Wall clock time and date at job start Mon Mar 30 2020 04:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86796 * 120.00404 * 2 1 4 4 H 1.48508 * 109.46667 * 269.99877 * 3 2 1 5 5 H 1.48499 * 109.47216 * 29.99273 * 3 2 1 6 6 H 1.48499 * 109.47463 * 149.99870 * 3 2 1 7 7 C 1.38948 * 119.99418 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00361 * 359.97438 * 7 2 1 9 9 N 1.37099 * 119.99928 * 180.02562 * 7 2 1 10 10 C 1.34782 * 120.00136 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99696 * 0.02562 * 10 9 7 12 12 C 1.50691 * 120.00007 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47275 * 180.02562 * 12 10 9 14 14 C 1.46906 * 111.00164 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47095 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47106 * 179.97438 * 15 14 13 17 17 C 1.38271 * 119.98983 * 270.25730 * 16 15 14 18 18 C 1.38219 * 120.05279 * 180.25774 * 17 16 15 19 19 C 1.38227 * 120.02402 * 359.48356 * 18 17 16 20 20 C 1.38435 * 119.97416 * 0.26250 * 19 18 17 21 21 F 1.35097 * 120.02437 * 179.97438 * 20 19 18 22 22 C 1.38179 * 119.98470 * 90.00228 * 16 15 14 23 23 H 0.97001 * 119.99455 * 0.02562 * 1 2 3 24 24 H 0.96997 * 120.00134 * 359.97438 * 9 7 2 25 25 H 1.09002 * 109.47302 * 59.99943 * 12 10 9 26 26 H 1.09002 * 109.47703 * 300.00281 * 12 10 9 27 27 H 1.00901 * 110.99832 * 303.95211 * 13 12 10 28 28 H 1.09000 * 109.46839 * 59.99952 * 14 13 12 29 29 H 1.08994 * 109.47143 * 299.99969 * 14 13 12 30 30 H 1.09007 * 109.46882 * 60.00070 * 15 14 13 31 31 H 1.08994 * 109.47239 * 300.00082 * 15 14 13 32 32 H 1.08000 * 119.97479 * 0.02562 * 17 16 15 33 33 H 1.08002 * 119.99072 * 179.76964 * 18 17 16 34 34 H 1.07999 * 120.01289 * 180.23490 * 19 18 17 35 35 H 1.07994 * 120.01414 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4958 2.0462 -1.4002 5 1 1.4458 2.6527 0.6999 6 1 3.5458 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2035 0.0011 10 6 4.0536 -2.3708 0.0021 11 8 3.4470 -3.4212 0.0021 12 6 5.5605 -2.3709 0.0021 13 7 6.0501 -3.7559 0.0027 14 6 7.5187 -3.7952 0.0034 15 6 7.9899 -5.2508 0.0046 16 6 9.4963 -5.2911 0.0047 17 6 10.1874 -5.3053 -1.1929 18 6 11.5689 -5.3476 -1.1944 19 6 12.2617 -5.3651 0.0016 20 6 11.5711 -5.3456 1.2012 21 9 12.2471 -5.3632 2.3707 22 6 10.1867 -5.3086 1.2015 23 1 -0.4849 0.8401 -0.0004 24 1 3.8649 -0.3636 0.0007 25 1 5.9240 -1.8563 0.8916 26 1 5.9240 -1.8579 -0.8883 27 1 5.6746 -4.2718 0.7844 28 1 7.8952 -3.2909 0.8934 29 1 7.8960 -3.2915 -0.8866 30 1 7.6133 -5.7554 -0.8852 31 1 7.6126 -5.7540 0.8948 32 1 9.6471 -5.2870 -2.1279 33 1 12.1075 -5.3624 -2.1305 34 1 13.3412 -5.3943 0.0002 35 1 9.6469 -5.2937 2.1367 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036779592.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:41 Heat of formation + Delta-G solvation = -82.464612 kcal Electronic energy + Delta-G solvation = -18549.425594 eV Core-core repulsion = 15267.571242 eV Total energy + Delta-G solvation = -3281.854351 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.90097 -40.37766 -40.08508 -37.16869 -35.94120 -33.87761 -33.64701 -31.49626 -30.07129 -27.79573 -25.63246 -23.71918 -23.55905 -22.06364 -21.27543 -20.26453 -18.22220 -17.81218 -17.45616 -17.06959 -17.02055 -16.64692 -16.59644 -15.80648 -15.47621 -15.32809 -14.86569 -14.73031 -14.35400 -14.26450 -13.91202 -13.61773 -13.57195 -13.16989 -12.89780 -12.64441 -12.47814 -12.40634 -11.98865 -11.95944 -11.84289 -11.51300 -10.46045 -10.25004 -9.90170 -9.61794 -9.34369 -8.41360 -6.02445 0.19749 0.26379 1.30728 1.36237 1.45096 1.95182 2.23356 2.58222 2.76756 3.14863 3.24820 3.43090 3.80628 3.91557 4.13032 4.16450 4.21275 4.26838 4.34651 4.44587 4.47586 4.56487 4.66342 4.92547 4.95585 5.14326 5.17171 5.20891 5.40150 5.52678 5.60905 5.89965 5.96957 6.03744 6.37782 6.59627 6.87816 7.39499 7.95971 8.76328 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.037990 B = 0.002838 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.857972 B = 9863.854729 C =10049.640128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.966 3.034 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.231 1.231 7 C -0.330 4.330 8 H 0.055 0.945 9 N -0.591 5.591 10 C 0.448 3.552 11 O -0.615 6.615 12 C 0.062 3.938 13 N -0.687 5.687 14 C 0.070 3.930 15 C -0.075 4.075 16 C -0.053 4.053 17 C -0.127 4.127 18 C -0.086 4.086 19 C -0.163 4.163 20 C 0.075 3.925 21 F -0.153 7.153 22 C -0.162 4.162 23 H 0.279 0.721 24 H 0.390 0.610 25 H 0.075 0.925 26 H 0.115 0.885 27 H 0.345 0.655 28 H 0.037 0.963 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.147 0.853 33 H 0.161 0.839 34 H 0.149 0.851 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.946 -5.010 -1.080 28.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.214 4.214 3 Si 0.786 3.214 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.154 1.154 7 C -0.459 4.459 8 H 0.073 0.927 9 N -0.233 5.233 10 C 0.236 3.764 11 O -0.499 6.499 12 C -0.071 4.071 13 N -0.320 5.320 14 C -0.058 4.058 15 C -0.113 4.113 16 C -0.054 4.054 17 C -0.145 4.145 18 C -0.104 4.104 19 C -0.181 4.181 20 C 0.056 3.944 21 F -0.132 7.132 22 C -0.181 4.181 23 H 0.089 0.911 24 H 0.226 0.774 25 H 0.093 0.907 26 H 0.133 0.867 27 H 0.163 0.837 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.165 0.835 33 H 0.178 0.822 34 H 0.167 0.833 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 27.320 -5.677 -1.711 27.956 hybrid contribution -0.096 1.053 1.363 1.725 sum 27.224 -4.625 -0.348 27.616 Atomic orbital electron populations 1.69812 1.08162 1.29269 1.50278 1.26135 0.96487 1.02769 0.96037 0.85349 0.79449 0.76635 0.79983 1.18078 1.20056 1.15448 1.19017 0.81532 0.94949 1.50395 0.92675 1.42038 1.05819 1.07643 1.67769 1.21002 0.91028 0.83295 0.81098 1.90544 1.71412 1.32811 1.55132 1.21629 0.89457 0.91953 1.04022 1.60081 1.08298 1.12024 1.51550 1.21966 0.85786 0.96520 1.01574 1.20523 0.89771 0.96679 1.04333 1.19727 0.95643 0.97554 0.92497 1.21475 0.94739 0.99980 0.98334 1.21363 0.94046 0.96665 0.98307 1.21430 1.01844 1.03763 0.91100 1.17982 0.90496 1.04320 0.81599 1.91468 1.80468 1.94184 1.47032 1.21182 0.92353 1.04526 0.99996 0.91128 0.77426 0.90684 0.86670 0.83661 0.94449 0.89857 0.89468 0.90640 0.83549 0.82163 0.83278 0.84679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.45 13.96 21.66 0.30 -56.15 16 2 C -0.02 -0.87 5.50 84.92 0.47 -0.41 16 3 Si 0.97 38.62 27.74 68.60 1.90 40.52 16 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.23 -7.74 6.52 99.48 0.65 -7.09 16 7 C -0.33 -19.37 10.16 84.04 0.85 -18.52 16 8 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 9 N -0.59 -27.82 5.09 -306.99 -1.56 -29.39 16 10 C 0.45 20.15 7.82 87.65 0.69 20.83 16 11 O -0.61 -34.10 15.78 -3.07 -0.05 -34.15 16 12 C 0.06 1.85 6.17 85.56 0.53 2.38 16 13 N -0.69 -19.46 6.13 -517.95 -3.17 -22.64 16 14 C 0.07 1.39 5.67 86.30 0.49 1.88 16 15 C -0.08 -1.32 5.60 29.85 0.17 -1.16 16 16 C -0.05 -0.88 5.13 -19.87 -0.10 -0.98 16 17 C -0.13 -1.73 9.70 22.27 0.22 -1.51 16 18 C -0.09 -1.00 10.04 22.26 0.22 -0.78 16 19 C -0.16 -2.30 10.03 22.31 0.22 -2.08 16 20 C 0.08 1.38 7.30 22.38 0.16 1.54 16 21 F -0.15 -3.18 17.27 44.97 0.78 -2.41 16 22 C -0.16 -2.89 9.68 22.31 0.22 -2.67 16 23 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 24 H 0.39 15.10 5.76 -92.71 -0.53 14.57 16 25 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 27 H 0.34 10.44 8.43 -89.69 -0.76 9.68 16 28 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.09 1.57 8.09 -2.38 -0.02 1.55 16 31 H 0.07 1.33 8.09 -2.39 -0.02 1.31 16 32 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 34 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -75.54 310.35 2.10 -73.45 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: -0.23 Total: 32.23 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 4.13 Total: -1.47 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -4.43 Total: -108.18 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -0.05 Total: -34.15 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.78 Total: -2.41 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 1.90 Total: 40.52 kcal Total: -75.54 2.10 -73.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036779592.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.018 kcal (2) G-P(sol) polarization free energy of solvation -75.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds