Wall clock time and date at job start Mon Mar 30 2020 04:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 119.99757 * 2 1 4 4 H 1.48500 * 109.47535 * 270.00153 * 3 2 1 5 5 H 1.48504 * 109.47173 * 30.00524 * 3 2 1 6 6 H 1.48508 * 109.47149 * 150.00362 * 3 2 1 7 7 C 1.38943 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00340 * 179.97438 * 7 2 1 9 9 N 1.37104 * 119.99929 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99788 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00142 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99950 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47550 * 179.97438 * 12 10 9 14 14 C 1.46894 * 111.00559 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47515 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 13 17 17 C 1.38224 * 120.01147 * 99.99850 * 16 15 14 18 18 C 1.38218 * 120.02596 * 179.97438 * 17 16 15 19 19 C 1.38270 * 120.05109 * 0.02732 * 18 17 16 20 20 C 1.38170 * 120.02397 * 359.97438 * 19 18 17 21 21 C 1.38432 * 120.01370 * 279.72550 * 16 15 14 22 22 F 1.35102 * 120.02704 * 359.97438 * 21 16 15 23 23 H 0.96996 * 120.00021 * 359.97438 * 1 2 3 24 24 H 0.96992 * 120.00196 * 0.02562 * 9 7 2 25 25 H 1.09003 * 109.46949 * 59.99738 * 12 10 9 26 26 H 1.09005 * 109.47134 * 299.99717 * 12 10 9 27 27 H 1.00899 * 110.99900 * 56.04064 * 13 12 10 28 28 H 1.09002 * 109.47104 * 59.99767 * 14 13 12 29 29 H 1.08998 * 109.46828 * 300.00600 * 14 13 12 30 30 H 1.09002 * 109.47153 * 59.99762 * 15 14 13 31 31 H 1.09001 * 109.46832 * 299.99953 * 15 14 13 32 32 H 1.08002 * 119.98697 * 359.97438 * 17 16 15 33 33 H 1.07999 * 119.97411 * 180.02562 * 18 17 16 34 34 H 1.07995 * 119.98601 * 179.97438 * 19 18 17 35 35 H 1.08004 * 120.01264 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6527 0.7002 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1985 -5.9795 -0.0016 14 6 1.4983 -7.2708 -0.0028 15 6 2.5232 -8.4068 -0.0027 16 6 1.8048 -9.7315 -0.0032 17 6 1.6584 -10.4381 -1.1822 18 6 1.0000 -11.6534 -1.1830 19 6 0.4866 -12.1635 -0.0048 20 6 0.6318 -11.4590 1.1749 21 6 1.2962 -10.2440 1.1779 22 9 1.4440 -9.5571 2.3319 23 1 -0.4850 0.8400 0.0004 24 1 0.3535 -2.3907 -0.0005 25 1 0.6175 -4.9204 -0.8914 26 1 0.6169 -4.9209 0.8887 27 1 2.8334 -5.9127 0.7797 28 1 0.8737 -7.3446 -0.8931 29 1 0.8730 -7.3458 0.8868 30 1 3.1475 -8.3328 0.8878 31 1 3.1487 -8.3318 -0.8922 32 1 2.0586 -10.0404 -2.1031 33 1 0.8864 -12.2049 -2.1046 34 1 -0.0280 -13.1130 -0.0067 35 1 0.2303 -11.8575 2.0950 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020047678.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:34 Heat of formation + Delta-G solvation = -64.921744 kcal Electronic energy + Delta-G solvation = -18774.718562 eV Core-core repulsion = 15493.624926 eV Total energy + Delta-G solvation = -3281.093635 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.04481 -39.36547 -38.24974 -35.96141 -33.90995 -32.84924 -31.19137 -30.79115 -28.88222 -26.13442 -24.14139 -23.01877 -22.56884 -21.21877 -19.20799 -17.89310 -17.72754 -16.73107 -16.18435 -16.04895 -15.65807 -15.44687 -14.61757 -14.53600 -14.24082 -13.87134 -13.76250 -13.49179 -13.37803 -12.89448 -12.64620 -12.25462 -11.98921 -11.75680 -11.49024 -11.44207 -11.15338 -11.07192 -10.92332 -10.37608 -10.19703 -9.48706 -9.22476 -8.87626 -8.43140 -8.03469 -7.93445 -6.39466 -3.80274 0.89777 0.94167 3.19705 3.27984 3.31296 3.34232 3.93615 4.04567 4.09407 4.28183 4.48791 4.60409 4.79613 4.93404 5.05070 5.11567 5.23513 5.25410 5.30715 5.52110 5.68213 5.71374 5.82339 5.85979 5.93403 6.00266 6.06122 6.10867 6.22961 6.29939 6.64419 7.23486 7.57418 7.69161 8.08827 8.63874 9.20162 9.56881 10.08475 10.78415 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.049546 B = 0.002849 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.990644 B = 9824.013887 C = 9874.841076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.442 3.558 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.669 5.669 14 C 0.066 3.934 15 C -0.080 4.080 16 C -0.109 4.109 17 C -0.087 4.087 18 C -0.130 4.130 19 C -0.099 4.099 20 C -0.155 4.155 21 C 0.099 3.901 22 F -0.137 7.137 23 H 0.271 0.729 24 H 0.392 0.608 25 H 0.086 0.914 26 H 0.043 0.957 27 H 0.350 0.650 28 H 0.072 0.928 29 H 0.027 0.973 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.168 -22.838 -0.269 22.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.227 3.773 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.301 5.301 14 C -0.064 4.064 15 C -0.118 4.118 16 C -0.110 4.110 17 C -0.105 4.105 18 C -0.148 4.148 19 C -0.117 4.117 20 C -0.173 4.173 21 C 0.080 3.920 22 F -0.115 7.115 23 H 0.081 0.919 24 H 0.226 0.774 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.169 0.831 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.152 0.848 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.390 -22.612 -0.894 22.672 hybrid contribution -0.674 0.894 1.138 1.596 sum -2.064 -21.718 0.243 21.817 Atomic orbital electron populations 1.69614 1.05944 1.28135 1.50710 1.25264 0.95640 0.99727 0.97367 0.85852 0.79215 0.80786 0.78396 1.20387 1.20948 1.19420 1.19710 0.93381 0.82242 1.47506 0.87916 1.41864 1.09209 1.04599 1.64433 1.19810 0.88381 0.84720 0.84388 1.90520 1.13761 1.87084 1.55367 1.21669 0.94373 0.90923 1.01241 1.60066 1.18899 0.99857 1.51320 1.21893 0.95256 0.88591 1.00640 1.20530 0.97598 0.89256 1.04375 1.20009 1.00719 0.98023 0.92275 1.21049 0.97901 0.94308 0.97254 1.21225 0.98831 0.96286 0.98455 1.20996 0.99136 0.99726 0.91849 1.21154 1.01615 0.94504 1.00076 1.17637 1.00748 0.91851 0.81779 1.91508 1.93816 1.79026 1.47167 0.91889 0.77448 0.89590 0.93852 0.83124 0.90921 0.95439 0.90561 0.89245 0.84764 0.85360 0.85210 0.84892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.92 13.05 55.50 0.72 -24.19 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 8 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 9 N -0.56 -14.66 5.29 -10.96 -0.06 -14.71 16 10 C 0.44 10.75 7.82 -10.99 -0.09 10.66 16 11 O -0.58 -16.24 15.78 5.54 0.09 -16.15 16 12 C 0.05 0.94 6.17 -4.98 -0.03 0.91 16 13 N -0.67 -11.39 6.12 -115.06 -0.70 -12.09 16 14 C 0.07 0.88 5.67 -3.83 -0.02 0.86 16 15 C -0.08 -0.93 5.33 -27.88 -0.15 -1.08 16 16 C -0.11 -1.16 5.14 -104.55 -0.54 -1.70 16 17 C -0.09 -0.77 9.67 -39.59 -0.38 -1.15 16 18 C -0.13 -0.97 10.04 -39.58 -0.40 -1.37 16 19 C -0.10 -0.73 10.04 -39.59 -0.40 -1.13 16 20 C -0.15 -1.38 10.03 -39.52 -0.40 -1.78 16 21 C 0.10 1.10 7.24 -39.42 -0.29 0.81 16 22 F -0.14 -1.72 16.66 2.25 0.04 -1.69 16 23 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 24 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 25 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.35 6.13 8.43 -39.29 -0.33 5.80 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.91 7.94 -51.93 -0.41 0.50 16 31 H 0.09 1.01 8.01 -51.93 -0.42 0.59 16 32 H 0.13 0.99 8.04 -52.49 -0.42 0.56 16 33 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 35 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 312.62 15.07 4.71 4.71 Total: -1.00 -31.95 312.62 -7.52 -39.47 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -4.37 Total: 11.47 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -2.92 Total: -3.12 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.04 Total: -51.00 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: 0.09 Total: -16.15 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.95 -7.52 -39.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020047678.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.448 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds