Wall clock time and date at job start Mon Mar 30 2020 04:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 111.00266 * 2 1 4 4 C 1.50697 * 109.46998 * 293.94707 * 3 2 1 5 5 H 1.07996 * 119.99898 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99946 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99794 * 180.02562 * 6 4 3 8 8 Si 1.86795 * 120.00071 * 0.02562 * 6 4 3 9 9 H 1.48511 * 109.47025 * 90.00147 * 8 6 4 10 10 H 1.48503 * 109.47422 * 209.99916 * 8 6 4 11 11 H 1.48502 * 109.47296 * 330.00307 * 8 6 4 12 12 C 1.39675 * 110.99543 * 123.94949 * 2 1 3 13 13 C 1.38930 * 120.07593 * 296.07025 * 12 2 1 14 14 C 1.38092 * 119.92395 * 179.97438 * 13 12 2 15 15 C 1.38301 * 120.07364 * 359.97438 * 14 13 12 16 16 N 1.48010 * 119.92383 * 180.02562 * 15 14 13 17 17 O 1.21799 * 119.99893 * 359.97438 * 16 15 14 18 18 O 1.21801 * 119.99678 * 180.02562 * 16 15 14 19 19 C 1.38261 * 120.15167 * 359.74892 * 15 14 13 20 20 C 1.38120 * 120.07428 * 0.50799 * 19 15 14 21 21 C 1.50707 * 120.04152 * 179.76873 * 20 19 15 22 22 O 1.42903 * 109.46442 * 359.72392 * 21 20 19 23 23 H 1.08999 * 109.47601 * 296.05665 * 1 2 3 24 24 H 1.09011 * 109.46767 * 56.04790 * 1 2 3 25 25 H 1.08999 * 109.47711 * 176.04763 * 1 2 3 26 26 H 1.09001 * 109.47270 * 53.95073 * 3 2 1 27 27 H 1.09005 * 109.46931 * 173.95332 * 3 2 1 28 28 H 0.97001 * 119.99618 * 179.97438 * 7 6 4 29 29 H 1.08001 * 120.04093 * 359.97438 * 13 12 2 30 30 H 1.07997 * 119.96201 * 180.02562 * 14 13 12 31 31 H 1.08001 * 119.96371 * 180.27448 * 19 15 14 32 32 H 1.08999 * 109.47345 * 239.72463 * 21 20 19 33 33 H 1.08997 * 109.47199 * 119.72280 * 21 20 19 34 34 H 0.96700 * 114.00311 * 60.00230 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 -1.2985 5 1 1.0742 1.5114 -2.0485 6 6 2.0279 3.3490 -1.5290 7 7 1.7148 3.9387 -2.6620 8 14 3.0022 4.2752 -0.2320 9 1 4.4545 4.0615 -0.4574 10 1 2.6952 5.7252 -0.3239 11 1 2.6318 3.7752 1.1163 12 6 1.9694 -0.7282 1.0817 13 6 1.7256 -0.3011 2.3811 14 6 2.2214 -1.0238 3.4482 15 6 2.9595 -2.1719 3.2247 16 7 3.4889 -2.9442 4.3709 17 8 3.2747 -2.5683 5.5095 18 8 4.1395 -3.9552 4.1755 19 6 3.1992 -2.6029 1.9330 20 6 2.7107 -1.8819 0.8609 21 6 2.9768 -2.3495 -0.5469 22 8 3.7544 -3.5480 -0.5115 23 1 -0.3634 0.4514 0.9232 24 1 -0.3633 0.5740 -0.8526 25 1 -0.3634 -1.0252 -0.0708 26 1 1.5611 1.9274 0.8309 27 1 3.0798 1.3443 0.1083 28 1 1.9894 4.8548 -2.8240 29 1 1.1489 0.5950 2.5564 30 1 2.0319 -0.6926 4.4585 31 1 3.7722 -3.5022 1.7620 32 1 3.5232 -1.5777 -1.0890 33 1 2.0298 -2.5455 -1.0497 34 1 3.3287 -4.2794 -0.0436 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020468161.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:25 Heat of formation + Delta-G solvation = -35.541002 kcal Electronic energy + Delta-G solvation = -20072.174251 eV Core-core repulsion = 16779.981871 eV Total energy + Delta-G solvation = -3292.192380 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.30653 -41.41958 -38.31956 -37.72752 -37.51003 -34.76420 -32.90155 -32.12949 -29.97929 -27.97912 -27.49610 -25.94288 -24.17081 -22.85729 -22.04591 -20.26254 -19.80437 -19.16405 -18.65783 -18.13957 -17.49106 -17.05549 -16.71445 -15.86390 -15.79956 -15.34768 -15.25892 -14.74607 -14.46243 -14.23009 -14.02179 -13.44090 -13.10078 -13.01660 -12.73186 -12.57555 -12.57064 -12.39285 -12.32469 -12.29399 -11.97448 -11.57004 -11.42470 -10.82834 -10.44862 -10.11837 -9.47479 -8.31999 -6.36269 -1.29889 -0.15847 0.19813 0.30908 1.32206 1.34206 1.41679 2.09316 2.29367 2.77364 3.02164 3.23825 3.33605 3.40775 3.80757 3.85722 4.03296 4.20711 4.45288 4.47064 4.50760 4.53449 4.60302 4.73021 4.79184 4.92589 5.03100 5.10645 5.18164 5.33700 5.43992 5.77240 6.12050 6.47824 6.50366 6.71297 6.74688 7.27058 8.83634 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022106 B = 0.005513 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.327992 B = 5078.143382 C = 5666.011158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.514 5.514 3 C 0.176 3.824 4 C -0.515 4.515 5 H 0.050 0.950 6 C 0.017 3.983 7 N -0.941 5.941 8 Si 0.933 3.067 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.247 1.247 12 C 0.155 3.845 13 C -0.151 4.151 14 C -0.039 4.039 15 C -0.064 4.064 16 N 0.035 4.965 17 O -0.181 6.181 18 O -0.172 6.172 19 C -0.038 4.038 20 C -0.107 4.107 21 C 0.139 3.861 22 O -0.573 6.573 23 H 0.037 0.963 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.006 0.994 27 H 0.024 0.976 28 H 0.267 0.733 29 H 0.154 0.846 30 H 0.168 0.832 31 H 0.174 0.826 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.470 -12.039 10.795 16.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.235 5.235 3 C 0.051 3.949 4 C -0.554 4.554 5 H 0.068 0.932 6 C -0.181 4.181 7 N -0.581 5.581 8 Si 0.757 3.243 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.170 1.170 12 C 0.060 3.940 13 C -0.171 4.171 14 C -0.059 4.059 15 C -0.148 4.148 16 N 0.551 4.449 17 O -0.394 6.394 18 O -0.387 6.387 19 C -0.057 4.057 20 C -0.109 4.109 21 C 0.061 3.939 22 O -0.381 6.381 23 H 0.055 0.945 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.024 0.976 27 H 0.042 0.958 28 H 0.077 0.923 29 H 0.171 0.829 30 H 0.186 0.814 31 H 0.191 0.809 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -0.162 -11.357 9.377 14.729 hybrid contribution -0.166 0.869 1.425 1.678 sum -0.328 -10.488 10.803 15.060 Atomic orbital electron populations 1.22352 0.84226 1.02372 1.01647 1.59667 1.09846 1.15742 1.38242 1.20049 0.95036 0.83778 0.96023 1.21119 1.35282 0.97363 1.01591 0.93184 1.25682 0.96769 0.98437 0.97237 1.70013 1.48142 1.13970 1.26006 0.85928 0.79455 0.78168 0.80719 1.19689 1.20864 1.17021 1.19490 0.92192 0.92391 0.89955 1.21942 1.01927 1.01513 0.91753 1.21050 0.92110 0.90576 1.02142 1.21136 1.09373 0.98329 0.85916 1.43761 0.98330 1.00264 1.02551 1.94516 1.63238 1.73308 1.08295 1.94514 1.37707 1.14594 1.91919 1.20820 0.96105 1.00708 0.88098 1.20696 0.97807 0.94737 0.97648 1.20910 0.96742 0.86560 0.89651 1.86575 1.48556 1.22977 1.79987 0.94471 0.91407 0.90033 0.97647 0.95757 0.92342 0.82864 0.81436 0.80861 0.88451 0.89976 0.75772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.19 9.20 127.69 1.17 2.37 16 2 N -0.51 -17.31 4.09 -724.43 -2.96 -20.28 16 3 C 0.18 7.30 3.37 85.56 0.29 7.59 16 4 C -0.52 -26.65 9.01 25.60 0.23 -26.42 16 5 H 0.05 2.88 7.37 -2.91 -0.02 2.85 16 6 C 0.02 0.93 5.47 84.65 0.46 1.39 16 7 N -0.94 -55.28 13.96 21.45 0.30 -54.98 16 8 Si 0.93 40.80 27.47 68.60 1.88 42.69 16 9 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.25 -9.81 6.54 99.48 0.65 -9.16 16 12 C 0.15 4.32 4.66 38.21 0.18 4.50 16 13 C -0.15 -3.69 8.66 22.40 0.19 -3.50 16 14 C -0.04 -0.88 9.55 22.25 0.21 -0.67 16 15 C -0.06 -1.56 6.85 36.40 0.25 -1.32 16 16 N 0.04 0.96 4.45 -46.42 -0.21 0.75 16 17 O -0.18 -5.12 18.44 18.89 0.35 -4.78 16 18 O -0.17 -4.81 18.44 18.88 0.35 -4.46 16 19 C -0.04 -0.85 8.72 22.25 0.19 -0.66 16 20 C -0.11 -2.63 5.89 -19.73 -0.12 -2.75 16 21 C 0.14 3.35 6.86 71.24 0.49 3.84 16 22 O -0.57 -12.18 12.70 -148.98 -1.89 -14.07 16 23 H 0.04 1.00 7.34 -2.39 -0.02 0.99 16 24 H 0.07 2.41 6.76 -2.38 -0.02 2.39 16 25 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.01 0.23 6.54 -2.39 -0.02 0.22 16 27 H 0.02 1.03 7.48 -2.38 -0.02 1.01 16 28 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 29 H 0.15 3.53 7.14 -2.91 -0.02 3.50 16 30 H 0.17 3.12 7.60 -2.91 -0.02 3.10 16 31 H 0.17 3.27 6.13 -2.91 -0.02 3.25 16 32 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.39 4.86 8.11 -74.06 -0.60 4.26 16 Total: -1.00 -62.20 295.75 1.86 -60.34 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.49 Total: 10.41 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 3.56 Total: -15.62 kcal Atomic # 7 Polarization: -71.63 SS G_CDS: -2.87 Total: -74.50 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -1.20 Total: -23.31 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 1.88 Total: 42.69 kcal Total: -62.20 1.86 -60.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020468161.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.796 kcal (2) G-P(sol) polarization free energy of solvation -62.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds