Wall clock time and date at job start Mon Mar 30 2020 05:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46904 * 2 1 4 4 N 1.46499 * 109.46880 * 119.99473 * 2 1 3 5 5 N 1.40081 * 126.10006 * 300.18689 * 4 2 1 6 6 C 1.30852 * 108.42117 * 180.26739 * 5 4 2 7 7 C 1.39691 * 108.45853 * 359.74269 * 6 5 4 8 8 C 1.35854 * 126.09630 * 119.99970 * 4 2 1 9 9 N 1.39196 * 126.27093 * 0.02562 * 8 4 2 10 10 C 1.34784 * 119.99969 * 179.71297 * 9 8 4 11 11 O 1.21480 * 119.99599 * 359.72889 * 10 9 8 12 12 C 1.48688 * 119.99949 * 179.72625 * 10 9 8 13 13 O 1.21516 * 120.00365 * 0.02562 * 12 10 9 14 14 N 1.34774 * 119.99955 * 180.02562 * 12 10 9 15 15 C 1.36121 * 120.00174 * 180.02562 * 14 12 10 16 16 H 1.07991 * 120.00111 * 359.97438 * 15 14 12 17 17 C 1.39585 * 119.99957 * 180.02562 * 15 14 12 18 18 N 1.31019 * 120.00267 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99908 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47328 * 90.00015 * 19 17 15 21 21 H 1.48505 * 109.47148 * 210.00004 * 19 17 15 22 22 H 1.48498 * 109.46978 * 329.99618 * 19 17 15 23 23 H 1.08995 * 109.47218 * 300.00755 * 1 2 3 24 24 H 1.09003 * 109.46618 * 60.00246 * 1 2 3 25 25 H 1.08996 * 109.47144 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47218 * 239.99245 * 2 1 3 27 27 H 1.08990 * 109.47113 * 59.99757 * 3 2 1 28 28 H 1.09001 * 109.46474 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46824 * 299.99622 * 3 2 1 30 30 H 1.07995 * 125.76836 * 179.71950 * 6 5 4 31 31 H 1.08003 * 126.07117 * 179.97438 * 7 6 5 32 32 H 0.97000 * 120.00636 * 359.43980 * 9 8 4 33 33 H 0.97005 * 119.99841 * 0.02562 * 14 12 10 34 34 H 0.97001 * 119.99874 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 7 1.7569 -0.3270 2.5236 6 6 2.3655 -1.1755 3.3122 7 6 3.0323 -2.1143 2.5214 8 6 2.8026 -1.7996 1.2161 9 7 3.2878 -2.4851 0.1060 10 6 4.0647 -3.5738 0.2728 11 8 4.3454 -3.9539 1.3919 12 6 4.5780 -4.3095 -0.9129 13 8 4.2975 -3.9291 -2.0324 14 7 5.3544 -5.3985 -0.7462 15 6 5.8248 -6.0718 -1.8317 16 1 5.5755 -5.7336 -2.8265 17 6 6.6285 -7.1999 -1.6589 18 7 6.9305 -7.6105 -0.4519 19 14 7.2745 -8.1234 -3.1486 20 1 8.5866 -7.5567 -3.5516 21 1 7.4393 -9.5594 -2.8076 22 1 6.3113 -7.9885 -4.2707 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 2.3544 -1.1534 4.3919 31 1 3.6252 -2.9423 2.8810 32 1 3.0636 -2.1816 -0.7876 33 1 5.5780 -5.7025 0.1475 34 1 7.4887 -8.3947 -0.3319 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037242665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:47 Heat of formation + Delta-G solvation = -10.749518 kcal Electronic energy + Delta-G solvation = -19776.621639 eV Core-core repulsion = 16517.797049 eV Total energy + Delta-G solvation = -3258.824590 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.63881 -41.17895 -39.24853 -36.78740 -36.54813 -35.75569 -33.52523 -31.13656 -30.16698 -28.23209 -27.92565 -25.43947 -24.03235 -22.64652 -21.11904 -20.88065 -20.31166 -19.32448 -18.08583 -17.65900 -17.04463 -16.74172 -16.02714 -16.02311 -15.76092 -15.60833 -14.97952 -14.82220 -14.72428 -14.03305 -13.90762 -13.69866 -13.12900 -13.08480 -12.98723 -12.61983 -12.44391 -12.40567 -12.21551 -12.20386 -12.09629 -11.70006 -11.52532 -10.37089 -10.33138 -9.98888 -9.22027 -8.71089 -6.14752 0.14315 0.90833 1.00950 1.43964 1.48306 1.58246 1.84359 1.87742 2.25956 2.31112 2.98697 3.10402 3.40436 3.86369 3.90586 3.96710 4.05390 4.28494 4.47168 4.66606 4.71014 4.76732 4.77696 4.86547 5.06657 5.19403 5.21020 5.22107 5.61041 5.74110 5.84054 6.00902 6.25779 6.63169 6.72904 6.86152 7.17971 7.70648 8.44037 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.035875 B = 0.004167 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.308360 B = 6717.863126 C = 7312.396147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.139 3.861 3 C -0.152 4.152 4 N -0.379 5.379 5 N -0.298 5.298 6 C 0.062 3.938 7 C -0.303 4.303 8 C 0.293 3.707 9 N -0.618 5.618 10 C 0.528 3.472 11 O -0.523 6.523 12 C 0.391 3.609 13 O -0.614 6.614 14 N -0.498 5.498 15 C -0.342 4.342 16 H 0.104 0.896 17 C -0.001 4.001 18 N -0.888 5.888 19 Si 1.011 2.989 20 H -0.264 1.264 21 H -0.267 1.267 22 H -0.262 1.262 23 H 0.065 0.935 24 H 0.103 0.897 25 H 0.049 0.951 26 H 0.102 0.898 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.104 0.896 30 H 0.218 0.782 31 H 0.156 0.844 32 H 0.426 0.574 33 H 0.403 0.597 34 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.474 11.963 1.497 14.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.039 3.961 3 C -0.209 4.209 4 N -0.169 5.169 5 N -0.120 5.120 6 C -0.124 4.124 7 C -0.335 4.335 8 C 0.073 3.927 9 N -0.267 5.267 10 C 0.312 3.688 11 O -0.397 6.397 12 C 0.176 3.824 13 O -0.505 6.505 14 N -0.131 5.131 15 C -0.471 4.471 16 H 0.122 0.878 17 C -0.206 4.206 18 N -0.525 5.525 19 Si 0.831 3.169 20 H -0.189 1.189 21 H -0.192 1.192 22 H -0.186 1.186 23 H 0.084 0.916 24 H 0.122 0.878 25 H 0.068 0.932 26 H 0.120 0.880 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.122 0.878 30 H 0.234 0.766 31 H 0.173 0.827 32 H 0.265 0.735 33 H 0.238 0.762 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.098 12.839 1.451 15.803 hybrid contribution 0.955 -1.342 -0.315 1.677 sum -8.143 11.498 1.135 14.135 Atomic orbital electron populations 1.22085 0.91770 1.02630 1.04463 1.21692 0.96944 0.94788 0.82699 1.22084 1.01064 0.93323 1.04461 1.49276 1.40241 1.20575 1.06767 1.77262 1.25120 1.23985 0.85609 1.24185 0.94832 0.91860 1.01500 1.21753 1.13823 1.07888 0.89988 1.18295 0.95895 0.89486 0.89020 1.42278 1.48665 1.27086 1.08646 1.20225 0.78449 0.80357 0.89757 1.90658 1.56837 1.66302 1.25897 1.18903 0.88875 0.86250 0.88369 1.90573 1.64683 1.70048 1.25146 1.41623 1.38894 1.21782 1.10790 1.20057 1.29515 1.08955 0.88607 0.87842 1.26571 0.95475 0.96988 1.01583 1.69540 1.34179 1.25184 1.23561 0.84677 0.78788 0.77026 0.76370 1.18916 1.19160 1.18627 0.91582 0.87793 0.93225 0.88014 0.91592 0.93227 0.87779 0.76552 0.82660 0.73491 0.76190 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.45 71.98 0.68 -1.91 16 2 C 0.14 2.86 3.70 44.99 0.17 3.03 16 3 C -0.15 -2.59 9.46 71.98 0.68 -1.91 16 4 N -0.38 -10.64 3.30 -324.12 -1.07 -11.71 16 5 N -0.30 -8.48 12.42 -57.14 -0.71 -9.19 16 6 C 0.06 1.70 12.00 85.19 1.02 2.72 16 7 C -0.30 -10.23 9.65 22.15 0.21 -10.02 16 8 C 0.29 9.80 7.68 131.25 1.01 10.81 16 9 N -0.62 -21.73 5.40 -310.09 -1.67 -23.40 16 10 C 0.53 22.46 7.83 87.04 0.68 23.14 16 11 O -0.52 -23.54 13.59 -3.65 -0.05 -23.58 16 12 C 0.39 19.10 7.81 87.04 0.68 19.78 16 13 O -0.61 -31.64 16.03 -3.77 -0.06 -31.70 16 14 N -0.50 -25.95 5.25 -309.01 -1.62 -27.57 16 15 C -0.34 -18.27 9.67 84.35 0.82 -17.45 16 16 H 0.10 5.66 7.15 -2.92 -0.02 5.64 16 17 C 0.00 -0.03 5.51 85.14 0.47 0.44 16 18 N -0.89 -45.56 13.03 21.77 0.28 -45.28 16 19 Si 1.01 38.74 29.56 68.60 2.03 40.77 16 20 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 21 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 22 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 23 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.10 1.92 6.84 -2.39 -0.02 1.91 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.22 4.09 8.06 -2.91 -0.02 4.07 16 31 H 0.16 5.81 5.83 -2.91 -0.02 5.79 16 32 H 0.43 13.36 7.01 -92.71 -0.65 12.71 16 33 H 0.40 21.16 7.35 -92.70 -0.68 20.48 16 34 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 Total: -1.00 -63.60 302.03 3.37 -60.23 By element: Atomic # 1 Polarization: 42.98 SS G_CDS: -0.17 Total: 42.81 kcal Atomic # 6 Polarization: 22.22 SS G_CDS: 6.42 Total: 28.64 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -4.79 Total: -117.15 kcal Atomic # 8 Polarization: -55.18 SS G_CDS: -0.11 Total: -55.29 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -63.60 3.37 -60.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037242665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.476 kcal (2) G-P(sol) polarization free energy of solvation -63.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds