Wall clock time and date at job start Mon Mar 30 2020 04:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 111.00266 * 2 1 4 4 C 1.50697 * 109.46998 * 293.94707 * 3 2 1 5 5 H 1.07996 * 119.99898 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99946 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99794 * 180.02562 * 6 4 3 8 8 Si 1.86795 * 120.00071 * 0.02562 * 6 4 3 9 9 H 1.48511 * 109.47025 * 90.00147 * 8 6 4 10 10 H 1.48503 * 109.47422 * 209.99916 * 8 6 4 11 11 H 1.48502 * 109.47296 * 330.00307 * 8 6 4 12 12 C 1.39675 * 110.99543 * 123.94949 * 2 1 3 13 13 C 1.38930 * 120.07593 * 296.07025 * 12 2 1 14 14 C 1.38092 * 119.92395 * 179.97438 * 13 12 2 15 15 C 1.38301 * 120.07364 * 359.97438 * 14 13 12 16 16 N 1.48010 * 119.92383 * 180.02562 * 15 14 13 17 17 O 1.21799 * 119.99893 * 359.97438 * 16 15 14 18 18 O 1.21801 * 119.99678 * 180.02562 * 16 15 14 19 19 C 1.38261 * 120.15167 * 359.74892 * 15 14 13 20 20 C 1.38120 * 120.07428 * 0.50799 * 19 15 14 21 21 C 1.50707 * 120.04152 * 179.76873 * 20 19 15 22 22 O 1.42903 * 109.46442 * 359.72392 * 21 20 19 23 23 H 1.08999 * 109.47601 * 296.05665 * 1 2 3 24 24 H 1.09011 * 109.46767 * 56.04790 * 1 2 3 25 25 H 1.08999 * 109.47711 * 176.04763 * 1 2 3 26 26 H 1.09001 * 109.47270 * 53.95073 * 3 2 1 27 27 H 1.09005 * 109.46931 * 173.95332 * 3 2 1 28 28 H 0.97001 * 119.99618 * 179.97438 * 7 6 4 29 29 H 1.08001 * 120.04093 * 359.97438 * 13 12 2 30 30 H 1.07997 * 119.96201 * 180.02562 * 14 13 12 31 31 H 1.08001 * 119.96371 * 180.27448 * 19 15 14 32 32 H 1.08999 * 109.47345 * 239.72463 * 21 20 19 33 33 H 1.08997 * 109.47199 * 119.72280 * 21 20 19 34 34 H 0.96700 * 114.00311 * 60.00230 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 -1.2985 5 1 1.0742 1.5114 -2.0485 6 6 2.0279 3.3490 -1.5290 7 7 1.7148 3.9387 -2.6620 8 14 3.0022 4.2752 -0.2320 9 1 4.4545 4.0615 -0.4574 10 1 2.6952 5.7252 -0.3239 11 1 2.6318 3.7752 1.1163 12 6 1.9694 -0.7282 1.0817 13 6 1.7256 -0.3011 2.3811 14 6 2.2214 -1.0238 3.4482 15 6 2.9595 -2.1719 3.2247 16 7 3.4889 -2.9442 4.3709 17 8 3.2747 -2.5683 5.5095 18 8 4.1395 -3.9552 4.1755 19 6 3.1992 -2.6029 1.9330 20 6 2.7107 -1.8819 0.8609 21 6 2.9768 -2.3495 -0.5469 22 8 3.7544 -3.5480 -0.5115 23 1 -0.3634 0.4514 0.9232 24 1 -0.3633 0.5740 -0.8526 25 1 -0.3634 -1.0252 -0.0708 26 1 1.5611 1.9274 0.8309 27 1 3.0798 1.3443 0.1083 28 1 1.9894 4.8548 -2.8240 29 1 1.1489 0.5950 2.5564 30 1 2.0319 -0.6926 4.4585 31 1 3.7722 -3.5022 1.7620 32 1 3.5232 -1.5777 -1.0890 33 1 2.0298 -2.5455 -1.0497 34 1 3.3287 -4.2794 -0.0436 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020468161.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:25 Heat of formation + Delta-G solvation = -16.214395 kcal Electronic energy + Delta-G solvation = -20071.336187 eV Core-core repulsion = 16779.981871 eV Total energy + Delta-G solvation = -3291.354316 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.18099 -40.28385 -37.16481 -36.56787 -36.40462 -32.84557 -31.82592 -30.91449 -28.27450 -26.83046 -26.40015 -24.57788 -22.80151 -21.70674 -20.66128 -19.19507 -18.67159 -17.53496 -17.40174 -17.10597 -16.18269 -15.87678 -15.13867 -14.75778 -14.47483 -14.18589 -13.88936 -13.55325 -13.01311 -12.92742 -12.55673 -12.20685 -11.80377 -11.58671 -11.53414 -11.39983 -11.22570 -11.15937 -10.87393 -10.79155 -10.47068 -10.20362 -9.61093 -9.36175 -9.03079 -8.80152 -8.09861 -6.27897 -4.28631 -0.16888 0.86538 1.33278 1.41340 3.12175 3.16334 3.19000 3.21891 4.05150 4.21001 4.23719 4.30131 4.40080 4.83401 4.87437 5.02263 5.10571 5.34537 5.47209 5.49933 5.60963 5.70688 5.73787 5.95044 6.08475 6.19582 6.30051 6.42948 6.47655 6.57510 7.23411 7.31201 7.47042 7.64823 7.65104 8.33863 8.77842 9.31101 10.84309 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022106 B = 0.005513 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.327992 B = 5078.143382 C = 5666.011158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.507 5.507 3 C 0.166 3.834 4 C -0.519 4.519 5 H 0.085 0.915 6 C 0.075 3.925 7 N -0.891 5.891 8 Si 0.871 3.129 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.173 3.827 13 C -0.152 4.152 14 C -0.048 4.048 15 C -0.059 4.059 16 N 0.035 4.965 17 O -0.172 6.172 18 O -0.167 6.167 19 C -0.048 4.048 20 C -0.110 4.110 21 C 0.132 3.868 22 O -0.566 6.566 23 H 0.024 0.976 24 H 0.095 0.905 25 H 0.054 0.946 26 H -0.001 1.001 27 H 0.028 0.972 28 H 0.267 0.733 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.157 0.843 32 H 0.121 0.879 33 H 0.075 0.925 34 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.886 -11.124 8.714 14.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.228 5.228 3 C 0.042 3.958 4 C -0.557 4.557 5 H 0.103 0.897 6 C -0.128 4.128 7 N -0.529 5.529 8 Si 0.698 3.302 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.193 1.193 12 C 0.077 3.923 13 C -0.173 4.173 14 C -0.067 4.067 15 C -0.143 4.143 16 N 0.553 4.447 17 O -0.386 6.386 18 O -0.382 6.382 19 C -0.067 4.067 20 C -0.113 4.113 21 C 0.054 3.946 22 O -0.371 6.371 23 H 0.042 0.958 24 H 0.114 0.886 25 H 0.073 0.927 26 H 0.017 0.983 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.164 0.836 30 H 0.167 0.833 31 H 0.175 0.825 32 H 0.138 0.862 33 H 0.093 0.907 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -0.567 -10.399 7.260 12.696 hybrid contribution 0.002 0.723 2.103 2.224 sum -0.565 -9.676 9.363 13.477 Atomic orbital electron populations 1.22365 0.85150 1.01000 1.02277 1.59898 1.08873 1.17717 1.36344 1.20346 0.95226 0.81745 0.98458 1.20870 1.36825 0.97442 1.00595 0.89673 1.24843 0.95470 0.97238 0.95246 1.69864 1.45945 1.13463 1.23593 0.86937 0.81132 0.79722 0.82432 1.19911 1.20812 1.19347 1.19478 0.90922 0.91740 0.90143 1.21926 1.01925 1.01201 0.92290 1.20895 0.93108 0.91278 1.01458 1.20985 1.09130 0.98097 0.86057 1.43614 0.98475 1.00283 1.02366 1.94517 1.62970 1.73206 1.07858 1.94517 1.37514 1.14314 1.91881 1.20696 0.96755 1.00479 0.88775 1.20698 0.98264 0.95081 0.97222 1.21115 0.96803 0.86545 0.90126 1.86610 1.48233 1.22696 1.79519 0.95772 0.88622 0.92715 0.98342 0.95428 0.92283 0.83626 0.83316 0.82528 0.86164 0.90684 0.77995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 9.20 60.06 0.55 1.14 16 2 N -0.51 -8.83 4.09 -180.33 -0.74 -9.56 16 3 C 0.17 3.52 3.37 -4.98 -0.02 3.51 16 4 C -0.52 -13.22 9.01 -34.44 -0.31 -13.53 16 5 H 0.09 2.35 7.37 -52.49 -0.39 1.96 16 6 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16 7 N -0.89 -25.46 13.96 55.43 0.77 -24.69 16 8 Si 0.87 19.99 27.47 -169.99 -4.67 15.32 16 9 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.27 -5.88 6.54 56.52 0.37 -5.51 16 12 C 0.17 2.60 4.66 -83.78 -0.39 2.21 16 13 C -0.15 -2.09 8.66 -39.38 -0.34 -2.44 16 14 C -0.05 -0.61 9.55 -39.61 -0.38 -0.99 16 15 C -0.06 -0.81 6.85 -79.92 -0.55 -1.36 16 16 N 0.04 0.52 4.45 33.98 0.15 0.68 16 17 O -0.17 -2.63 18.44 -29.46 -0.54 -3.17 16 18 O -0.17 -2.53 18.44 -29.46 -0.54 -3.07 16 19 C -0.05 -0.60 8.72 -39.62 -0.35 -0.95 16 20 C -0.11 -1.48 5.89 -104.42 -0.62 -2.10 16 21 C 0.13 1.68 6.86 36.01 0.25 1.93 16 22 O -0.57 -6.62 12.70 -35.23 -0.45 -7.07 16 23 H 0.02 0.35 7.34 -51.93 -0.38 -0.03 16 24 H 0.10 1.67 6.76 -51.92 -0.35 1.32 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.00 -0.02 6.54 -51.93 -0.34 -0.36 16 27 H 0.03 0.61 7.48 -51.93 -0.39 0.22 16 28 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.15 1.91 7.14 -52.49 -0.37 1.53 16 30 H 0.15 1.65 7.60 -52.49 -0.40 1.25 16 31 H 0.16 1.73 6.13 -52.49 -0.32 1.41 16 32 H 0.12 1.76 8.14 -51.93 -0.42 1.34 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.37 2.84 8.11 45.56 0.37 3.20 16 LS Contribution 295.75 15.07 4.46 4.46 Total: -1.00 -28.97 295.75 -6.81 -35.78 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -3.01 Total: 1.98 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -2.24 Total: -10.66 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.19 Total: -33.57 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -1.53 Total: -13.31 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.67 Total: 15.32 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.97 -6.81 -35.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020468161.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.567 kcal (2) G-P(sol) polarization free energy of solvation -28.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds