Wall clock time and date at job start Mon Mar 30 2020 05:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86795 * 120.00001 * 2 1 4 4 H 1.48501 * 109.47411 * 270.00122 * 3 2 1 5 5 H 1.48507 * 109.46831 * 30.00145 * 3 2 1 6 6 H 1.48502 * 109.47324 * 149.99611 * 3 2 1 7 7 C 1.39591 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99590 * 180.02562 * 7 2 1 9 9 N 1.36118 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.34768 * 119.99891 * 180.02562 * 9 7 2 11 11 O 1.21502 * 120.00503 * 359.97438 * 10 9 7 12 12 C 1.48834 * 120.00051 * 179.97438 * 10 9 7 13 13 O 1.21445 * 119.99627 * 359.97438 * 12 10 9 14 14 N 1.34770 * 120.00465 * 179.97438 * 12 10 9 15 15 C 1.46497 * 120.00315 * 179.97438 * 14 12 10 16 16 C 1.53002 * 109.47199 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47060 * 180.02562 * 16 15 14 18 18 N 1.46501 * 109.47323 * 180.02562 * 17 16 15 19 19 C 1.36890 * 126.39537 * 270.03108 * 18 17 16 20 20 C 1.34669 * 106.81617 * 179.97438 * 19 18 17 21 21 N 1.34134 * 108.02026 * 0.02562 * 20 19 18 22 22 C 1.30493 * 109.25480 * 0.02562 * 21 20 19 23 23 H 0.96997 * 120.00154 * 0.02562 * 1 2 3 24 24 H 0.96998 * 119.99499 * 359.97438 * 9 7 2 25 25 H 0.97006 * 119.99803 * 0.02562 * 14 12 10 26 26 H 1.09002 * 109.47142 * 60.00589 * 15 14 12 27 27 H 1.08998 * 109.47581 * 300.00052 * 15 14 12 28 28 H 1.09006 * 109.47212 * 60.00173 * 16 15 14 29 29 H 1.09002 * 109.47266 * 300.00402 * 16 15 14 30 30 H 1.09002 * 109.47343 * 60.00395 * 17 16 15 31 31 H 1.08998 * 109.47519 * 299.99774 * 17 16 15 32 32 H 1.07996 * 126.59258 * 359.97438 * 19 18 17 33 33 H 1.08002 * 125.99042 * 180.26007 * 20 19 18 34 34 H 1.08006 * 125.64594 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 2.4916 2.0465 -1.4001 5 1 1.4415 2.6526 0.7001 6 1 3.5417 1.4402 0.7001 7 6 2.0081 -1.2089 0.0005 8 1 3.0881 -1.2089 0.0010 9 7 1.3275 -2.3878 0.0005 10 6 2.0014 -3.5549 0.0016 11 8 3.2164 -3.5549 0.0021 12 6 1.2573 -4.8438 0.0022 13 8 0.0428 -4.8438 0.0022 14 7 1.9311 -6.0110 0.0027 15 6 1.1986 -7.2797 0.0038 16 6 2.1929 -8.4426 0.0049 17 6 1.4279 -9.7676 0.0054 18 7 2.3799 -10.8812 0.0070 19 6 2.9089 -11.4991 -1.0940 20 6 3.7333 -12.4629 -0.6413 21 7 3.7079 -12.4347 0.6995 22 6 2.8987 -11.4904 1.0948 23 1 -0.4850 0.8400 -0.0004 24 1 0.3575 -2.3877 0.0005 25 1 2.9011 -6.0110 0.0031 26 1 0.5717 -7.3381 -0.8860 27 1 0.5723 -7.3369 0.8940 28 1 2.8196 -8.3841 0.8948 29 1 2.8196 -8.3857 -0.8851 30 1 0.8016 -9.8260 -0.8848 31 1 0.8010 -9.8249 0.8952 32 1 2.7045 -11.2597 -2.1270 33 1 4.3160 -13.1377 -1.2509 34 1 2.6812 -11.2369 2.1219 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037244124.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:04 Heat of formation + Delta-G solvation = -15.139882 kcal Electronic energy + Delta-G solvation = -18744.739868 eV Core-core repulsion = 15485.724898 eV Total energy + Delta-G solvation = -3259.014970 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.24291 -39.59158 -37.43044 -36.21212 -34.54664 -33.85063 -31.51726 -30.93463 -29.61862 -26.69519 -25.49884 -23.12921 -21.89093 -21.56049 -21.10893 -19.50530 -18.39760 -17.74416 -16.99015 -16.02186 -15.97471 -15.35908 -15.04785 -14.80936 -14.46023 -14.22339 -14.04275 -13.94423 -13.45741 -13.10223 -12.86159 -12.79102 -12.34051 -11.96949 -11.82055 -11.36533 -11.23406 -10.61634 -10.49624 -10.42505 -10.20675 -9.89276 -9.77621 -8.90942 -8.75685 -8.36011 -8.28854 -6.73156 -4.05369 1.81243 2.35192 2.47013 2.96962 3.10872 3.12003 3.17180 3.32189 4.00592 4.19233 4.23562 4.48220 4.51018 4.53271 4.72497 4.91468 4.95000 5.03146 5.12884 5.22105 5.36453 5.45406 5.67109 5.76896 5.98873 6.02138 6.49957 6.61456 6.92549 7.25293 7.58456 7.77736 7.84952 8.24539 8.52229 8.89517 9.24952 9.78278 10.41572 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.057552 B = 0.002755 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.396772 B =10162.371671 C =10452.995499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.031 3.969 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.306 4.306 8 H 0.113 0.887 9 N -0.497 5.497 10 C 0.392 3.608 11 O -0.598 6.598 12 C 0.514 3.486 13 O -0.546 6.546 14 N -0.717 5.717 15 C 0.124 3.876 16 C -0.148 4.148 17 C 0.108 3.892 18 N -0.458 5.458 19 C -0.055 4.055 20 C -0.033 4.033 21 N -0.498 5.498 22 C 0.181 3.819 23 H 0.281 0.719 24 H 0.405 0.595 25 H 0.411 0.589 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.173 0.827 33 H 0.168 0.832 34 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.961 -17.165 -0.994 17.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.176 4.176 3 Si 0.765 3.235 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.437 4.437 8 H 0.131 0.869 9 N -0.131 5.131 10 C 0.176 3.824 11 O -0.487 6.487 12 C 0.299 3.701 13 O -0.423 6.423 14 N -0.371 5.371 15 C 0.000 4.000 16 C -0.187 4.187 17 C -0.015 4.015 18 N -0.140 5.140 19 C -0.188 4.188 20 C -0.181 4.181 21 N -0.216 5.216 22 C -0.101 4.101 23 H 0.092 0.908 24 H 0.240 0.760 25 H 0.247 0.753 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.191 0.809 33 H 0.185 0.815 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 1.039 -17.426 -0.475 17.464 hybrid contribution -0.270 1.324 -0.592 1.475 sum 0.768 -16.102 -1.067 16.156 Atomic orbital electron populations 1.69479 1.06549 1.29469 1.45050 1.25607 0.95644 1.00545 0.95798 0.85709 0.79388 0.79565 0.78839 1.19843 1.20465 1.18856 1.19898 0.94012 0.81847 1.47908 0.86922 1.41568 1.10507 1.04250 1.56796 1.18907 0.87814 0.84167 0.91513 1.90586 1.12856 1.86564 1.58717 1.20719 0.87480 0.85882 0.76042 1.90694 1.14052 1.88114 1.49410 1.45603 1.11183 1.04482 1.75871 1.21133 0.94120 0.82048 1.02748 1.22168 0.99157 0.92789 1.04570 1.21818 0.90458 0.83810 1.05423 1.45612 1.34632 1.26733 1.07050 1.22782 1.03257 0.99875 0.92916 1.22318 1.03071 1.01447 0.91274 1.70297 1.19381 1.19742 1.12223 1.25043 0.97206 0.94060 0.93786 0.90837 0.75986 0.75319 0.91222 0.91167 0.90107 0.90190 0.88463 0.88226 0.80935 0.81472 0.77957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.85 13.03 55.53 0.72 -22.13 16 2 C 0.03 0.80 5.51 -17.40 -0.10 0.70 16 3 Si 0.94 19.73 29.56 -169.99 -5.02 14.71 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.31 -8.29 9.67 -15.15 -0.15 -8.44 16 8 H 0.11 3.12 7.15 -52.48 -0.38 2.74 16 9 N -0.50 -13.04 5.25 -11.59 -0.06 -13.10 16 10 C 0.39 9.61 7.82 -11.88 -0.09 9.52 16 11 O -0.60 -15.70 16.03 5.36 0.09 -15.61 16 12 C 0.51 10.63 7.87 -11.88 -0.09 10.54 16 13 O -0.55 -12.19 16.47 5.41 0.09 -12.10 16 14 N -0.72 -11.13 5.55 -60.93 -0.34 -11.47 16 15 C 0.12 1.36 5.67 -4.04 -0.02 1.34 16 16 C -0.15 -1.15 5.65 -26.73 -0.15 -1.30 16 17 C 0.11 0.65 6.15 -4.04 -0.02 0.63 16 18 N -0.46 -3.76 2.75 -118.58 -0.33 -4.08 16 19 C -0.06 -0.47 11.58 -16.56 -0.19 -0.66 16 20 C -0.03 -0.34 11.87 -17.81 -0.21 -0.55 16 21 N -0.50 -5.95 11.25 -14.66 -0.16 -6.11 16 22 C 0.18 1.70 12.56 -90.38 -1.14 0.57 16 23 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 24 H 0.40 10.67 7.35 -40.82 -0.30 10.37 16 25 H 0.41 6.09 7.93 -40.82 -0.32 5.77 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.20 1.27 8.06 -52.48 -0.42 0.84 16 LS Contribution 309.31 15.07 4.66 4.66 Total: -1.00 -33.15 309.31 -6.46 -39.60 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -3.94 Total: 13.28 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: -2.17 Total: 12.35 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.17 Total: -56.89 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: 0.18 Total: -27.71 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.15 -6.46 -39.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037244124.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.464 kcal (2) G-P(sol) polarization free energy of solvation -33.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds