Wall clock time and date at job start Mon Mar 30 2020 04:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00345 * 2 1 4 4 H 1.48506 * 109.46777 * 269.99882 * 3 2 1 5 5 H 1.48502 * 109.46880 * 29.99713 * 3 2 1 6 6 H 1.48492 * 109.47226 * 149.99696 * 3 2 1 7 7 C 1.37881 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99993 * 0.02562 * 7 2 1 9 9 C 1.50709 * 120.00026 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.46806 * 180.02562 * 9 7 2 11 11 C 1.34778 * 119.99575 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00417 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99859 * 180.02562 * 11 10 9 14 14 N 1.46903 * 109.47134 * 179.97438 * 13 11 10 15 15 C 1.46899 * 110.99970 * 179.97438 * 14 13 11 16 16 C 1.50698 * 109.47087 * 179.97438 * 15 14 13 17 17 C 1.38271 * 119.98983 * 270.25756 * 16 15 14 18 18 C 1.38219 * 120.05279 * 180.25774 * 17 16 15 19 19 C 1.38227 * 120.02402 * 359.48356 * 18 17 16 20 20 C 1.38435 * 119.97416 * 0.26250 * 19 18 17 21 21 F 1.35097 * 120.02437 * 179.97438 * 20 19 18 22 22 C 1.38179 * 119.98470 * 90.00254 * 16 15 14 23 23 H 0.97001 * 120.00371 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46990 * 60.00006 * 9 7 2 25 25 H 1.08999 * 109.47055 * 300.00169 * 9 7 2 26 26 H 0.96993 * 120.00267 * 359.97438 * 10 9 7 27 27 H 1.09002 * 109.47620 * 59.99135 * 13 11 10 28 28 H 1.09008 * 109.46637 * 299.98994 * 13 11 10 29 29 H 1.00899 * 110.99975 * 303.94762 * 14 13 11 30 30 H 1.09007 * 109.46870 * 59.99956 * 15 14 13 31 31 H 1.08994 * 109.47270 * 299.99956 * 15 14 13 32 32 H 1.08000 * 119.97479 * 0.02562 * 17 16 15 33 33 H 1.08002 * 119.99072 * 179.76964 * 18 17 16 34 34 H 1.07999 * 120.01289 * 180.23490 * 19 18 17 35 35 H 1.07994 * 120.01414 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 5.3249 -2.8216 0.0020 12 8 6.1130 -1.8999 0.0025 13 6 5.8272 -4.2424 0.0013 14 7 7.2962 -4.2425 0.0020 15 6 7.8226 -5.6139 0.0019 16 6 9.3291 -5.5737 0.0020 17 6 10.0199 -5.5499 -1.1955 18 6 11.4017 -5.5184 -1.1970 19 6 12.0944 -5.5000 -0.0010 20 6 11.4037 -5.5185 1.1986 21 9 12.0797 -5.5011 2.3682 22 6 10.0193 -5.5554 1.1989 23 1 -0.4851 0.8400 -0.0004 24 1 3.8745 -0.6801 0.8912 25 1 3.8752 -0.6805 -0.8888 26 1 3.3695 -3.3126 0.0010 27 1 5.4645 -4.7557 -0.8894 28 1 5.4631 -4.7569 0.8907 29 1 7.6582 -3.7159 -0.7789 30 1 7.4735 -6.1370 -0.8884 31 1 7.4727 -6.1374 0.8916 32 1 9.4794 -5.5596 -2.1305 33 1 11.9404 -5.5035 -2.1330 34 1 13.1740 -5.4715 -0.0023 35 1 9.4795 -5.5703 2.1341 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020473603.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:44 Heat of formation + Delta-G solvation = -59.542943 kcal Electronic energy + Delta-G solvation = -18588.215325 eV Core-core repulsion = 15307.354932 eV Total energy + Delta-G solvation = -3280.860393 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.09389 -39.56974 -38.92142 -35.83084 -34.26067 -32.39129 -31.84754 -30.77081 -28.67602 -26.89999 -24.36009 -23.01063 -21.89688 -21.61900 -19.91727 -17.86559 -17.16033 -16.75910 -16.44180 -16.09007 -15.84021 -15.70760 -15.43634 -14.59785 -14.32496 -14.17434 -13.97391 -13.61735 -13.41718 -12.84127 -12.58651 -12.44507 -12.31835 -12.16393 -12.00476 -11.66060 -11.22971 -11.02849 -10.77085 -9.98021 -9.51311 -9.30476 -9.23529 -8.98748 -8.79166 -8.51557 -8.15575 -6.22872 -4.25266 0.85223 0.94229 3.20285 3.22800 3.26844 3.33120 3.42035 3.76796 3.98288 4.32230 4.35414 4.41359 4.54922 4.75463 4.89876 4.99282 5.12458 5.17310 5.24679 5.29201 5.37738 5.50534 5.57142 5.77504 5.85326 6.00486 6.20184 6.60129 6.68661 6.84027 7.06137 7.20931 7.22846 7.38143 8.12334 8.49905 8.73735 8.92399 9.37356 10.89055 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.038741 B = 0.002904 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.577676 B = 9638.872058 C = 9822.452553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.221 3.779 10 N -0.707 5.707 11 C 0.498 3.502 12 O -0.545 6.545 13 C 0.040 3.960 14 N -0.668 5.668 15 C 0.097 3.903 16 C -0.051 4.051 17 C -0.123 4.123 18 C -0.092 4.092 19 C -0.156 4.156 20 C 0.096 3.904 21 F -0.141 7.141 22 C -0.129 4.129 23 H 0.268 0.732 24 H 0.025 0.975 25 H 0.020 0.980 26 H 0.396 0.604 27 H 0.058 0.942 28 H 0.100 0.900 29 H 0.353 0.647 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.025 -15.077 -1.990 25.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.097 0.903 9 C 0.099 3.901 10 N -0.356 5.356 11 C 0.282 3.718 12 O -0.423 6.423 13 C -0.092 4.092 14 N -0.301 5.301 15 C -0.032 4.032 16 C -0.052 4.052 17 C -0.142 4.142 18 C -0.110 4.110 19 C -0.175 4.175 20 C 0.076 3.924 21 F -0.120 7.120 22 C -0.149 4.149 23 H 0.078 0.922 24 H 0.043 0.957 25 H 0.038 0.962 26 H 0.230 0.770 27 H 0.076 0.924 28 H 0.118 0.882 29 H 0.173 0.827 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 20.454 -14.191 -1.259 24.927 hybrid contribution -0.091 0.302 -0.681 0.750 sum 20.363 -13.889 -1.940 24.725 Atomic orbital electron populations 1.69875 1.06228 1.27459 1.49420 1.24800 0.94792 0.99209 0.93841 0.86811 0.80618 0.83199 0.79040 1.19866 1.20879 1.18456 1.21096 0.88531 0.95216 1.53360 0.90259 1.19482 0.95196 0.78646 0.96773 1.46162 1.05625 1.11064 1.72775 1.20380 0.83189 0.90599 0.77610 1.90666 1.55442 1.46033 1.50179 1.21848 0.88907 0.95753 1.02715 1.60132 1.05957 1.12148 1.51830 1.20931 0.89730 0.90621 1.01922 1.19613 0.95455 0.97817 0.92313 1.21156 0.94357 1.00847 0.97857 1.20975 0.94103 0.98379 0.97533 1.21158 1.00851 1.04052 0.91420 1.17722 0.90228 1.03067 0.81338 1.91502 1.80250 1.93932 1.46277 1.21056 0.92011 1.02102 0.99693 0.92243 0.95671 0.96229 0.77045 0.92411 0.88181 0.82724 0.93748 0.89631 0.85429 0.84994 0.84893 0.84461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.96 55.43 0.77 -25.65 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.54 -14.84 9.83 -34.43 -0.34 -15.17 16 8 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 9 C 0.22 5.41 4.50 -5.19 -0.02 5.39 16 10 N -0.71 -13.94 5.55 -61.47 -0.34 -14.28 16 11 C 0.50 9.18 7.87 -10.98 -0.09 9.09 16 12 O -0.55 -12.31 16.20 5.56 0.09 -12.22 16 13 C 0.04 0.51 6.17 -4.97 -0.03 0.48 16 14 N -0.67 -8.33 6.11 -116.33 -0.71 -9.04 16 15 C 0.10 0.89 5.81 -4.98 -0.03 0.86 16 16 C -0.05 -0.49 5.39 -104.63 -0.56 -1.06 16 17 C -0.12 -1.03 9.70 -39.58 -0.38 -1.42 16 18 C -0.09 -0.71 10.04 -39.59 -0.40 -1.11 16 19 C -0.16 -1.36 10.03 -39.51 -0.40 -1.76 16 20 C 0.10 1.00 7.30 -39.42 -0.29 0.71 16 21 F -0.14 -1.61 17.27 2.25 0.04 -1.57 16 22 C -0.13 -1.33 9.68 -39.51 -0.38 -1.72 16 23 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 25 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 26 H 0.40 6.75 8.32 -40.82 -0.34 6.41 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.10 1.10 8.14 -51.92 -0.42 0.68 16 29 H 0.35 4.63 8.42 -39.29 -0.33 4.29 16 30 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 32 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 35 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 311.45 15.07 4.69 4.69 Total: -1.00 -32.76 311.45 -7.54 -40.29 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -4.39 Total: 4.61 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -3.02 Total: -3.61 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.28 Total: -48.97 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.22 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.76 -7.54 -40.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020473603.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.252 kcal (2) G-P(sol) polarization free energy of solvation -32.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds