Wall clock time and date at job start Mon Mar 30 2020 05:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86795 * 120.00001 * 2 1 4 4 H 1.48501 * 109.47411 * 270.00122 * 3 2 1 5 5 H 1.48507 * 109.46831 * 30.00145 * 3 2 1 6 6 H 1.48502 * 109.47324 * 149.99611 * 3 2 1 7 7 C 1.39591 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99590 * 180.02562 * 7 2 1 9 9 N 1.36118 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.34768 * 119.99891 * 180.02562 * 9 7 2 11 11 O 1.21502 * 120.00503 * 359.97438 * 10 9 7 12 12 C 1.48834 * 120.00051 * 179.97438 * 10 9 7 13 13 O 1.21445 * 119.99627 * 359.97438 * 12 10 9 14 14 N 1.34770 * 120.00465 * 179.97438 * 12 10 9 15 15 C 1.46497 * 120.00315 * 179.97438 * 14 12 10 16 16 C 1.53002 * 109.47199 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47060 * 180.02562 * 16 15 14 18 18 N 1.46501 * 109.47323 * 180.02562 * 17 16 15 19 19 C 1.36890 * 126.39537 * 270.03108 * 18 17 16 20 20 C 1.34669 * 106.81617 * 179.97438 * 19 18 17 21 21 N 1.34134 * 108.02026 * 0.02562 * 20 19 18 22 22 C 1.30493 * 109.25480 * 0.02562 * 21 20 19 23 23 H 0.96997 * 120.00154 * 0.02562 * 1 2 3 24 24 H 0.96998 * 119.99499 * 359.97438 * 9 7 2 25 25 H 0.97006 * 119.99803 * 0.02562 * 14 12 10 26 26 H 1.09002 * 109.47142 * 60.00589 * 15 14 12 27 27 H 1.08998 * 109.47581 * 300.00052 * 15 14 12 28 28 H 1.09006 * 109.47212 * 60.00173 * 16 15 14 29 29 H 1.09002 * 109.47266 * 300.00402 * 16 15 14 30 30 H 1.09002 * 109.47343 * 60.00395 * 17 16 15 31 31 H 1.08998 * 109.47519 * 299.99774 * 17 16 15 32 32 H 1.07996 * 126.59258 * 359.97438 * 19 18 17 33 33 H 1.08002 * 125.99042 * 180.26007 * 20 19 18 34 34 H 1.08006 * 125.64594 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 2.4916 2.0465 -1.4001 5 1 1.4415 2.6526 0.7001 6 1 3.5417 1.4402 0.7001 7 6 2.0081 -1.2089 0.0005 8 1 3.0881 -1.2089 0.0010 9 7 1.3275 -2.3878 0.0005 10 6 2.0014 -3.5549 0.0016 11 8 3.2164 -3.5549 0.0021 12 6 1.2573 -4.8438 0.0022 13 8 0.0428 -4.8438 0.0022 14 7 1.9311 -6.0110 0.0027 15 6 1.1986 -7.2797 0.0038 16 6 2.1929 -8.4426 0.0049 17 6 1.4279 -9.7676 0.0054 18 7 2.3799 -10.8812 0.0070 19 6 2.9089 -11.4991 -1.0940 20 6 3.7333 -12.4629 -0.6413 21 7 3.7079 -12.4347 0.6995 22 6 2.8987 -11.4904 1.0948 23 1 -0.4850 0.8400 -0.0004 24 1 0.3575 -2.3877 0.0005 25 1 2.9011 -6.0110 0.0031 26 1 0.5717 -7.3381 -0.8860 27 1 0.5723 -7.3369 0.8940 28 1 2.8196 -8.3841 0.8948 29 1 2.8196 -8.3857 -0.8851 30 1 0.8016 -9.8260 -0.8848 31 1 0.8010 -9.8249 0.8952 32 1 2.7045 -11.2597 -2.1270 33 1 4.3160 -13.1377 -1.2509 34 1 2.6812 -11.2369 2.1219 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037244124.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:03 Heat of formation + Delta-G solvation = -38.970518 kcal Electronic energy + Delta-G solvation = -18745.773242 eV Core-core repulsion = 15485.724898 eV Total energy + Delta-G solvation = -3260.048344 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.89244 -41.28761 -39.21078 -37.26376 -36.31817 -35.06528 -33.46763 -31.90081 -30.28701 -28.16910 -26.88712 -24.49812 -22.95718 -22.22915 -21.78935 -21.10920 -20.36216 -18.83265 -18.30852 -17.59819 -17.00899 -16.75986 -16.11936 -16.05774 -15.95134 -15.70125 -15.09971 -14.81765 -14.59675 -14.50946 -14.07281 -13.68752 -13.51314 -13.43926 -12.97453 -12.74879 -12.58581 -12.31100 -12.11054 -12.04088 -11.67352 -10.92030 -10.60451 -10.29117 -10.24610 -10.22128 -9.41902 -8.67040 -6.11856 0.59229 1.16036 1.41128 1.46685 1.55292 1.73370 2.01783 2.25892 2.29981 2.36697 3.14656 3.26954 3.73320 3.76922 3.92484 3.95249 4.05030 4.18304 4.23442 4.42376 4.62916 4.63568 4.78169 4.93025 5.04884 5.24471 5.29502 5.38941 5.67302 5.85951 6.14100 6.32021 6.36824 6.80156 7.00395 7.17845 7.27539 7.79295 8.48722 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.057552 B = 0.002755 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.396772 B =10162.371671 C =10452.995499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.004 4.004 3 Si 1.009 2.991 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.264 1.264 7 C -0.346 4.346 8 H 0.098 0.902 9 N -0.511 5.511 10 C 0.387 3.613 11 O -0.619 6.619 12 C 0.520 3.480 13 O -0.564 6.564 14 N -0.696 5.696 15 C 0.121 3.879 16 C -0.134 4.134 17 C 0.111 3.889 18 N -0.456 5.456 19 C -0.051 4.051 20 C -0.063 4.063 21 N -0.542 5.542 22 C 0.174 3.826 23 H 0.289 0.711 24 H 0.401 0.599 25 H 0.416 0.584 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.120 0.880 32 H 0.199 0.801 33 H 0.177 0.823 34 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.692 -17.475 -1.181 17.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.209 4.209 3 Si 0.830 3.170 4 H -0.190 1.190 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.475 4.475 8 H 0.116 0.884 9 N -0.145 5.145 10 C 0.172 3.828 11 O -0.509 6.509 12 C 0.303 3.697 13 O -0.443 6.443 14 N -0.349 5.349 15 C -0.003 4.003 16 C -0.173 4.173 17 C -0.011 4.011 18 N -0.138 5.138 19 C -0.184 4.184 20 C -0.209 4.209 21 N -0.261 5.261 22 C -0.109 4.109 23 H 0.099 0.901 24 H 0.236 0.764 25 H 0.252 0.748 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.216 0.784 33 H 0.194 0.806 34 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 0.773 -17.780 -0.668 17.809 hybrid contribution -0.170 1.277 -0.538 1.396 sum 0.603 -16.503 -1.206 16.558 Atomic orbital electron populations 1.69541 1.07783 1.30835 1.45132 1.26525 0.96503 1.03448 0.94393 0.84709 0.78009 0.75108 0.79197 1.18955 1.19120 1.18843 1.19965 0.93661 0.83117 1.50796 0.88395 1.41660 1.10266 1.04828 1.57740 1.19693 0.87892 0.85384 0.89798 1.90553 1.13924 1.87335 1.59058 1.19982 0.86963 0.85891 0.76873 1.90690 1.14432 1.88297 1.50878 1.45604 1.11574 1.04605 1.73103 1.21438 0.94736 0.80548 1.03529 1.22017 0.98376 0.92361 1.04503 1.21927 0.89877 0.81928 1.07412 1.45724 1.34622 1.26840 1.06649 1.23199 1.02173 0.98997 0.94075 1.22668 1.04354 1.02784 0.91115 1.70251 1.21039 1.21451 1.13382 1.25541 0.96641 0.93596 0.95075 0.90074 0.76419 0.74767 0.90460 0.90322 0.90175 0.90372 0.86716 0.86227 0.78401 0.80561 0.75617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.33 13.03 21.77 0.28 -47.04 16 2 C 0.00 -0.22 5.51 85.14 0.47 0.25 16 3 Si 1.01 40.11 29.56 68.60 2.03 42.14 16 4 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 5 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 7 C -0.35 -19.14 9.67 84.35 0.82 -18.32 16 8 H 0.10 5.58 7.15 -2.91 -0.02 5.56 16 9 N -0.51 -27.42 5.25 -308.87 -1.62 -29.04 16 10 C 0.39 19.21 7.82 87.08 0.68 19.89 16 11 O -0.62 -32.78 16.03 -3.72 -0.06 -32.84 16 12 C 0.52 21.16 7.87 87.08 0.69 21.84 16 13 O -0.56 -24.77 16.47 -3.54 -0.06 -24.83 16 14 N -0.70 -20.39 5.55 -465.01 -2.58 -22.97 16 15 C 0.12 2.30 5.67 86.38 0.49 2.79 16 16 C -0.13 -1.66 5.65 30.59 0.17 -1.49 16 17 C 0.11 0.94 6.15 86.38 0.53 1.47 16 18 N -0.46 -6.31 2.75 -529.07 -1.46 -7.76 16 19 C -0.05 -0.76 11.58 83.08 0.96 0.20 16 20 C -0.06 -1.21 11.87 83.52 0.99 -0.22 16 21 N -0.54 -12.60 11.25 -200.31 -2.25 -14.85 16 22 C 0.17 2.97 12.56 180.27 2.26 5.23 16 23 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 24 H 0.40 21.70 7.35 -92.71 -0.68 21.01 16 25 H 0.42 11.62 7.93 -92.70 -0.74 10.89 16 26 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.20 1.73 8.06 -2.91 -0.02 1.71 16 33 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.23 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -72.45 309.31 2.07 -70.38 By element: Atomic # 1 Polarization: 35.45 SS G_CDS: -0.27 Total: 35.17 kcal Atomic # 6 Polarization: 23.59 SS G_CDS: 8.06 Total: 31.65 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -7.63 Total: -121.67 kcal Atomic # 8 Polarization: -57.56 SS G_CDS: -0.12 Total: -57.67 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -72.45 2.07 -70.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037244124.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.406 kcal (2) G-P(sol) polarization free energy of solvation -72.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds