Wall clock time and date at job start Mon Mar 30 2020 04:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 111.00126 * 2 1 4 4 C 1.50699 * 109.47090 * 293.95397 * 3 2 1 5 5 H 1.07998 * 120.00144 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00178 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99937 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00136 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47008 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47092 * 120.00312 * 8 6 4 11 11 H 1.48501 * 109.47320 * 240.00334 * 8 6 4 12 12 C 1.39675 * 110.99806 * 123.95121 * 2 1 3 13 13 C 1.38936 * 120.07998 * 295.76872 * 12 2 1 14 14 C 1.38075 * 119.92391 * 179.69808 * 13 12 2 15 15 C 1.38307 * 120.08114 * 0.57793 * 14 13 12 16 16 C 1.50696 * 119.93079 * 179.69645 * 15 14 13 17 17 O 1.42893 * 109.47129 * 270.02768 * 16 15 14 18 18 C 1.38267 * 120.14445 * 359.72533 * 15 14 13 19 19 C 1.38130 * 120.07832 * 359.97377 * 18 15 14 20 20 N 1.47998 * 120.03836 * 180.02562 * 19 18 15 21 21 O 1.21799 * 120.00353 * 359.96953 * 20 19 18 22 22 O 1.21806 * 119.99807 * 179.97438 * 20 19 18 23 23 H 1.09009 * 109.47037 * 296.04385 * 1 2 3 24 24 H 1.08992 * 109.47254 * 56.04810 * 1 2 3 25 25 H 1.09004 * 109.47303 * 176.04758 * 1 2 3 26 26 H 1.09003 * 109.47282 * 53.95191 * 3 2 1 27 27 H 1.09001 * 109.47321 * 173.95223 * 3 2 1 28 28 H 0.96997 * 119.99980 * 179.97438 * 7 6 4 29 29 H 1.07998 * 120.02955 * 359.97438 * 13 12 2 30 30 H 1.08006 * 119.96117 * 180.30540 * 14 13 12 31 31 H 1.09003 * 109.46869 * 30.02510 * 16 15 14 32 32 H 1.08994 * 109.47064 * 150.02475 * 16 15 14 33 33 H 0.96702 * 114.00357 * 180.02562 * 17 16 15 34 34 H 1.08003 * 119.96201 * 179.97438 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5115 -2.0484 6 6 2.0268 3.3494 -1.5285 7 7 2.7120 4.0019 -0.6150 8 14 1.5831 4.1867 -3.1383 9 1 0.8157 3.2440 -3.9914 10 1 0.7551 5.3877 -2.8598 11 1 2.8250 4.5943 -3.8431 12 6 1.9695 -0.7283 1.0817 13 6 1.7311 -0.2978 2.3810 14 6 2.2221 -1.0236 3.4481 15 6 2.9607 -2.1714 3.2245 16 6 3.5007 -2.9572 4.3915 17 8 4.8012 -2.4722 4.7313 18 6 3.2052 -2.5992 1.9326 19 6 2.7117 -1.8813 0.8606 20 7 2.9735 -2.3403 -0.5218 21 8 3.6248 -3.3512 -0.7149 22 8 2.5376 -1.7070 -1.4666 23 1 -0.3633 0.4512 0.9234 24 1 -0.3633 0.5739 -0.8524 25 1 -0.3634 -1.0252 -0.0708 26 1 1.5611 1.9273 0.8309 27 1 3.0797 1.3444 0.1083 28 1 2.9866 4.9179 -0.7770 29 1 1.1586 0.6010 2.5561 30 1 2.0329 -0.6923 4.4585 31 1 2.8349 -2.8415 5.2467 32 1 3.5651 -4.0111 4.1212 33 1 5.2109 -2.9336 5.4759 34 1 3.7826 -3.4957 1.7615 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020468162.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:31 Heat of formation + Delta-G solvation = -7.696921 kcal Electronic energy + Delta-G solvation = -20257.996113 eV Core-core repulsion = 16967.011143 eV Total energy + Delta-G solvation = -3290.984970 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.56143 -39.76826 -37.50144 -36.10983 -35.60108 -32.72503 -31.81567 -30.78672 -27.44478 -26.51110 -26.14135 -24.25599 -22.84438 -21.69377 -20.50550 -18.39318 -17.90538 -17.72452 -16.84382 -16.68466 -16.13241 -15.79553 -14.96498 -14.75457 -14.27650 -14.09379 -13.81650 -13.35773 -12.92248 -12.48899 -12.11651 -12.09678 -11.71080 -11.28448 -11.03765 -10.85749 -10.74038 -10.67846 -10.49577 -10.37782 -10.35771 -10.07458 -9.42449 -9.34990 -8.80647 -8.51545 -7.65167 -6.09101 -4.10455 0.30021 0.97999 1.82882 2.01652 3.31005 3.32578 3.39076 3.45136 4.09514 4.23171 4.46208 4.57041 4.65254 4.87635 4.92643 5.02225 5.17295 5.26999 5.34793 5.58417 5.72852 5.92800 5.94198 6.12253 6.17585 6.42068 6.55318 6.94423 7.01928 7.10720 7.31760 7.68696 7.78590 7.99144 8.35548 8.37945 8.96911 9.53943 11.02098 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022793 B = 0.005621 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.177294 B = 4980.544675 C = 5556.539499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.505 5.505 3 C 0.201 3.799 4 C -0.505 4.505 5 H 0.072 0.928 6 C 0.056 3.944 7 N -0.900 5.900 8 Si 0.902 3.098 9 H -0.269 1.269 10 H -0.285 1.285 11 H -0.283 1.283 12 C 0.192 3.808 13 C -0.157 4.157 14 C -0.043 4.043 15 C -0.116 4.116 16 C 0.124 3.876 17 O -0.566 6.566 18 C -0.036 4.036 19 C -0.039 4.039 20 N 0.028 4.972 21 O -0.223 6.223 22 O -0.075 6.075 23 H 0.020 0.980 24 H 0.092 0.908 25 H 0.047 0.953 26 H 0.000 1.000 27 H 0.030 0.970 28 H 0.262 0.738 29 H 0.146 0.854 30 H 0.136 0.864 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.381 0.619 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.873 -12.490 12.169 17.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.227 5.227 3 C 0.079 3.921 4 C -0.543 4.543 5 H 0.090 0.910 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.730 3.270 9 H -0.193 1.193 10 H -0.212 1.212 11 H -0.209 1.209 12 C 0.095 3.905 13 C -0.177 4.177 14 C -0.062 4.062 15 C -0.117 4.117 16 C 0.047 3.953 17 O -0.372 6.372 18 C -0.055 4.055 19 C -0.124 4.124 20 N 0.550 4.450 21 O -0.420 6.420 22 O -0.311 6.311 23 H 0.039 0.961 24 H 0.111 0.889 25 H 0.066 0.934 26 H 0.018 0.982 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.164 0.836 30 H 0.154 0.846 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.228 0.772 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.803 -12.044 11.964 17.072 hybrid contribution -0.136 0.536 0.088 0.560 sum -1.938 -11.508 12.052 16.776 Atomic orbital electron populations 1.22279 0.85637 1.00440 1.01743 1.60144 1.08371 1.18951 1.35215 1.19886 0.95462 0.78927 0.97842 1.21123 1.35160 0.96671 1.01342 0.90997 1.24989 0.95099 0.97273 0.97204 1.69964 1.38239 1.11548 1.34195 0.86360 0.78235 0.79141 0.83260 1.19331 1.21173 1.20943 1.19103 0.90054 0.89914 0.91464 1.21947 1.02532 1.01460 0.91794 1.21298 0.93041 0.92117 0.99721 1.19425 1.01369 0.97878 0.93075 1.20871 0.84592 0.95725 0.94149 1.86615 1.31387 1.63599 1.55565 1.20755 0.95391 0.99150 0.90217 1.21185 1.09075 0.99757 0.82358 1.43345 0.98915 0.99667 1.03115 1.94452 1.40302 1.15848 1.91444 1.94699 1.49624 1.53773 1.33049 0.96115 0.88939 0.93371 0.98201 0.95227 0.92853 0.83645 0.84591 0.92211 0.92337 0.77167 0.83381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.84 9.20 60.07 0.55 1.39 16 2 N -0.50 -10.91 2.60 -180.32 -0.47 -11.38 16 3 C 0.20 5.13 4.30 -4.98 -0.02 5.11 16 4 C -0.50 -13.92 8.46 -34.44 -0.29 -14.22 16 5 H 0.07 1.97 7.12 -52.49 -0.37 1.60 16 6 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.42 13.29 55.43 0.74 -25.69 16 8 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 12 C 0.19 3.63 4.67 -83.78 -0.39 3.24 16 13 C -0.16 -2.46 8.66 -39.38 -0.34 -2.81 16 14 C -0.04 -0.54 9.69 -39.62 -0.38 -0.93 16 15 C -0.12 -1.47 5.51 -104.59 -0.58 -2.04 16 16 C 0.12 1.10 7.17 36.00 0.26 1.35 16 17 O -0.57 -5.65 13.64 -35.23 -0.48 -6.13 16 18 C -0.04 -0.53 9.20 -39.61 -0.36 -0.89 16 19 C -0.04 -0.72 6.87 -79.75 -0.55 -1.27 16 20 N 0.03 0.58 4.45 34.06 0.15 0.73 16 21 O -0.22 -4.50 18.45 -29.46 -0.54 -5.04 16 22 O -0.07 -1.72 17.10 -29.46 -0.50 -2.22 16 23 H 0.02 0.35 7.36 -51.92 -0.38 -0.03 16 24 H 0.09 1.81 6.76 -51.93 -0.35 1.46 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.00 0.01 7.46 -51.93 -0.39 -0.38 16 27 H 0.03 0.84 8.06 -51.93 -0.42 0.42 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.15 2.22 7.14 -52.49 -0.37 1.84 16 30 H 0.14 1.29 8.06 -52.48 -0.42 0.86 16 31 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 33 H 0.38 1.73 9.12 45.56 0.42 2.14 16 34 H 0.15 1.97 7.61 -52.48 -0.40 1.57 16 LS Contribution 300.88 15.07 4.53 4.53 Total: -1.00 -33.19 300.88 -6.89 -40.08 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -3.09 Total: -1.85 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -2.20 Total: -9.59 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.42 Total: -36.33 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -1.53 Total: -13.39 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.19 -6.89 -40.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020468162.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.388 kcal (2) G-P(sol) polarization free energy of solvation -33.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds