Wall clock time and date at job start Mon Mar 30 2020 05:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46904 * 2 1 4 4 N 1.46499 * 109.46880 * 119.99473 * 2 1 3 5 5 N 1.40081 * 126.10006 * 300.18689 * 4 2 1 6 6 C 1.30852 * 108.42117 * 180.26739 * 5 4 2 7 7 C 1.39691 * 108.45853 * 359.74269 * 6 5 4 8 8 C 1.35854 * 126.09630 * 119.99970 * 4 2 1 9 9 N 1.39196 * 126.27093 * 0.02562 * 8 4 2 10 10 C 1.34784 * 119.99969 * 179.71297 * 9 8 4 11 11 O 1.21480 * 119.99599 * 359.72889 * 10 9 8 12 12 C 1.48688 * 119.99949 * 179.72625 * 10 9 8 13 13 O 1.21516 * 120.00365 * 0.02562 * 12 10 9 14 14 N 1.34774 * 119.99955 * 180.02562 * 12 10 9 15 15 C 1.36121 * 120.00174 * 180.02562 * 14 12 10 16 16 H 1.07991 * 120.00111 * 359.97438 * 15 14 12 17 17 C 1.39585 * 119.99957 * 180.02562 * 15 14 12 18 18 N 1.31019 * 120.00267 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99908 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47328 * 90.00015 * 19 17 15 21 21 H 1.48505 * 109.47148 * 210.00004 * 19 17 15 22 22 H 1.48498 * 109.46978 * 329.99618 * 19 17 15 23 23 H 1.08995 * 109.47218 * 300.00755 * 1 2 3 24 24 H 1.09003 * 109.46618 * 60.00246 * 1 2 3 25 25 H 1.08996 * 109.47144 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47218 * 239.99245 * 2 1 3 27 27 H 1.08990 * 109.47113 * 59.99757 * 3 2 1 28 28 H 1.09001 * 109.46474 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46824 * 299.99622 * 3 2 1 30 30 H 1.07995 * 125.76836 * 179.71950 * 6 5 4 31 31 H 1.08003 * 126.07117 * 179.97438 * 7 6 5 32 32 H 0.97000 * 120.00636 * 359.43980 * 9 8 4 33 33 H 0.97005 * 119.99841 * 0.02562 * 14 12 10 34 34 H 0.97001 * 119.99874 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 7 1.7569 -0.3270 2.5236 6 6 2.3655 -1.1755 3.3122 7 6 3.0323 -2.1143 2.5214 8 6 2.8026 -1.7996 1.2161 9 7 3.2878 -2.4851 0.1060 10 6 4.0647 -3.5738 0.2728 11 8 4.3454 -3.9539 1.3919 12 6 4.5780 -4.3095 -0.9129 13 8 4.2975 -3.9291 -2.0324 14 7 5.3544 -5.3985 -0.7462 15 6 5.8248 -6.0718 -1.8317 16 1 5.5755 -5.7336 -2.8265 17 6 6.6285 -7.1999 -1.6589 18 7 6.9305 -7.6105 -0.4519 19 14 7.2745 -8.1234 -3.1486 20 1 8.5866 -7.5567 -3.5516 21 1 7.4393 -9.5594 -2.8076 22 1 6.3113 -7.9885 -4.2707 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 2.3544 -1.1534 4.3919 31 1 3.6252 -2.9423 2.8810 32 1 3.0636 -2.1816 -0.7876 33 1 5.5780 -5.7025 0.1475 34 1 7.4887 -8.3947 -0.3319 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037242665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:47 Heat of formation + Delta-G solvation = 9.536203 kcal Electronic energy + Delta-G solvation = -19775.741984 eV Core-core repulsion = 16517.797049 eV Total energy + Delta-G solvation = -3257.944935 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.31846 -39.51143 -37.40787 -35.70226 -34.93119 -34.03248 -31.58248 -29.98974 -28.82936 -27.46443 -26.05999 -23.72125 -22.97955 -21.16919 -19.84411 -19.22279 -18.48667 -18.00717 -16.45414 -15.92256 -15.54847 -15.04955 -14.79268 -14.60080 -14.50849 -14.03150 -13.73162 -13.15334 -13.14179 -12.82926 -12.74150 -12.38550 -12.15541 -11.90109 -11.54797 -11.42880 -11.30185 -10.76066 -10.73258 -10.60188 -10.50912 -10.20038 -9.86052 -8.82460 -8.48520 -8.39006 -7.85713 -6.82775 -4.13825 1.72401 2.23037 2.46149 3.04757 3.07734 3.12650 3.19094 3.23279 3.93116 4.11053 4.34096 4.67114 4.73924 4.82146 5.03442 5.04540 5.35311 5.40975 5.47300 5.54864 5.66499 5.80850 5.86106 5.96632 5.99262 6.21358 6.35754 6.96085 7.15828 7.16763 7.40343 7.62401 7.94638 8.11234 8.35351 8.78368 9.12429 9.66214 10.31198 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.035875 B = 0.004167 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.308360 B = 6717.863126 C = 7312.396147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.155 3.845 3 C -0.159 4.159 4 N -0.387 5.387 5 N -0.297 5.297 6 C 0.056 3.944 7 C -0.287 4.287 8 C 0.315 3.685 9 N -0.634 5.634 10 C 0.519 3.481 11 O -0.510 6.510 12 C 0.391 3.609 13 O -0.598 6.598 14 N -0.487 5.487 15 C -0.304 4.304 16 H 0.116 0.884 17 C 0.033 3.967 18 N -0.860 5.860 19 Si 0.942 3.058 20 H -0.272 1.272 21 H -0.278 1.278 22 H -0.263 1.263 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.183 0.817 31 H 0.173 0.827 32 H 0.418 0.582 33 H 0.406 0.594 34 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.846 11.066 1.959 13.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.053 3.947 3 C -0.216 4.216 4 N -0.177 5.177 5 N -0.119 5.119 6 C -0.130 4.130 7 C -0.318 4.318 8 C 0.095 3.905 9 N -0.283 5.283 10 C 0.305 3.695 11 O -0.383 6.383 12 C 0.175 3.825 13 O -0.487 6.487 14 N -0.120 5.120 15 C -0.434 4.434 16 H 0.133 0.867 17 C -0.175 4.175 18 N -0.497 5.497 19 Si 0.767 3.233 20 H -0.197 1.197 21 H -0.203 1.203 22 H -0.187 1.187 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.112 0.888 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.200 0.800 31 H 0.190 0.810 32 H 0.255 0.745 33 H 0.242 0.758 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.443 11.901 1.911 14.716 hybrid contribution 0.851 -1.193 -0.524 1.556 sum -7.592 10.708 1.387 13.199 Atomic orbital electron populations 1.22116 0.93233 1.03038 1.03268 1.21230 0.95714 0.94017 0.83753 1.22114 1.01873 0.94390 1.03264 1.48952 1.41287 1.21478 1.05939 1.77278 1.25283 1.23939 0.85349 1.23698 0.96084 0.93217 0.99958 1.21710 1.13352 1.07529 0.89232 1.18272 0.94547 0.88260 0.89459 1.42628 1.49762 1.28169 1.07746 1.20885 0.77900 0.79665 0.91057 1.90648 1.56080 1.65627 1.25938 1.18442 0.89720 0.86651 0.87647 1.90603 1.64350 1.69689 1.24095 1.41556 1.38240 1.21176 1.11077 1.19955 1.27332 1.07314 0.88830 0.86653 1.25658 0.96218 0.97006 0.98627 1.69480 1.33854 1.24600 1.21783 0.85671 0.79441 0.78087 0.80117 1.19713 1.20349 1.18748 0.91005 0.90781 0.92057 0.88797 0.91017 0.92052 0.90768 0.80048 0.80994 0.74471 0.75813 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.45 37.16 0.35 -1.19 16 2 C 0.15 1.74 3.70 -67.93 -0.25 1.49 16 3 C -0.16 -1.54 9.46 37.16 0.35 -1.18 16 4 N -0.39 -5.69 3.30 -53.80 -0.18 -5.87 16 5 N -0.30 -4.48 12.42 30.59 0.38 -4.10 16 6 C 0.06 0.82 12.00 -17.43 -0.21 0.61 16 7 C -0.29 -4.91 9.65 -39.76 -0.38 -5.29 16 8 C 0.31 5.36 7.68 -152.86 -1.17 4.18 16 9 N -0.63 -11.23 5.40 -11.97 -0.06 -11.29 16 10 C 0.52 10.92 7.83 -11.94 -0.09 10.83 16 11 O -0.51 -11.28 13.59 5.38 0.07 -11.21 16 12 C 0.39 9.37 7.81 -11.94 -0.09 9.28 16 13 O -0.60 -15.22 16.03 5.35 0.09 -15.14 16 14 N -0.49 -12.36 5.25 -11.63 -0.06 -12.42 16 15 C -0.30 -7.96 9.67 -15.15 -0.15 -8.10 16 16 H 0.12 3.08 7.15 -52.49 -0.38 2.70 16 17 C 0.03 0.82 5.51 -17.40 -0.10 0.73 16 18 N -0.86 -21.95 13.03 55.53 0.72 -21.23 16 19 Si 0.94 19.11 29.56 -169.99 -5.02 14.09 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 0.98 6.84 -51.93 -0.36 0.62 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.18 1.95 8.06 -52.49 -0.42 1.53 16 31 H 0.17 3.18 5.83 -52.48 -0.31 2.88 16 32 H 0.42 6.66 7.01 -40.82 -0.29 6.38 16 33 H 0.41 10.33 7.35 -40.82 -0.30 10.03 16 34 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 LS Contribution 302.03 15.07 4.55 4.55 Total: -1.00 -29.55 302.03 -4.97 -34.53 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -3.72 Total: 16.75 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: -1.74 Total: 11.35 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.80 Total: -54.92 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: 0.16 Total: -26.35 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.55 -4.97 -34.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037242665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.063 kcal (2) G-P(sol) polarization free energy of solvation -29.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds