Wall clock time and date at job start Mon Mar 30 2020 04:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99796 * 2 1 4 4 H 1.48490 * 109.47234 * 270.00325 * 3 2 1 5 5 H 1.48506 * 109.46931 * 30.00512 * 3 2 1 6 6 H 1.48502 * 109.47111 * 150.00338 * 3 2 1 7 7 C 1.37882 * 120.00371 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99637 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99756 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.46716 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99912 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99912 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00236 * 180.02562 * 11 10 9 14 14 N 1.46902 * 109.47248 * 180.02562 * 13 11 10 15 15 C 1.46897 * 111.00118 * 180.02562 * 14 13 11 16 16 C 1.50698 * 109.47421 * 179.97438 * 15 14 13 17 17 C 1.38219 * 120.00966 * 104.99560 * 16 15 14 18 18 C 1.38227 * 120.02402 * 179.72409 * 17 16 15 19 19 C 1.38263 * 120.05156 * 0.30685 * 18 17 16 20 20 C 1.38177 * 120.02526 * 359.97438 * 19 18 17 21 21 C 1.38439 * 120.01637 * 285.30265 * 16 15 14 22 22 F 1.35105 * 120.02463 * 359.97438 * 21 16 15 23 23 H 0.96993 * 120.00209 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46557 * 60.00118 * 9 7 2 25 25 H 1.09001 * 109.47265 * 300.00197 * 9 7 2 26 26 H 0.96998 * 120.00878 * 0.02562 * 10 9 7 27 27 H 1.08998 * 109.47432 * 60.00277 * 13 11 10 28 28 H 1.09001 * 109.47271 * 300.00378 * 13 11 10 29 29 H 1.00896 * 110.99939 * 56.04590 * 14 13 11 30 30 H 1.09012 * 109.47067 * 59.99837 * 15 14 13 31 31 H 1.08992 * 109.47414 * 299.99963 * 15 14 13 32 32 H 1.08002 * 119.99072 * 0.02562 * 17 16 15 33 33 H 1.07999 * 119.97012 * 180.27779 * 18 17 16 34 34 H 1.08004 * 119.99046 * 179.97438 * 19 18 17 35 35 H 1.08000 * 120.01271 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6125 -0.0018 11 6 1.7540 -4.8833 -0.0015 12 8 0.5616 -5.1050 -0.0006 13 6 2.7333 -6.0287 -0.0022 14 7 1.9989 -7.3009 -0.0023 15 6 2.9234 -8.4425 -0.0023 16 6 2.1355 -9.7271 -0.0018 17 6 2.0377 -10.4785 -1.1578 18 6 1.3198 -11.6598 -1.1561 19 6 0.6935 -12.0878 -0.0002 20 6 0.7851 -11.3353 1.1551 21 6 1.5041 -10.1518 1.1547 22 9 1.5943 -9.4152 2.2837 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5566 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 3.1569 -3.4353 -0.0021 27 1 3.3606 -5.9710 0.8874 28 1 3.3594 -5.9709 -0.8925 29 1 1.3622 -7.3508 -0.7834 30 1 3.5514 -8.4015 0.8878 31 1 3.5514 -8.4015 -0.8922 32 1 2.5264 -10.1451 -2.0613 33 1 1.2476 -12.2485 -2.0587 34 1 0.1325 -13.0107 -0.0001 35 1 0.2962 -11.6700 2.0580 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020053103.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:13 Heat of formation + Delta-G solvation = -86.551406 kcal Electronic energy + Delta-G solvation = -18829.250850 eV Core-core repulsion = 15547.219282 eV Total energy + Delta-G solvation = -3282.031568 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.77848 -40.57432 -39.93226 -36.88965 -36.04519 -34.35033 -32.67845 -31.37963 -29.88238 -27.94478 -25.50658 -24.09802 -23.66307 -22.31054 -21.40358 -19.12911 -18.46468 -17.73382 -17.41324 -17.20379 -16.79686 -16.62366 -16.48006 -16.08646 -15.46395 -15.19596 -15.06532 -14.72060 -14.19336 -14.15078 -13.88576 -13.87533 -13.43016 -13.06976 -12.96252 -12.90900 -12.69533 -12.32878 -12.23040 -11.87936 -11.49322 -10.80790 -10.76304 -9.95068 -9.83541 -9.58240 -9.40581 -8.29519 -6.46469 0.21717 0.29483 1.42812 1.45563 1.56813 1.77982 2.28171 2.46685 2.71189 3.05257 3.35456 3.42720 3.70341 3.84491 3.97145 4.13598 4.30885 4.36595 4.43113 4.44494 4.58906 4.62232 4.98829 5.10291 5.16442 5.23445 5.27167 5.40759 5.48383 5.49475 5.67382 5.84051 5.88295 6.01676 6.26545 6.64994 6.93553 7.23187 7.51687 8.82876 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.048781 B = 0.002919 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.851277 B = 9591.440770 C = 9656.703482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.986 3.014 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.267 3.733 10 N -0.708 5.708 11 C 0.491 3.509 12 O -0.594 6.594 13 C 0.058 3.942 14 N -0.690 5.690 15 C 0.105 3.895 16 C -0.137 4.137 17 C -0.087 4.087 18 C -0.132 4.132 19 C -0.089 4.089 20 C -0.172 4.172 21 C 0.090 3.910 22 F -0.151 7.151 23 H 0.269 0.731 24 H -0.013 1.013 25 H -0.017 1.017 26 H 0.409 0.591 27 H 0.119 0.881 28 H 0.093 0.907 29 H 0.346 0.654 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.152 0.848 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.601 -23.987 -3.000 26.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.144 3.856 10 N -0.359 5.359 11 C 0.279 3.721 12 O -0.475 6.475 13 C -0.073 4.073 14 N -0.323 5.323 15 C -0.023 4.023 16 C -0.138 4.138 17 C -0.106 4.106 18 C -0.150 4.150 19 C -0.107 4.107 20 C -0.190 4.190 21 C 0.070 3.930 22 F -0.130 7.130 23 H 0.078 0.922 24 H 0.005 0.995 25 H 0.001 0.999 26 H 0.245 0.755 27 H 0.137 0.863 28 H 0.111 0.889 29 H 0.165 0.835 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.170 0.830 33 H 0.176 0.824 34 H 0.177 0.823 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.542 -23.982 -2.264 25.558 hybrid contribution 0.359 1.341 -0.345 1.430 sum 8.901 -22.641 -2.609 24.467 Atomic orbital electron populations 1.70144 1.08354 1.28587 1.50010 1.26107 0.95786 1.04032 0.93852 0.85133 0.78462 0.76826 0.78643 1.19469 1.21034 1.17860 1.21632 0.94357 0.90526 1.52840 0.89664 1.18514 0.88738 0.84455 0.93908 1.46163 1.11205 1.05449 1.73055 1.21456 0.89949 0.85015 0.75724 1.90646 1.19504 1.85423 1.51942 1.21755 0.93959 0.86554 1.05058 1.60060 1.19852 1.00462 1.51917 1.20828 0.92884 0.85729 1.02879 1.20022 1.01984 0.98371 0.93463 1.21313 0.98036 0.94443 0.96764 1.21590 0.97256 0.96589 0.99539 1.21409 0.97977 0.99996 0.91334 1.21442 1.01471 0.94440 1.01676 1.18005 1.00537 0.91611 0.82813 1.91474 1.94655 1.76894 1.49956 0.92248 0.99508 0.99864 0.75485 0.86297 0.88928 0.83503 0.89976 0.91022 0.82986 0.82406 0.82296 0.84022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.09 13.29 21.45 0.28 -56.81 16 2 C 0.00 0.09 5.46 84.66 0.46 0.56 16 3 Si 0.99 42.59 29.54 68.60 2.03 44.62 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.56 -30.55 9.28 25.60 0.24 -30.32 16 8 H 0.09 4.20 7.60 -2.91 -0.02 4.18 16 9 C 0.27 14.96 5.43 85.63 0.46 15.43 16 10 N -0.71 -30.24 5.55 -466.80 -2.59 -32.83 16 11 C 0.49 20.09 7.87 87.66 0.69 20.78 16 12 O -0.59 -30.70 16.20 -3.04 -0.05 -30.75 16 13 C 0.06 1.57 6.17 85.56 0.53 2.10 16 14 N -0.69 -19.38 6.11 -521.99 -3.19 -22.57 16 15 C 0.10 2.15 5.50 85.56 0.47 2.62 16 16 C -0.14 -2.89 5.40 -19.82 -0.11 -2.99 16 17 C -0.09 -1.34 9.67 22.26 0.22 -1.12 16 18 C -0.13 -1.67 10.04 22.27 0.22 -1.44 16 19 C -0.09 -1.22 10.04 22.26 0.22 -1.00 16 20 C -0.17 -3.28 10.03 22.31 0.22 -3.06 16 21 C 0.09 2.20 7.25 22.37 0.16 2.37 16 22 F -0.15 -4.53 16.76 44.97 0.75 -3.78 16 23 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 24 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 25 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 26 H 0.41 14.11 8.32 -92.71 -0.77 13.34 16 27 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.35 10.31 8.42 -89.70 -0.76 9.55 16 30 H 0.08 1.69 8.09 -2.38 -0.02 1.68 16 31 H 0.07 1.06 7.95 -2.39 -0.02 1.04 16 32 H 0.15 1.57 8.00 -2.91 -0.02 1.54 16 33 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 34 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 35 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -77.33 314.33 0.62 -76.71 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -0.41 Total: 21.50 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 3.79 Total: 3.91 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -5.50 Total: -112.20 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.05 Total: -30.75 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.75 Total: -3.78 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -77.33 0.62 -76.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020053103.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.846 kcal (2) G-P(sol) polarization free energy of solvation -77.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds