Wall clock time and date at job start Mon Mar 30 2020 04:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00345 * 2 1 4 4 H 1.48506 * 109.46777 * 269.99882 * 3 2 1 5 5 H 1.48502 * 109.46880 * 29.99713 * 3 2 1 6 6 H 1.48492 * 109.47226 * 149.99696 * 3 2 1 7 7 C 1.37881 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99993 * 0.02562 * 7 2 1 9 9 C 1.50709 * 120.00026 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.46806 * 180.02562 * 9 7 2 11 11 C 1.34778 * 119.99575 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00417 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99859 * 180.02562 * 11 10 9 14 14 N 1.46903 * 109.47134 * 179.97438 * 13 11 10 15 15 C 1.46899 * 110.99970 * 179.97438 * 14 13 11 16 16 C 1.50698 * 109.47087 * 179.97438 * 15 14 13 17 17 C 1.38271 * 119.98983 * 270.25756 * 16 15 14 18 18 C 1.38219 * 120.05279 * 180.25774 * 17 16 15 19 19 C 1.38227 * 120.02402 * 359.48356 * 18 17 16 20 20 C 1.38435 * 119.97416 * 0.26250 * 19 18 17 21 21 F 1.35097 * 120.02437 * 179.97438 * 20 19 18 22 22 C 1.38179 * 119.98470 * 90.00254 * 16 15 14 23 23 H 0.97001 * 120.00371 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46990 * 60.00006 * 9 7 2 25 25 H 1.08999 * 109.47055 * 300.00169 * 9 7 2 26 26 H 0.96993 * 120.00267 * 359.97438 * 10 9 7 27 27 H 1.09002 * 109.47620 * 59.99135 * 13 11 10 28 28 H 1.09008 * 109.46637 * 299.98994 * 13 11 10 29 29 H 1.00899 * 110.99975 * 303.94762 * 14 13 11 30 30 H 1.09007 * 109.46870 * 59.99956 * 15 14 13 31 31 H 1.08994 * 109.47270 * 299.99956 * 15 14 13 32 32 H 1.08000 * 119.97479 * 0.02562 * 17 16 15 33 33 H 1.08002 * 119.99072 * 179.76964 * 18 17 16 34 34 H 1.07999 * 120.01289 * 180.23490 * 19 18 17 35 35 H 1.07994 * 120.01414 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 5.3249 -2.8216 0.0020 12 8 6.1130 -1.8999 0.0025 13 6 5.8272 -4.2424 0.0013 14 7 7.2962 -4.2425 0.0020 15 6 7.8226 -5.6139 0.0019 16 6 9.3291 -5.5737 0.0020 17 6 10.0199 -5.5499 -1.1955 18 6 11.4017 -5.5184 -1.1970 19 6 12.0944 -5.5000 -0.0010 20 6 11.4037 -5.5185 1.1986 21 9 12.0797 -5.5011 2.3682 22 6 10.0193 -5.5554 1.1989 23 1 -0.4851 0.8400 -0.0004 24 1 3.8745 -0.6801 0.8912 25 1 3.8752 -0.6805 -0.8888 26 1 3.3695 -3.3126 0.0010 27 1 5.4645 -4.7557 -0.8894 28 1 5.4631 -4.7569 0.8907 29 1 7.6582 -3.7159 -0.7789 30 1 7.4735 -6.1370 -0.8884 31 1 7.4727 -6.1374 0.8916 32 1 9.4794 -5.5596 -2.1305 33 1 11.9404 -5.5035 -2.1330 34 1 13.1740 -5.4715 -0.0023 35 1 9.4795 -5.5703 2.1341 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020473603.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:43 Heat of formation + Delta-G solvation = -83.479423 kcal Electronic energy + Delta-G solvation = -18589.253289 eV Core-core repulsion = 15307.354932 eV Total energy + Delta-G solvation = -3281.898357 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.89515 -40.62092 -40.04149 -36.80709 -36.02638 -34.39749 -32.66351 -31.45753 -30.34131 -28.09329 -25.41316 -23.71068 -23.67866 -22.33263 -21.47109 -19.27635 -18.39084 -17.73187 -17.39730 -17.14959 -17.06838 -16.77856 -16.59742 -16.13615 -15.58486 -15.33936 -14.88941 -14.80774 -14.48379 -14.36332 -13.98012 -13.93206 -13.25137 -13.05315 -12.97945 -12.89851 -12.68334 -12.55381 -11.93971 -11.89245 -11.65204 -10.91962 -10.78941 -9.96872 -9.91061 -9.69409 -9.35568 -8.40160 -6.46889 0.16943 0.26773 1.32370 1.35155 1.47715 1.76902 2.27726 2.33365 2.66305 2.95410 3.26428 3.43829 3.73048 3.88163 3.95680 4.13519 4.27799 4.34453 4.41598 4.46910 4.56954 4.67709 4.80197 4.95911 5.03823 5.12388 5.18698 5.26784 5.37333 5.52823 5.54355 5.85750 5.97098 6.10900 6.30279 6.54693 6.88974 7.16471 7.45716 8.74525 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.038741 B = 0.002904 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.577676 B = 9638.872058 C = 9822.452553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.026 3.974 3 Si 0.937 3.063 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.232 3.768 10 N -0.707 5.707 11 C 0.496 3.504 12 O -0.589 6.589 13 C 0.055 3.945 14 N -0.688 5.688 15 C 0.101 3.899 16 C -0.062 4.062 17 C -0.124 4.124 18 C -0.090 4.090 19 C -0.159 4.159 20 C 0.070 3.930 21 F -0.153 7.153 22 C -0.145 4.145 23 H 0.272 0.728 24 H 0.009 0.991 25 H 0.011 0.989 26 H 0.410 0.590 27 H 0.091 0.909 28 H 0.123 0.877 29 H 0.348 0.652 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.149 0.851 33 H 0.161 0.839 34 H 0.149 0.851 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.168 -15.963 -3.092 26.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.174 4.174 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.079 0.921 9 C 0.108 3.892 10 N -0.357 5.357 11 C 0.283 3.717 12 O -0.470 6.470 13 C -0.077 4.077 14 N -0.321 5.321 15 C -0.027 4.027 16 C -0.063 4.063 17 C -0.142 4.142 18 C -0.108 4.108 19 C -0.177 4.177 20 C 0.051 3.949 21 F -0.132 7.132 22 C -0.164 4.164 23 H 0.081 0.919 24 H 0.027 0.973 25 H 0.029 0.971 26 H 0.246 0.754 27 H 0.109 0.891 28 H 0.140 0.860 29 H 0.166 0.834 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.167 0.833 33 H 0.179 0.821 34 H 0.167 0.833 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 21.596 -15.127 -2.359 26.472 hybrid contribution -0.425 0.501 -0.357 0.748 sum 21.171 -14.626 -2.716 25.875 Atomic orbital electron populations 1.69975 1.07662 1.28601 1.50772 1.25596 0.95528 1.02655 0.93647 0.85866 0.79186 0.79430 0.79453 1.18902 1.19879 1.18689 1.21310 0.89981 0.94600 1.52481 0.92085 1.19060 0.93294 0.81332 0.95487 1.46011 1.06875 1.09578 1.73282 1.21406 0.81941 0.92800 0.75560 1.90644 1.56301 1.48166 1.51869 1.21783 0.89228 0.91382 1.05274 1.60113 1.05726 1.14217 1.52015 1.20969 0.89329 0.88981 1.03390 1.19742 0.95816 0.98284 0.92442 1.21482 0.94844 0.99660 0.98234 1.21350 0.94153 0.97060 0.98260 1.21446 1.01870 1.03284 0.91139 1.18022 0.90601 1.04675 0.81642 1.91464 1.80467 1.94222 1.47056 1.21167 0.92204 1.02878 1.00167 0.91854 0.97322 0.97134 0.75444 0.89106 0.85963 0.83351 0.91386 0.88891 0.83348 0.82127 0.83283 0.84852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.43 13.96 21.45 0.30 -55.13 16 2 C 0.03 1.47 5.47 84.66 0.46 1.93 16 3 Si 0.94 44.15 27.47 68.60 1.88 46.04 16 4 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 6 H -0.26 -12.38 6.54 99.48 0.65 -11.73 16 7 C -0.55 -29.89 9.83 25.60 0.25 -29.64 16 8 H 0.06 3.48 7.84 -2.91 -0.02 3.46 16 9 C 0.23 11.32 4.50 85.64 0.39 11.70 16 10 N -0.71 -27.16 5.55 -466.77 -2.59 -29.75 16 11 C 0.50 17.56 7.87 87.66 0.69 18.25 16 12 O -0.59 -26.30 16.20 -3.03 -0.05 -26.35 16 13 C 0.05 1.23 6.17 85.56 0.53 1.76 16 14 N -0.69 -15.59 6.11 -521.97 -3.19 -18.78 16 15 C 0.10 1.57 5.81 85.56 0.50 2.07 16 16 C -0.06 -1.08 5.39 -19.87 -0.11 -1.18 16 17 C -0.12 -1.74 9.70 22.27 0.22 -1.52 16 18 C -0.09 -1.17 10.04 22.26 0.22 -0.94 16 19 C -0.16 -2.53 10.03 22.31 0.22 -2.31 16 20 C 0.07 1.44 7.30 22.38 0.16 1.60 16 21 F -0.15 -3.55 17.27 44.97 0.78 -2.78 16 22 C -0.14 -2.92 9.68 22.31 0.22 -2.70 16 23 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 24 H 0.01 0.46 7.20 -2.39 -0.02 0.44 16 25 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 26 H 0.41 13.40 8.32 -92.71 -0.77 12.63 16 27 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.12 2.25 8.14 -2.38 -0.02 2.23 16 29 H 0.35 8.45 8.42 -89.70 -0.76 7.70 16 30 H 0.07 0.76 8.09 -2.38 -0.02 0.74 16 31 H 0.09 1.31 8.09 -2.39 -0.02 1.29 16 32 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 33 H 0.16 1.10 8.06 -2.91 -0.02 1.07 16 34 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 35 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -71.20 311.45 0.42 -70.79 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -0.46 Total: 16.96 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 3.75 Total: -0.99 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -5.48 Total: -103.66 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.05 Total: -26.35 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.78 Total: -2.78 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.04 kcal Total: -71.20 0.42 -70.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020473603.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.693 kcal (2) G-P(sol) polarization free energy of solvation -71.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds