 1.64505 1.19732 0.89944 0.85392 1.47811 0.87686 1.25275 0.96141 0.99283 0.97084 1.69607 1.06096 1.28193 1.50301 0.85815 0.78292 0.81490 0.78465 1.20311 1.20873 1.19287 0.93278 0.93289 0.88595 0.85088 0.86190 0.77461 0.77627 0.84720 0.90508 0.90516 0.77319 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.30 -5.12 10.28 -34.63 -0.36 -5.48 16 3 C 0.04 0.67 6.70 -39.14 -0.26 0.40 16 4 C -0.13 -1.56 9.03 -39.48 -0.36 -1.92 16 5 C -0.21 -2.36 9.89 -39.36 -0.39 -2.75 16 6 C 0.22 2.65 6.75 -83.71 -0.57 2.08 16 7 N -0.88 -7.45 9.10 32.44 0.30 -7.15 16 8 C -0.26 -3.65 8.88 -39.26 -0.35 -4.00 16 9 C 0.16 2.77 6.70 -39.14 -0.26 2.51 16 10 O -0.27 -5.68 9.45 -47.36 -0.45 -6.13 16 11 C 0.05 0.97 5.22 36.01 0.19 1.16 16 12 C 0.44 11.09 7.86 -10.98 -0.09 11.00 16 13 O -0.57 -16.81 16.08 -14.36 -0.23 -17.04 16 14 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16 15 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 16 H 0.11 3.11 7.16 -52.49 -0.38 2.73 16 17 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 18 N -0.90 -24.32 13.05 55.50 0.72 -23.60 16 19 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 24 H 0.05 0.44 7.65 -51.93 -0.40 0.05 16 25 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.13 1.26 6.29 -52.48 -0.33 0.93 16 27 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 28 H 0.40 2.88 8.84 -40.82 -0.36 2.52 16 29 H 0.40 2.46 8.84 -40.82 -0.36 2.09 16 30 H 0.14 1.73 6.30 -52.49 -0.33 1.40 16 31 H 0.08 1.28 7.66 -51.93 -0.40 0.88 16 32 H 0.08 1.28 7.66 -51.93 -0.40 0.88 16 33 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 34 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 300.61 15.07 4.53 4.53 Total: -1.00 -34.86 300.61 -5.55 -40.41 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -3.65 Total: 11.07 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -1.33 Total: 1.75 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.96 Total: -45.14 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -1.03 Total: -28.65 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.86 -5.55 -40.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019489158.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.366 kcal (2) G-P(sol) polarization free energy of solvation -34.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds