Wall clock time and date at job start Mon Mar 30 2020 04:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 111.00126 * 2 1 4 4 C 1.50699 * 109.47090 * 293.95397 * 3 2 1 5 5 H 1.07998 * 120.00144 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00178 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99937 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00136 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47008 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47092 * 120.00312 * 8 6 4 11 11 H 1.48501 * 109.47320 * 240.00334 * 8 6 4 12 12 C 1.39675 * 110.99806 * 123.95121 * 2 1 3 13 13 C 1.38936 * 120.07998 * 295.76872 * 12 2 1 14 14 C 1.38075 * 119.92391 * 179.69808 * 13 12 2 15 15 C 1.38307 * 120.08114 * 0.57793 * 14 13 12 16 16 C 1.50696 * 119.93079 * 179.69645 * 15 14 13 17 17 O 1.42893 * 109.47129 * 270.02768 * 16 15 14 18 18 C 1.38267 * 120.14445 * 359.72533 * 15 14 13 19 19 C 1.38130 * 120.07832 * 359.97377 * 18 15 14 20 20 N 1.47998 * 120.03836 * 180.02562 * 19 18 15 21 21 O 1.21799 * 120.00353 * 359.96953 * 20 19 18 22 22 O 1.21806 * 119.99807 * 179.97438 * 20 19 18 23 23 H 1.09009 * 109.47037 * 296.04385 * 1 2 3 24 24 H 1.08992 * 109.47254 * 56.04810 * 1 2 3 25 25 H 1.09004 * 109.47303 * 176.04758 * 1 2 3 26 26 H 1.09003 * 109.47282 * 53.95191 * 3 2 1 27 27 H 1.09001 * 109.47321 * 173.95223 * 3 2 1 28 28 H 0.96997 * 119.99980 * 179.97438 * 7 6 4 29 29 H 1.07998 * 120.02955 * 359.97438 * 13 12 2 30 30 H 1.08006 * 119.96117 * 180.30540 * 14 13 12 31 31 H 1.09003 * 109.46869 * 30.02510 * 16 15 14 32 32 H 1.08994 * 109.47064 * 150.02475 * 16 15 14 33 33 H 0.96702 * 114.00357 * 180.02562 * 17 16 15 34 34 H 1.08003 * 119.96201 * 179.97438 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5115 -2.0484 6 6 2.0268 3.3494 -1.5285 7 7 2.7120 4.0019 -0.6150 8 14 1.5831 4.1867 -3.1383 9 1 0.8157 3.2440 -3.9914 10 1 0.7551 5.3877 -2.8598 11 1 2.8250 4.5943 -3.8431 12 6 1.9695 -0.7283 1.0817 13 6 1.7311 -0.2978 2.3810 14 6 2.2221 -1.0236 3.4481 15 6 2.9607 -2.1714 3.2245 16 6 3.5007 -2.9572 4.3915 17 8 4.8012 -2.4722 4.7313 18 6 3.2052 -2.5992 1.9326 19 6 2.7117 -1.8813 0.8606 20 7 2.9735 -2.3403 -0.5218 21 8 3.6248 -3.3512 -0.7149 22 8 2.5376 -1.7070 -1.4666 23 1 -0.3633 0.4512 0.9234 24 1 -0.3633 0.5739 -0.8524 25 1 -0.3634 -1.0252 -0.0708 26 1 1.5611 1.9273 0.8309 27 1 3.0797 1.3444 0.1083 28 1 2.9866 4.9179 -0.7770 29 1 1.1586 0.6010 2.5561 30 1 2.0329 -0.6923 4.4585 31 1 2.8349 -2.8415 5.2467 32 1 3.5651 -4.0111 4.1212 33 1 5.2109 -2.9336 5.4759 34 1 3.7826 -3.4957 1.7615 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020468162.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:31 Heat of formation + Delta-G solvation = -30.853875 kcal Electronic energy + Delta-G solvation = -20259.000274 eV Core-core repulsion = 16967.011143 eV Total energy + Delta-G solvation = -3291.989131 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.08957 -41.08111 -38.64804 -37.37140 -37.02282 -34.76652 -33.09727 -32.02602 -29.38991 -27.75134 -27.54256 -25.82178 -24.22201 -23.23840 -21.96114 -19.83652 -19.36575 -18.60015 -18.45796 -18.30912 -17.63545 -17.04256 -16.71879 -15.98355 -15.61071 -15.43446 -15.11113 -14.62101 -14.27138 -13.95643 -13.76342 -13.29924 -13.16449 -12.86941 -12.69534 -12.49632 -12.47866 -12.34431 -12.09465 -12.03291 -12.01085 -11.42158 -10.97807 -10.66953 -10.61100 -10.07051 -9.30854 -8.24868 -6.33911 -1.11584 -0.20306 0.39462 0.58138 1.40305 1.42778 1.56493 2.14155 2.38945 2.81048 3.09258 3.28044 3.50465 3.77905 3.83374 3.88388 4.01995 4.25256 4.41424 4.45238 4.50404 4.58908 4.69534 4.87118 4.90682 5.04781 5.08614 5.12989 5.27008 5.47408 5.64296 5.96383 6.02461 6.49387 6.73917 6.79730 6.94908 7.35269 8.86784 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022793 B = 0.005621 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.177294 B = 4980.544675 C = 5556.539499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.519 5.519 3 C 0.224 3.776 4 C -0.520 4.520 5 H 0.066 0.934 6 C 0.005 3.995 7 N -0.934 5.934 8 Si 0.970 3.030 9 H -0.263 1.263 10 H -0.273 1.273 11 H -0.282 1.282 12 C 0.157 3.843 13 C -0.163 4.163 14 C -0.023 4.023 15 C -0.104 4.104 16 C 0.124 3.876 17 O -0.593 6.593 18 C -0.034 4.034 19 C -0.062 4.062 20 N 0.032 4.968 21 O -0.194 6.194 22 O -0.153 6.153 23 H 0.036 0.964 24 H 0.074 0.926 25 H 0.066 0.934 26 H -0.012 1.012 27 H -0.012 1.012 28 H 0.265 0.735 29 H 0.146 0.854 30 H 0.180 0.820 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.405 0.595 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.011 -13.751 14.579 20.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.241 5.241 3 C 0.100 3.900 4 C -0.558 4.558 5 H 0.084 0.916 6 C -0.193 4.193 7 N -0.575 5.575 8 Si 0.795 3.205 9 H -0.187 1.187 10 H -0.199 1.199 11 H -0.208 1.208 12 C 0.060 3.940 13 C -0.184 4.184 14 C -0.041 4.041 15 C -0.105 4.105 16 C 0.047 3.953 17 O -0.403 6.403 18 C -0.053 4.053 19 C -0.146 4.146 20 N 0.547 4.453 21 O -0.403 6.403 22 O -0.372 6.372 23 H 0.055 0.945 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.006 0.994 27 H 0.006 0.994 28 H 0.074 0.926 29 H 0.164 0.836 30 H 0.198 0.802 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.256 0.744 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.018 -13.231 14.318 19.599 hybrid contribution 0.015 0.728 -0.411 0.836 sum -2.003 -12.503 13.907 18.808 Atomic orbital electron populations 1.22250 0.84279 1.01411 1.01723 1.59831 1.09785 1.16593 1.37843 1.19389 0.92818 0.81288 0.96519 1.21413 1.35073 0.97183 1.02118 0.91575 1.25867 0.94844 0.97924 1.00679 1.70073 1.39250 1.11997 1.36164 0.85312 0.78033 0.78245 0.78927 1.18745 1.19869 1.20792 1.19216 0.92093 0.90704 0.91975 1.22010 1.03051 1.01994 0.91306 1.21785 0.90686 0.90981 1.00652 1.20015 0.99585 0.97414 0.93473 1.21020 0.84884 0.95860 0.93494 1.86534 1.31918 1.64685 1.57167 1.21125 0.94808 0.99273 0.90140 1.21434 1.10885 1.00966 0.81358 1.43724 0.98186 0.99241 1.04127 1.94382 1.38683 1.15324 1.91919 1.94711 1.52758 1.55168 1.34516 0.94531 0.90676 0.91544 0.99433 0.99363 0.92571 0.83650 0.80248 0.88771 0.90161 0.74371 0.81638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.89 9.20 127.69 1.17 3.06 16 2 N -0.52 -23.50 2.60 -724.42 -1.88 -25.39 16 3 C 0.22 12.05 4.30 85.56 0.37 12.42 16 4 C -0.52 -29.93 8.46 25.60 0.22 -29.71 16 5 H 0.07 3.80 7.12 -2.91 -0.02 3.78 16 6 C 0.00 0.29 5.46 84.66 0.46 0.75 16 7 N -0.93 -56.32 13.29 21.45 0.28 -56.04 16 8 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 9 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 C 0.16 6.04 4.67 38.22 0.18 6.22 16 13 C -0.16 -4.97 8.66 22.40 0.19 -4.78 16 14 C -0.02 -0.49 9.69 22.25 0.22 -0.28 16 15 C -0.10 -2.21 5.51 -19.84 -0.11 -2.32 16 16 C 0.12 1.53 7.17 71.23 0.51 2.04 16 17 O -0.59 -9.15 13.64 -148.98 -2.03 -11.18 16 18 C -0.03 -0.94 9.20 22.25 0.20 -0.73 16 19 C -0.06 -2.28 6.87 36.51 0.25 -2.03 16 20 N 0.03 1.36 4.45 -46.16 -0.21 1.15 16 21 O -0.19 -7.80 18.45 18.89 0.35 -7.45 16 22 O -0.15 -7.48 17.10 18.88 0.32 -7.16 16 23 H 0.04 1.25 7.36 -2.38 -0.02 1.23 16 24 H 0.07 3.08 6.76 -2.39 -0.02 3.07 16 25 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 26 H -0.01 -0.65 7.46 -2.39 -0.02 -0.67 16 27 H -0.01 -0.72 8.06 -2.39 -0.02 -0.74 16 28 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 29 H 0.15 4.37 7.14 -2.91 -0.02 4.35 16 30 H 0.18 2.38 8.06 -2.91 -0.02 2.36 16 31 H 0.09 0.58 8.08 -2.39 -0.02 0.56 16 32 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 33 H 0.40 1.85 9.12 -74.06 -0.68 1.17 16 34 H 0.17 3.91 7.61 -2.91 -0.02 3.89 16 Total: -1.00 -76.01 300.88 2.99 -73.02 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: 0.46 Total: 1.28 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 3.67 Total: -15.36 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -1.80 Total: -80.27 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -1.36 Total: -25.80 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -76.01 2.99 -73.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020468162.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.171 kcal (2) G-P(sol) polarization free energy of solvation -76.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds