Wall clock time and date at job start Mon Mar 30 2020 04:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99971 * 2 1 4 4 H 1.48508 * 109.47162 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47108 * 299.99455 * 3 2 1 6 6 H 1.48499 * 109.47506 * 59.99533 * 3 2 1 7 7 C 1.37873 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00370 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99840 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47176 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00269 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99533 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00196 * 180.02562 * 11 10 9 14 14 N 1.46905 * 109.47066 * 180.02562 * 13 11 10 15 15 C 1.46901 * 110.99870 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.46943 * 180.02562 * 15 14 13 17 17 C 1.38244 * 119.97057 * 269.72554 * 16 15 14 18 18 C 1.38201 * 120.02734 * 179.72907 * 17 16 15 19 19 C 1.38467 * 119.97127 * 0.56588 * 18 17 16 20 20 F 1.35093 * 120.02768 * 179.68310 * 19 18 17 21 21 C 1.38461 * 119.94700 * 359.70458 * 19 18 17 22 22 C 1.38199 * 119.97303 * 0.02562 * 21 19 18 23 23 H 0.97002 * 119.99740 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47008 * 60.00088 * 9 7 2 25 25 H 1.08998 * 109.47003 * 299.99928 * 9 7 2 26 26 H 0.97009 * 120.00102 * 0.02562 * 10 9 7 27 27 H 1.09001 * 109.47558 * 60.00201 * 13 11 10 28 28 H 1.08998 * 109.47216 * 299.99863 * 13 11 10 29 29 H 1.00901 * 110.99869 * 56.04737 * 14 13 11 30 30 H 1.09004 * 109.47031 * 299.99620 * 15 14 13 31 31 H 1.08995 * 109.47111 * 59.99900 * 15 14 13 32 32 H 1.08004 * 119.98873 * 359.97348 * 17 16 15 33 33 H 1.07994 * 120.01993 * 180.25253 * 18 17 16 34 34 H 1.08000 * 120.01421 * 179.97438 * 21 19 18 35 35 H 1.08003 * 119.98640 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5614 -5.1049 0.0020 13 6 2.7331 -6.0288 0.0016 14 7 1.9985 -7.3010 0.0015 15 6 2.9230 -8.4426 0.0027 16 6 2.1350 -9.7271 0.0019 17 6 1.7773 -10.3187 1.1991 18 6 1.0498 -11.4937 1.1998 19 6 0.6892 -12.0847 0.0006 20 9 -0.0165 -13.2367 0.0000 21 6 1.0528 -11.4942 -1.1978 22 6 1.7755 -10.3163 -1.1959 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 3.1568 -3.4355 0.0009 27 1 3.3597 -5.9707 0.8916 28 1 3.3598 -5.9715 -0.8883 29 1 1.3624 -7.3512 -0.7801 30 1 3.5517 -8.4020 -0.8869 31 1 3.5503 -8.4013 0.8931 32 1 2.0632 -9.8603 2.1343 33 1 0.7670 -11.9535 2.1351 34 1 0.7724 -11.9545 -2.1338 35 1 2.0589 -9.8553 -2.1306 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020052323.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:10 Heat of formation + Delta-G solvation = -87.217980 kcal Electronic energy + Delta-G solvation = -18468.899504 eV Core-core repulsion = 15186.839032 eV Total energy + Delta-G solvation = -3282.060473 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.90202 -40.56477 -40.03139 -36.73026 -35.99366 -34.32446 -32.26221 -32.06550 -29.79194 -27.76480 -25.34124 -24.07022 -23.95219 -22.24247 -21.35422 -19.07094 -18.62286 -17.76892 -17.41969 -17.13309 -16.77956 -16.60877 -16.47974 -15.96128 -15.52228 -15.19221 -15.01626 -14.51780 -14.44910 -14.31045 -14.05583 -13.85353 -13.32629 -13.03795 -12.86451 -12.82784 -12.68567 -12.37322 -12.20992 -11.89957 -11.44491 -10.80764 -10.71423 -10.03879 -9.80537 -9.64949 -9.30270 -8.28458 -6.44944 0.12953 0.30963 1.44133 1.45185 1.58620 1.83021 2.29755 2.46028 2.70282 3.06674 3.30782 3.46791 3.78596 3.83257 3.99109 4.02795 4.27355 4.36095 4.43200 4.51166 4.68204 4.72898 5.01132 5.06555 5.13157 5.17866 5.25932 5.27984 5.50915 5.58220 5.70426 5.86399 5.91032 5.99762 6.31402 6.67288 6.97611 7.25015 7.56076 8.84034 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.056601 B = 0.002600 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.573931 B =10768.048860 C =10945.054040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.985 3.015 4 H -0.251 1.251 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.553 4.553 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.709 5.709 11 C 0.490 3.510 12 O -0.595 6.595 13 C 0.058 3.942 14 N -0.689 5.689 15 C 0.103 3.897 16 C -0.099 4.099 17 C -0.075 4.075 18 C -0.162 4.162 19 C 0.074 3.926 20 F -0.151 7.151 21 C -0.160 4.160 22 C -0.086 4.086 23 H 0.268 0.732 24 H -0.014 1.014 25 H -0.016 1.016 26 H 0.409 0.591 27 H 0.125 0.875 28 H 0.090 0.910 29 H 0.345 0.655 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.907 -21.240 -1.003 23.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.808 3.192 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.591 4.591 8 H 0.104 0.896 9 C 0.143 3.857 10 N -0.360 5.360 11 C 0.277 3.723 12 O -0.476 6.476 13 C -0.074 4.074 14 N -0.321 5.321 15 C -0.025 4.025 16 C -0.099 4.099 17 C -0.093 4.093 18 C -0.181 4.181 19 C 0.055 3.945 20 F -0.130 7.130 21 C -0.179 4.179 22 C -0.105 4.105 23 H 0.077 0.923 24 H 0.004 0.996 25 H 0.002 0.998 26 H 0.245 0.755 27 H 0.143 0.857 28 H 0.107 0.893 29 H 0.163 0.837 30 H 0.081 0.919 31 H 0.116 0.884 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.166 0.834 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.822 -21.317 -0.321 23.473 hybrid contribution 0.055 0.748 -0.841 1.127 sum 9.877 -20.569 -1.162 22.847 Atomic orbital electron populations 1.70153 1.08334 1.28467 1.50180 1.26091 0.95771 1.04006 0.93951 0.85104 0.79159 0.77299 0.77601 1.17457 1.20536 1.20588 1.21667 0.94366 0.90534 1.52545 0.89635 1.18512 0.88765 0.84508 0.93914 1.46174 1.11174 1.05524 1.73101 1.21535 0.90025 0.85027 0.75677 1.90653 1.19561 1.85426 1.51955 1.21779 0.93866 0.86523 1.05242 1.60139 1.19748 1.00400 1.51828 1.20957 0.92692 0.85433 1.03372 1.20020 0.99910 0.96687 0.93308 1.21158 0.95525 0.93546 0.99078 1.21373 1.01389 0.97797 0.97498 1.18035 0.96615 0.84198 0.95688 1.91465 1.76655 1.47360 1.97538 1.21343 1.01351 0.97734 0.97444 1.21200 0.96253 0.94160 0.98872 0.92303 0.99611 0.99756 0.75481 0.85668 0.89255 0.83676 0.91942 0.88357 0.83588 0.83563 0.83397 0.83251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.31 13.29 21.45 0.28 -56.03 16 2 C 0.00 0.06 5.46 84.65 0.46 0.53 16 3 Si 0.99 41.91 29.54 68.60 2.03 43.93 16 4 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 5 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.55 -29.73 9.28 25.60 0.24 -29.49 16 8 H 0.09 4.11 7.60 -2.91 -0.02 4.09 16 9 C 0.27 14.51 5.43 85.64 0.46 14.97 16 10 N -0.71 -28.82 5.55 -466.78 -2.59 -31.41 16 11 C 0.49 18.71 7.87 87.66 0.69 19.40 16 12 O -0.59 -29.22 16.20 -3.04 -0.05 -29.27 16 13 C 0.06 1.34 6.17 85.55 0.53 1.87 16 14 N -0.69 -16.25 6.11 -521.98 -3.19 -19.44 16 15 C 0.10 1.60 5.81 85.56 0.50 2.09 16 16 C -0.10 -1.70 5.39 -19.86 -0.11 -1.81 16 17 C -0.07 -1.31 9.70 22.26 0.22 -1.09 16 18 C -0.16 -2.96 10.03 22.32 0.22 -2.74 16 19 C 0.07 1.49 7.30 22.38 0.16 1.65 16 20 F -0.15 -3.32 17.27 44.97 0.78 -2.55 16 21 C -0.16 -2.80 10.03 22.31 0.22 -2.57 16 22 C -0.09 -1.39 9.70 22.26 0.22 -1.18 16 23 H 0.27 15.08 8.31 -92.71 -0.77 14.30 16 24 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 25 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 26 H 0.41 13.29 8.32 -92.70 -0.77 12.52 16 27 H 0.13 2.30 8.14 -2.39 -0.02 2.29 16 28 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.34 9.06 8.43 -89.69 -0.76 8.30 16 30 H 0.06 0.73 8.08 -2.39 -0.02 0.71 16 31 H 0.10 1.26 8.08 -2.39 -0.02 1.24 16 32 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 33 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 35 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -73.79 315.05 0.66 -73.13 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -0.41 Total: 20.00 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 3.81 Total: 1.63 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -5.50 Total: -106.88 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.05 Total: -29.27 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.78 Total: -2.55 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Total: -73.79 0.66 -73.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020052323.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.088 kcal (2) G-P(sol) polarization free energy of solvation -73.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds