Wall clock time and date at job start Mon Mar 30 2020 04:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 119.99757 * 2 1 4 4 H 1.48500 * 109.47535 * 270.00153 * 3 2 1 5 5 H 1.48504 * 109.47173 * 30.00524 * 3 2 1 6 6 H 1.48508 * 109.47149 * 150.00362 * 3 2 1 7 7 C 1.38943 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00340 * 179.97438 * 7 2 1 9 9 N 1.37104 * 119.99929 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99788 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00142 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99950 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47550 * 179.97438 * 12 10 9 14 14 C 1.46894 * 111.00559 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47515 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 13 17 17 C 1.38224 * 120.01147 * 99.99850 * 16 15 14 18 18 C 1.38218 * 120.02596 * 179.97438 * 17 16 15 19 19 C 1.38270 * 120.05109 * 0.02732 * 18 17 16 20 20 C 1.38170 * 120.02397 * 359.97438 * 19 18 17 21 21 C 1.38432 * 120.01370 * 279.72550 * 16 15 14 22 22 F 1.35102 * 120.02704 * 359.97438 * 21 16 15 23 23 H 0.96996 * 120.00021 * 359.97438 * 1 2 3 24 24 H 0.96992 * 120.00196 * 0.02562 * 9 7 2 25 25 H 1.09003 * 109.46949 * 59.99738 * 12 10 9 26 26 H 1.09005 * 109.47134 * 299.99717 * 12 10 9 27 27 H 1.00899 * 110.99900 * 56.04064 * 13 12 10 28 28 H 1.09002 * 109.47104 * 59.99767 * 14 13 12 29 29 H 1.08998 * 109.46828 * 300.00600 * 14 13 12 30 30 H 1.09002 * 109.47153 * 59.99762 * 15 14 13 31 31 H 1.09001 * 109.46832 * 299.99953 * 15 14 13 32 32 H 1.08002 * 119.98697 * 359.97438 * 17 16 15 33 33 H 1.07999 * 119.97411 * 180.02562 * 18 17 16 34 34 H 1.07995 * 119.98601 * 179.97438 * 19 18 17 35 35 H 1.08004 * 120.01264 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6527 0.7002 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1985 -5.9795 -0.0016 14 6 1.4983 -7.2708 -0.0028 15 6 2.5232 -8.4068 -0.0027 16 6 1.8048 -9.7315 -0.0032 17 6 1.6584 -10.4381 -1.1822 18 6 1.0000 -11.6534 -1.1830 19 6 0.4866 -12.1635 -0.0048 20 6 0.6318 -11.4590 1.1749 21 6 1.2962 -10.2440 1.1779 22 9 1.4440 -9.5571 2.3319 23 1 -0.4850 0.8400 0.0004 24 1 0.3535 -2.3907 -0.0005 25 1 0.6175 -4.9204 -0.8914 26 1 0.6169 -4.9209 0.8887 27 1 2.8334 -5.9127 0.7797 28 1 0.8737 -7.3446 -0.8931 29 1 0.8730 -7.3458 0.8868 30 1 3.1475 -8.3328 0.8878 31 1 3.1487 -8.3318 -0.8922 32 1 2.0586 -10.0404 -2.1031 33 1 0.8864 -12.2049 -2.1046 34 1 -0.0280 -13.1130 -0.0067 35 1 0.2303 -11.8575 2.0950 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020047678.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:33 Heat of formation + Delta-G solvation = -86.537924 kcal Electronic energy + Delta-G solvation = -18775.655909 eV Core-core repulsion = 15493.624926 eV Total energy + Delta-G solvation = -3282.030983 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.89679 -40.25085 -39.96445 -37.24690 -35.92587 -33.89268 -33.25144 -31.45338 -29.99763 -27.70691 -25.80614 -23.74070 -23.61885 -22.08457 -21.08872 -19.92989 -18.49656 -17.88680 -17.51946 -16.97951 -16.82867 -16.52844 -16.46625 -15.93810 -15.37338 -15.27952 -15.00183 -14.90188 -14.23505 -13.98101 -13.77814 -13.56656 -13.47042 -13.16921 -12.90588 -12.62557 -12.53235 -12.42785 -12.12456 -12.01780 -11.83067 -11.52304 -10.39975 -10.03773 -9.88510 -9.58394 -9.41552 -8.48043 -5.97291 0.20922 0.28959 1.37606 1.41318 1.54453 2.02193 2.28207 2.63999 2.89552 3.18846 3.34314 3.45338 3.80374 3.85363 4.10244 4.13088 4.23140 4.30767 4.42164 4.44345 4.47731 4.54273 4.59920 4.88878 4.95624 5.07045 5.16962 5.28090 5.39549 5.46237 5.51816 5.83720 5.99088 6.05549 6.31629 6.57931 7.10458 7.53412 8.08543 8.69512 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.049546 B = 0.002849 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.990644 B = 9824.013887 C = 9874.841076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.995 3.005 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.572 5.572 10 C 0.438 3.562 11 O -0.623 6.623 12 C 0.064 3.936 13 N -0.680 5.680 14 C 0.072 3.928 15 C -0.073 4.073 16 C -0.124 4.124 17 C -0.093 4.093 18 C -0.125 4.125 19 C -0.094 4.094 20 C -0.161 4.161 21 C 0.070 3.930 22 F -0.154 7.154 23 H 0.278 0.722 24 H 0.397 0.603 25 H 0.106 0.894 26 H 0.063 0.937 27 H 0.344 0.656 28 H 0.082 0.918 29 H 0.026 0.974 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.148 0.852 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.142 -24.113 -1.103 24.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.465 4.465 8 H 0.097 0.903 9 N -0.209 5.209 10 C 0.225 3.775 11 O -0.509 6.509 12 C -0.068 4.068 13 N -0.313 5.313 14 C -0.057 4.057 15 C -0.110 4.110 16 C -0.126 4.126 17 C -0.111 4.111 18 C -0.143 4.143 19 C -0.112 4.112 20 C -0.179 4.179 21 C 0.051 3.949 22 F -0.133 7.133 23 H 0.088 0.912 24 H 0.231 0.769 25 H 0.124 0.876 26 H 0.081 0.919 27 H 0.162 0.838 28 H 0.100 0.900 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.165 0.835 33 H 0.175 0.825 34 H 0.179 0.821 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.397 -23.910 -1.732 24.092 hybrid contribution -0.398 1.179 1.370 1.851 sum -2.795 -22.730 -0.362 22.904 Atomic orbital electron populations 1.69674 1.06878 1.29386 1.50218 1.26073 0.96575 1.02496 0.96158 0.84905 0.77860 0.76702 0.78727 1.19519 1.19440 1.19750 1.19686 0.92742 0.83999 1.50060 0.90281 1.41930 1.09356 1.04711 1.64948 1.20815 0.88240 0.86112 0.82318 1.90487 1.15809 1.87950 1.56700 1.21544 0.94050 0.88185 1.03067 1.60097 1.19076 1.00852 1.51229 1.21921 0.95570 0.87282 1.00918 1.20406 0.97149 0.89527 1.03961 1.19974 1.01710 0.97837 0.93071 1.21291 0.97972 0.94839 0.96995 1.21613 0.97355 0.95637 0.99710 1.21410 0.98237 1.00472 0.91061 1.21423 1.01174 0.93823 1.01505 1.17990 1.02473 0.93016 0.81452 1.91457 1.94161 1.79581 1.48097 0.91224 0.76941 0.87571 0.91899 0.83812 0.89960 0.95587 0.91639 0.88988 0.83465 0.82477 0.82147 0.83614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.38 13.05 21.66 0.28 -50.10 16 2 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16 3 Si 0.99 43.46 29.55 68.60 2.03 45.49 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.34 -19.45 9.68 84.04 0.81 -18.64 16 8 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 9 N -0.57 -30.21 5.29 -306.98 -1.62 -31.83 16 10 C 0.44 21.61 7.82 87.66 0.69 22.30 16 11 O -0.62 -35.63 15.78 -3.08 -0.05 -35.68 16 12 C 0.06 2.33 6.17 85.56 0.53 2.85 16 13 N -0.68 -23.02 6.12 -517.94 -3.17 -26.19 16 14 C 0.07 1.89 5.67 86.30 0.49 2.38 16 15 C -0.07 -1.69 5.33 29.85 0.16 -1.53 16 16 C -0.12 -2.57 5.14 -19.82 -0.10 -2.67 16 17 C -0.09 -1.46 9.67 22.26 0.22 -1.24 16 18 C -0.13 -1.48 10.04 22.27 0.22 -1.26 16 19 C -0.09 -1.11 10.04 22.26 0.22 -0.88 16 20 C -0.16 -2.62 10.03 22.31 0.22 -2.39 16 21 C 0.07 1.52 7.24 22.37 0.16 1.68 16 22 F -0.15 -3.99 16.66 44.97 0.75 -3.24 16 23 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 24 H 0.40 19.84 7.90 -92.71 -0.73 19.10 16 25 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 26 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 27 H 0.34 12.27 8.43 -89.70 -0.76 11.51 16 28 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 1.63 7.94 -2.39 -0.02 1.61 16 31 H 0.09 2.04 8.01 -2.39 -0.02 2.02 16 32 H 0.15 1.84 8.04 -2.91 -0.02 1.82 16 33 H 0.16 0.94 8.06 -2.91 -0.02 0.91 16 34 H 0.16 0.88 8.06 -2.91 -0.02 0.85 16 35 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -69.40 312.62 1.94 -67.46 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: -0.37 Total: 33.74 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 4.09 Total: 0.34 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -4.51 Total: -108.12 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -0.05 Total: -35.68 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.75 Total: -3.24 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -69.40 1.94 -67.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020047678.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.073 kcal (2) G-P(sol) polarization free energy of solvation -69.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds