Wall clock time and date at job start Mon Mar 30 2020 04:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34505 * 125.78993 * 2 1 4 4 C 1.41378 * 106.84138 * 179.73439 * 3 2 1 5 5 C 1.34518 * 106.84239 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.79316 * 180.02562 * 5 4 3 7 7 N 1.46501 * 109.46816 * 89.99733 * 6 5 4 8 8 C 1.46495 * 120.00530 * 270.00093 * 7 6 5 9 9 C 1.34776 * 119.99451 * 90.00436 * 7 6 5 10 10 O 1.21442 * 120.00308 * 356.45687 * 9 7 6 11 11 C 1.48840 * 119.99933 * 176.46042 * 9 7 6 12 12 O 1.21500 * 119.99706 * 5.93564 * 11 9 7 13 13 N 1.34774 * 119.99947 * 185.93709 * 11 9 7 14 14 C 1.36120 * 119.99678 * 180.02562 * 13 11 9 15 15 H 1.07999 * 120.00197 * 359.97438 * 14 13 11 16 16 C 1.39586 * 120.00076 * 179.97438 * 14 13 11 17 17 N 1.31016 * 119.99660 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 120.00344 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46983 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47298 * 120.00163 * 18 16 14 21 21 H 1.48506 * 109.47213 * 240.00430 * 18 16 14 22 22 O 1.34303 * 125.78463 * 179.68371 * 2 1 3 23 23 H 1.09003 * 109.46955 * 90.00133 * 1 2 3 24 24 H 1.08997 * 109.47507 * 210.00267 * 1 2 3 25 25 H 1.09000 * 109.47561 * 330.00643 * 1 2 3 26 26 H 1.08005 * 126.57996 * 359.69347 * 3 2 1 27 27 H 1.08008 * 126.58403 * 179.97438 * 4 3 2 28 28 H 1.08991 * 109.47040 * 210.00012 * 6 5 4 29 29 H 1.08998 * 109.46895 * 330.00217 * 6 5 4 30 30 H 1.08996 * 109.47033 * 95.98813 * 8 7 6 31 31 H 1.08998 * 109.47287 * 215.99331 * 8 7 6 32 32 H 1.09010 * 109.46848 * 335.99606 * 8 7 6 33 33 H 0.96995 * 120.00101 * 359.97438 * 13 11 9 34 34 H 0.97006 * 119.99811 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0103 6 6 4.7705 -1.6380 0.0181 7 7 5.1502 -1.9335 1.4018 8 6 6.1193 -1.0802 2.0937 9 6 4.6079 -2.9905 2.0382 10 8 3.7571 -3.6598 1.4876 11 6 5.0516 -3.3376 3.4159 12 8 5.8217 -2.6078 4.0080 13 7 4.5991 -4.4613 4.0065 14 6 5.0045 -4.7784 5.2667 15 1 5.6890 -4.1297 5.7930 16 6 4.5355 -5.9420 5.8787 17 7 3.7055 -6.7291 5.2400 18 14 5.0923 -6.3775 7.6077 19 1 6.0236 -5.3334 8.1055 20 1 3.9106 -6.4541 8.5038 21 1 5.7851 -7.6909 7.5885 22 8 2.2923 -1.0895 0.0060 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5137 26 1 1.9665 2.1204 -0.0046 27 1 4.5212 1.2432 0.0076 28 1 4.5126 -2.5650 -0.4939 29 1 5.6059 -1.1605 -0.4939 30 1 5.5891 -0.3367 2.6887 31 1 6.7410 -1.6923 2.7471 32 1 6.7490 -0.5767 1.3600 33 1 3.9840 -5.0437 3.5340 34 1 3.3798 -7.5380 5.6652 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035699971.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:05 Heat of formation + Delta-G solvation = -44.343833 kcal Electronic energy + Delta-G solvation = -19929.963361 eV Core-core repulsion = 16637.389262 eV Total energy + Delta-G solvation = -3292.574100 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.45042 -39.66372 -37.28790 -35.58595 -34.12101 -33.04760 -32.05724 -31.40564 -28.97789 -26.45795 -25.74279 -24.54097 -22.08459 -21.61264 -20.09588 -19.00341 -18.11674 -16.77719 -16.54322 -16.31048 -15.73933 -15.16384 -14.94276 -14.32213 -14.02224 -13.97167 -13.37885 -13.16147 -12.99282 -12.86507 -12.69048 -12.39961 -12.30454 -12.09682 -11.91094 -11.68099 -11.45365 -11.21316 -10.48309 -10.42007 -10.23579 -9.77616 -9.74069 -8.52299 -8.34112 -8.23505 -7.90647 -6.68888 -4.01181 1.74263 2.39652 2.63088 3.02536 3.13595 3.15831 3.22218 3.42187 4.03624 4.22774 4.70677 4.77981 4.97776 5.09885 5.15253 5.16952 5.38198 5.39561 5.53042 5.58617 5.65388 5.87136 5.96099 6.01784 6.13719 6.24800 6.50449 6.61882 6.85288 7.29476 7.31273 7.58935 7.76593 8.29060 8.55785 8.93751 9.29623 9.82816 10.45905 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027906 B = 0.004545 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.144886 B = 6159.135773 C = 6645.608673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.015 4.015 3 C -0.218 4.218 4 C -0.200 4.200 5 C -0.023 4.023 6 C 0.192 3.808 7 N -0.598 5.598 8 C 0.074 3.926 9 C 0.512 3.488 10 O -0.537 6.537 11 C 0.395 3.605 12 O -0.589 6.589 13 N -0.497 5.497 14 C -0.305 4.305 15 H 0.114 0.886 16 C 0.031 3.969 17 N -0.868 5.868 18 Si 0.939 3.061 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.277 1.277 22 O -0.160 6.160 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.145 0.855 27 H 0.146 0.854 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.050 0.950 31 H 0.119 0.881 32 H 0.051 0.949 33 H 0.404 0.596 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.357 11.297 -9.821 15.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.066 4.066 3 C -0.237 4.237 4 C -0.221 4.221 5 C -0.075 4.075 6 C 0.069 3.931 7 N -0.333 5.333 8 C -0.068 4.068 9 C 0.299 3.701 10 O -0.413 6.413 11 C 0.180 3.820 12 O -0.478 6.478 13 N -0.131 5.131 14 C -0.436 4.436 15 H 0.132 0.868 16 C -0.176 4.176 17 N -0.506 5.506 18 Si 0.764 3.236 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.203 1.203 22 O -0.055 6.055 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.104 0.896 26 H 0.162 0.838 27 H 0.164 0.836 28 H 0.116 0.884 29 H 0.127 0.873 30 H 0.069 0.931 31 H 0.137 0.863 32 H 0.070 0.930 33 H 0.240 0.760 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.511 10.894 -9.678 14.650 hybrid contribution -0.175 -0.171 0.494 0.551 sum -1.686 10.723 -9.184 14.219 Atomic orbital electron populations 1.20286 0.85395 1.04082 1.03238 1.22499 0.94152 0.84481 1.05496 1.21499 0.92773 0.99126 1.10343 1.21536 0.98106 0.93710 1.08707 1.22996 0.83618 0.94798 1.06071 1.19844 0.90596 0.98169 0.84513 1.47710 1.44099 1.28699 1.12743 1.22394 0.92031 0.95528 0.96830 1.20822 0.81291 0.79932 0.88082 1.90704 1.31236 1.51329 1.68028 1.18841 0.89776 0.86100 0.87291 1.90455 1.40106 1.51840 1.65404 1.41578 1.38067 1.18825 1.14615 1.19939 1.26314 1.06802 0.90530 0.86834 1.25601 0.95679 0.95437 1.00883 1.69497 1.29225 1.13193 1.38644 0.85663 0.78779 0.78757 0.80385 1.18678 1.20288 1.20261 1.84082 1.16300 1.34621 1.70511 0.90274 0.90402 0.89563 0.83760 0.83622 0.88370 0.87300 0.93136 0.86344 0.92981 0.76016 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.42 36.01 0.38 -0.37 16 2 C -0.02 -0.22 7.32 -35.63 -0.26 -0.48 16 3 C -0.22 -2.90 10.81 -39.71 -0.43 -3.33 16 4 C -0.20 -2.77 10.81 -39.70 -0.43 -3.20 16 5 C -0.02 -0.36 6.90 -35.62 -0.25 -0.61 16 6 C 0.19 2.85 5.95 -5.19 -0.03 2.82 16 7 N -0.60 -10.87 2.86 -183.71 -0.52 -11.39 16 8 C 0.07 1.19 9.58 59.84 0.57 1.76 16 9 C 0.51 11.58 7.71 -11.87 -0.09 11.49 16 10 O -0.54 -13.09 16.09 5.42 0.09 -13.00 16 11 C 0.40 9.99 7.70 -11.87 -0.09 9.89 16 12 O -0.59 -15.25 12.69 5.37 0.07 -15.18 16 13 N -0.50 -13.35 5.24 -11.59 -0.06 -13.42 16 14 C -0.31 -8.36 9.67 -15.15 -0.15 -8.51 16 15 H 0.11 3.16 7.15 -52.49 -0.38 2.78 16 16 C 0.03 0.80 5.51 -17.40 -0.10 0.71 16 17 N -0.87 -23.27 13.03 55.53 0.72 -22.55 16 18 Si 0.94 19.97 29.56 -169.99 -5.02 14.94 16 19 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 22 O -0.16 -2.82 10.65 5.70 0.06 -2.76 16 23 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 27 H 0.15 1.63 8.06 -52.48 -0.42 1.21 16 28 H 0.10 1.52 7.47 -51.93 -0.39 1.13 16 29 H 0.11 1.16 7.85 -51.93 -0.41 0.75 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.12 2.21 5.35 -51.94 -0.28 1.94 16 32 H 0.05 0.62 7.83 -51.92 -0.41 0.21 16 33 H 0.40 11.02 7.36 -40.82 -0.30 10.72 16 34 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 LS Contribution 303.83 15.07 4.58 4.58 Total: -1.00 -31.96 303.83 -4.79 -36.75 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -3.83 Total: 11.85 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -0.87 Total: 10.18 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.14 Total: -47.36 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: 0.22 Total: -30.94 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.96 -4.79 -36.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035699971.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.597 kcal (2) G-P(sol) polarization free energy of solvation -31.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds