Wall clock time and date at job start Mon Mar 30 2020 04:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99971 * 2 1 4 4 H 1.48508 * 109.47162 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47108 * 299.99455 * 3 2 1 6 6 H 1.48499 * 109.47506 * 59.99533 * 3 2 1 7 7 C 1.37873 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00370 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99840 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47176 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00269 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99533 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00196 * 180.02562 * 11 10 9 14 14 N 1.46905 * 109.47066 * 180.02562 * 13 11 10 15 15 C 1.46901 * 110.99870 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.46943 * 180.02562 * 15 14 13 17 17 C 1.38244 * 119.97057 * 269.72554 * 16 15 14 18 18 C 1.38201 * 120.02734 * 179.72907 * 17 16 15 19 19 C 1.38467 * 119.97127 * 0.56588 * 18 17 16 20 20 F 1.35093 * 120.02768 * 179.68310 * 19 18 17 21 21 C 1.38461 * 119.94700 * 359.70458 * 19 18 17 22 22 C 1.38199 * 119.97303 * 0.02562 * 21 19 18 23 23 H 0.97002 * 119.99740 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47008 * 60.00088 * 9 7 2 25 25 H 1.08998 * 109.47003 * 299.99928 * 9 7 2 26 26 H 0.97009 * 120.00102 * 0.02562 * 10 9 7 27 27 H 1.09001 * 109.47558 * 60.00201 * 13 11 10 28 28 H 1.08998 * 109.47216 * 299.99863 * 13 11 10 29 29 H 1.00901 * 110.99869 * 56.04737 * 14 13 11 30 30 H 1.09004 * 109.47031 * 299.99620 * 15 14 13 31 31 H 1.08995 * 109.47111 * 59.99900 * 15 14 13 32 32 H 1.08004 * 119.98873 * 359.97348 * 17 16 15 33 33 H 1.07994 * 120.01993 * 180.25253 * 18 17 16 34 34 H 1.08000 * 120.01421 * 179.97438 * 21 19 18 35 35 H 1.08003 * 119.98640 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5614 -5.1049 0.0020 13 6 2.7331 -6.0288 0.0016 14 7 1.9985 -7.3010 0.0015 15 6 2.9230 -8.4426 0.0027 16 6 2.1350 -9.7271 0.0019 17 6 1.7773 -10.3187 1.1991 18 6 1.0498 -11.4937 1.1998 19 6 0.6892 -12.0847 0.0006 20 9 -0.0165 -13.2367 0.0000 21 6 1.0528 -11.4942 -1.1978 22 6 1.7755 -10.3163 -1.1959 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 3.1568 -3.4355 0.0009 27 1 3.3597 -5.9707 0.8916 28 1 3.3598 -5.9715 -0.8883 29 1 1.3624 -7.3512 -0.7801 30 1 3.5517 -8.4020 -0.8869 31 1 3.5503 -8.4013 0.8931 32 1 2.0632 -9.8603 2.1343 33 1 0.7670 -11.9535 2.1351 34 1 0.7724 -11.9545 -2.1338 35 1 2.0589 -9.8553 -2.1306 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020052323.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:10 Heat of formation + Delta-G solvation = -63.482276 kcal Electronic energy + Delta-G solvation = -18467.870247 eV Core-core repulsion = 15186.839032 eV Total energy + Delta-G solvation = -3281.031215 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.10249 -39.52095 -38.77071 -35.69228 -34.13248 -32.34504 -31.38286 -31.37404 -28.12732 -26.41737 -24.16723 -23.29628 -22.26662 -21.50846 -19.70949 -17.93217 -17.39083 -16.69237 -16.13834 -15.82727 -15.63430 -15.49991 -15.17955 -14.56562 -14.28509 -14.12575 -13.95082 -13.75626 -13.42485 -12.94135 -12.47667 -12.24368 -12.19837 -11.92507 -11.65674 -11.47123 -11.21849 -10.96447 -10.90951 -10.33252 -9.39223 -9.34572 -9.08006 -8.89189 -8.75082 -8.41574 -7.88185 -6.17852 -4.24852 0.86895 1.00185 3.22375 3.26524 3.29678 3.32477 3.36998 3.89505 4.03134 4.30740 4.43316 4.50937 4.59249 4.67033 4.94685 5.01775 5.18276 5.27768 5.35129 5.39367 5.46837 5.59930 5.66903 5.76624 5.87562 5.98490 6.28755 6.63304 6.80862 7.28277 7.32731 7.43559 7.51248 7.66167 7.96089 8.62097 8.77630 9.10407 9.42008 10.92408 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.056601 B = 0.002600 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.573931 B =10768.048860 C =10945.054040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.714 5.714 11 C 0.496 3.504 12 O -0.543 6.543 13 C 0.040 3.960 14 N -0.668 5.668 15 C 0.098 3.902 16 C -0.090 4.090 17 C -0.066 4.066 18 C -0.155 4.155 19 C 0.095 3.905 20 F -0.143 7.143 21 C -0.155 4.155 22 C -0.084 4.084 23 H 0.265 0.735 24 H 0.026 0.974 25 H 0.027 0.973 26 H 0.390 0.610 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.353 0.647 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.015 -21.325 -0.807 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.363 5.363 11 C 0.279 3.721 12 O -0.421 6.421 13 C -0.093 4.093 14 N -0.301 5.301 15 C -0.030 4.030 16 C -0.090 4.090 17 C -0.085 4.085 18 C -0.174 4.174 19 C 0.075 3.925 20 F -0.121 7.121 21 C -0.173 4.173 22 C -0.103 4.103 23 H 0.075 0.925 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.222 0.778 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.172 0.828 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.865 -21.362 -0.128 22.439 hybrid contribution 1.003 0.862 -0.903 1.602 sum 7.868 -20.500 -1.031 21.983 Atomic orbital electron populations 1.69988 1.06114 1.27205 1.48952 1.24963 0.94920 0.99489 0.94723 0.86360 0.79800 0.82963 0.77764 1.19647 1.20804 1.20781 1.21264 0.93282 0.90455 1.53112 0.91855 1.19100 0.88305 0.81933 0.97734 1.46447 1.11092 1.06101 1.72710 1.20334 0.89533 0.84242 0.77950 1.90676 1.16673 1.84687 1.50045 1.21863 0.95722 0.89307 1.02389 1.60145 1.18597 0.99555 1.51757 1.20899 0.93229 0.87239 1.01659 1.19848 0.99714 0.96411 0.93072 1.20942 0.95574 0.93535 0.98417 1.21173 1.01462 0.97621 0.97114 1.17755 0.95876 0.84024 0.94822 1.91492 1.76333 1.46850 1.97461 1.21103 1.01565 0.97548 0.97126 1.20944 0.96769 0.94409 0.98144 0.92484 0.95609 0.95505 0.77775 0.88432 0.92716 0.82751 0.94116 0.89782 0.84680 0.84731 0.84808 0.85140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.59 5.43 -5.19 -0.03 6.56 16 10 N -0.71 -14.66 5.55 -61.47 -0.34 -15.00 16 11 C 0.50 9.60 7.87 -10.99 -0.09 9.51 16 12 O -0.54 -12.98 16.20 5.56 0.09 -12.89 16 13 C 0.04 0.52 6.17 -4.97 -0.03 0.49 16 14 N -0.67 -8.64 6.11 -116.34 -0.71 -9.35 16 15 C 0.10 0.92 5.81 -4.98 -0.03 0.89 16 16 C -0.09 -0.87 5.39 -104.62 -0.56 -1.43 16 17 C -0.07 -0.63 9.70 -39.59 -0.38 -1.01 16 18 C -0.15 -1.47 10.03 -39.51 -0.40 -1.87 16 19 C 0.09 0.97 7.30 -39.41 -0.29 0.69 16 20 F -0.14 -1.57 17.27 2.25 0.04 -1.53 16 21 C -0.15 -1.43 10.03 -39.51 -0.40 -1.83 16 22 C -0.08 -0.75 9.70 -39.59 -0.38 -1.14 16 23 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.39 6.73 8.32 -40.82 -0.34 6.39 16 27 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.35 4.87 8.43 -39.29 -0.33 4.54 16 30 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 31 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 32 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 33 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 315.05 15.07 4.75 4.75 Total: -1.00 -32.64 315.05 -7.89 -40.53 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -4.43 Total: 5.56 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -3.00 Total: -2.43 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.32 Total: -49.67 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.09 Total: -12.89 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.64 -7.89 -40.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020052323.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.953 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds