Wall clock time and date at job start Mon Mar 30 2020 04:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34505 * 125.78993 * 2 1 4 4 C 1.41378 * 106.84138 * 179.73439 * 3 2 1 5 5 C 1.34518 * 106.84239 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.79316 * 180.02562 * 5 4 3 7 7 N 1.46501 * 109.46816 * 89.99733 * 6 5 4 8 8 C 1.46495 * 120.00530 * 270.00093 * 7 6 5 9 9 C 1.34776 * 119.99451 * 90.00436 * 7 6 5 10 10 O 1.21442 * 120.00308 * 356.45687 * 9 7 6 11 11 C 1.48840 * 119.99933 * 176.46042 * 9 7 6 12 12 O 1.21500 * 119.99706 * 5.93564 * 11 9 7 13 13 N 1.34774 * 119.99947 * 185.93709 * 11 9 7 14 14 C 1.36120 * 119.99678 * 180.02562 * 13 11 9 15 15 H 1.07999 * 120.00197 * 359.97438 * 14 13 11 16 16 C 1.39586 * 120.00076 * 179.97438 * 14 13 11 17 17 N 1.31016 * 119.99660 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 120.00344 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46983 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47298 * 120.00163 * 18 16 14 21 21 H 1.48506 * 109.47213 * 240.00430 * 18 16 14 22 22 O 1.34303 * 125.78463 * 179.68371 * 2 1 3 23 23 H 1.09003 * 109.46955 * 90.00133 * 1 2 3 24 24 H 1.08997 * 109.47507 * 210.00267 * 1 2 3 25 25 H 1.09000 * 109.47561 * 330.00643 * 1 2 3 26 26 H 1.08005 * 126.57996 * 359.69347 * 3 2 1 27 27 H 1.08008 * 126.58403 * 179.97438 * 4 3 2 28 28 H 1.08991 * 109.47040 * 210.00012 * 6 5 4 29 29 H 1.08998 * 109.46895 * 330.00217 * 6 5 4 30 30 H 1.08996 * 109.47033 * 95.98813 * 8 7 6 31 31 H 1.08998 * 109.47287 * 215.99331 * 8 7 6 32 32 H 1.09010 * 109.46848 * 335.99606 * 8 7 6 33 33 H 0.96995 * 120.00101 * 359.97438 * 13 11 9 34 34 H 0.97006 * 119.99811 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0103 6 6 4.7705 -1.6380 0.0181 7 7 5.1502 -1.9335 1.4018 8 6 6.1193 -1.0802 2.0937 9 6 4.6079 -2.9905 2.0382 10 8 3.7571 -3.6598 1.4876 11 6 5.0516 -3.3376 3.4159 12 8 5.8217 -2.6078 4.0080 13 7 4.5991 -4.4613 4.0065 14 6 5.0045 -4.7784 5.2667 15 1 5.6890 -4.1297 5.7930 16 6 4.5355 -5.9420 5.8787 17 7 3.7055 -6.7291 5.2400 18 14 5.0923 -6.3775 7.6077 19 1 6.0236 -5.3334 8.1055 20 1 3.9106 -6.4541 8.5038 21 1 5.7851 -7.6909 7.5885 22 8 2.2923 -1.0895 0.0060 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5137 26 1 1.9665 2.1204 -0.0046 27 1 4.5212 1.2432 0.0076 28 1 4.5126 -2.5650 -0.4939 29 1 5.6059 -1.1605 -0.4939 30 1 5.5891 -0.3367 2.6887 31 1 6.7410 -1.6923 2.7471 32 1 6.7490 -0.5767 1.3600 33 1 3.9840 -5.0437 3.5340 34 1 3.3798 -7.5380 5.6652 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035699971.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:04 Heat of formation + Delta-G solvation = -66.692740 kcal Electronic energy + Delta-G solvation = -19930.932483 eV Core-core repulsion = 16637.389262 eV Total energy + Delta-G solvation = -3293.543221 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.55629 -41.44961 -39.18877 -37.24174 -36.02754 -34.11627 -33.51178 -33.06421 -30.10929 -28.16755 -27.32190 -25.91931 -23.70050 -22.73724 -21.26430 -20.79337 -20.03658 -18.41665 -17.90729 -17.82247 -17.19200 -16.85334 -16.57007 -15.86299 -15.69523 -15.43035 -14.89195 -14.54702 -14.25200 -13.99240 -13.78590 -13.72859 -13.70550 -13.53338 -13.25743 -13.02210 -12.92479 -12.56785 -12.54725 -12.09057 -12.05598 -11.65765 -10.84162 -10.29875 -10.06168 -9.89156 -9.25404 -8.66273 -6.11092 0.50797 0.66519 1.40632 1.45034 1.52195 1.59670 1.90850 2.03813 2.28640 2.34996 3.09352 3.14026 3.68534 3.86428 3.99631 4.12360 4.15427 4.36710 4.44029 4.53591 4.65851 4.77917 4.81630 4.88322 5.02956 5.12204 5.24950 5.26296 5.44407 5.65414 5.67453 5.99186 6.26091 6.32348 6.74002 6.94644 7.26526 7.78808 8.49897 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027906 B = 0.004545 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.144886 B = 6159.135773 C = 6645.608673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.034 4.034 3 C -0.224 4.224 4 C -0.187 4.187 5 C -0.061 4.061 6 C 0.190 3.810 7 N -0.584 5.584 8 C 0.074 3.926 9 C 0.510 3.490 10 O -0.564 6.564 11 C 0.392 3.608 12 O -0.598 6.598 13 N -0.513 5.513 14 C -0.343 4.343 15 H 0.102 0.898 16 C -0.006 4.006 17 N -0.899 5.899 18 Si 1.011 2.989 19 H -0.262 1.262 20 H -0.268 1.268 21 H -0.265 1.265 22 O -0.200 6.200 23 H 0.099 0.901 24 H 0.066 0.934 25 H 0.110 0.890 26 H 0.174 0.826 27 H 0.176 0.824 28 H 0.084 0.916 29 H 0.161 0.839 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.398 0.602 34 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.841 13.179 -10.190 16.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.084 4.084 3 C -0.242 4.242 4 C -0.206 4.206 5 C -0.111 4.111 6 C 0.069 3.931 7 N -0.317 5.317 8 C -0.067 4.067 9 C 0.295 3.705 10 O -0.442 6.442 11 C 0.177 3.823 12 O -0.488 6.488 13 N -0.147 5.147 14 C -0.472 4.472 15 H 0.120 0.880 16 C -0.210 4.210 17 N -0.536 5.536 18 Si 0.832 3.168 19 H -0.185 1.185 20 H -0.193 1.193 21 H -0.190 1.190 22 O -0.097 6.097 23 H 0.117 0.883 24 H 0.085 0.915 25 H 0.129 0.871 26 H 0.192 0.808 27 H 0.194 0.806 28 H 0.103 0.897 29 H 0.178 0.822 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.125 0.875 33 H 0.232 0.768 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.973 12.821 -10.075 16.335 hybrid contribution -0.348 -0.605 0.484 0.849 sum -1.321 12.216 -9.591 15.587 Atomic orbital electron populations 1.20478 0.83107 1.04699 1.04737 1.23365 0.95797 0.84248 1.05007 1.21938 0.92489 1.00230 1.09569 1.21963 0.99477 0.93008 1.06191 1.23195 0.83326 0.95848 1.08755 1.20217 0.92407 0.98306 0.82175 1.47795 1.42984 1.26972 1.13943 1.22406 0.91653 0.94569 0.98068 1.20370 0.81542 0.81377 0.87169 1.90688 1.32526 1.52766 1.68269 1.19473 0.88970 0.85406 0.88467 1.90454 1.40141 1.51890 1.66274 1.41692 1.38607 1.19528 1.14843 1.20040 1.27849 1.08045 0.91301 0.88032 1.26571 0.95077 0.94498 1.04870 1.69571 1.29875 1.13710 1.40483 0.84620 0.78553 0.78656 0.74952 1.18541 1.19268 1.19025 1.84056 1.17526 1.36598 1.71520 0.88275 0.91521 0.87131 0.80826 0.80629 0.89713 0.82191 0.93607 0.89122 0.87465 0.76750 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.40 10.42 71.24 0.74 -0.66 16 2 C -0.03 -0.93 7.32 24.83 0.18 -0.75 16 3 C -0.22 -5.34 10.81 22.19 0.24 -5.10 16 4 C -0.19 -4.59 10.81 22.19 0.24 -4.35 16 5 C -0.06 -1.84 6.90 24.83 0.17 -1.67 16 6 C 0.19 5.32 5.95 85.63 0.51 5.83 16 7 N -0.58 -20.66 2.86 -853.44 -2.44 -23.09 16 8 C 0.07 2.23 9.58 127.77 1.22 3.46 16 9 C 0.51 23.54 7.71 87.08 0.67 24.22 16 10 O -0.56 -28.45 16.09 -3.53 -0.06 -28.50 16 11 C 0.39 20.43 7.70 87.08 0.67 21.11 16 12 O -0.60 -31.69 12.69 -3.72 -0.05 -31.74 16 13 N -0.51 -28.73 5.24 -308.87 -1.62 -30.35 16 14 C -0.34 -19.39 9.67 84.35 0.82 -18.58 16 15 H 0.10 5.85 7.15 -2.91 -0.02 5.83 16 16 C -0.01 -0.33 5.51 85.14 0.47 0.14 16 17 N -0.90 -49.06 13.03 21.77 0.28 -48.77 16 18 Si 1.01 40.96 29.56 68.60 2.03 42.98 16 19 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 20 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 21 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 22 O -0.20 -7.06 10.65 -2.51 -0.03 -7.09 16 23 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 27 H 0.18 3.10 8.06 -2.91 -0.02 3.08 16 28 H 0.08 2.61 7.47 -2.39 -0.02 2.59 16 29 H 0.16 2.73 7.85 -2.39 -0.02 2.71 16 30 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.09 3.32 5.35 -2.54 -0.01 3.31 16 32 H 0.11 2.07 7.83 -2.38 -0.02 2.05 16 33 H 0.40 22.83 7.36 -92.71 -0.68 22.14 16 34 H 0.29 14.36 8.30 -92.70 -0.77 13.59 16 Total: -1.00 -72.35 303.83 4.51 -67.83 By element: Atomic # 1 Polarization: 34.64 SS G_CDS: 0.45 Total: 35.09 kcal Atomic # 6 Polarization: 17.71 SS G_CDS: 5.94 Total: 23.64 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -3.77 Total: -102.22 kcal Atomic # 8 Polarization: -67.20 SS G_CDS: -0.13 Total: -67.33 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.98 kcal Total: -72.35 4.51 -67.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035699971.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.141 kcal (2) G-P(sol) polarization free energy of solvation -72.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds