Wall clock time and date at job start Mon Mar 30 2020 05:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38975 * 119.89804 * 2 1 4 4 N 1.39702 * 119.99212 * 0.02562 * 3 2 1 5 5 C 1.38649 * 120.02255 * 180.02562 * 3 2 1 6 6 C 1.39498 * 119.82396 * 0.02562 * 5 3 2 7 7 C 1.47870 * 120.10047 * 179.97438 * 6 5 3 8 8 O 1.21547 * 119.99924 * 140.65993 * 7 6 5 9 9 N 1.34771 * 119.99831 * 320.66299 * 7 6 5 10 10 C 1.46504 * 120.00363 * 4.84911 * 9 7 6 11 11 C 1.46502 * 119.99888 * 184.85114 * 9 7 6 12 12 C 1.50700 * 109.47027 * 90.00205 * 11 9 7 13 13 H 1.08001 * 119.99845 * 359.97438 * 12 11 9 14 14 C 1.37872 * 120.00250 * 180.02562 * 12 11 9 15 15 N 1.31512 * 120.00481 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99713 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46976 * 90.00511 * 16 14 12 18 18 H 1.48504 * 109.47001 * 210.00411 * 16 14 12 19 19 H 1.48494 * 109.47049 * 330.00471 * 16 14 12 20 20 C 1.39548 * 119.80217 * 359.97438 * 6 5 3 21 21 C 1.38265 * 119.97843 * 0.02562 * 20 6 5 22 22 F 1.35096 * 119.91437 * 179.97438 * 21 20 6 23 23 H 1.09007 * 109.47560 * 90.00081 * 1 2 3 24 24 H 1.09005 * 109.47321 * 210.00066 * 1 2 3 25 25 H 1.09000 * 109.47272 * 329.99564 * 1 2 3 26 26 H 0.97002 * 120.00228 * 179.97438 * 4 3 2 27 27 H 0.97006 * 119.99938 * 359.97438 * 4 3 2 28 28 H 1.07998 * 120.09100 * 179.74815 * 5 3 2 29 29 H 1.09002 * 109.46632 * 85.76139 * 10 9 7 30 30 H 1.08994 * 109.47283 * 205.76796 * 10 9 7 31 31 H 1.09004 * 109.47018 * 325.76928 * 10 9 7 32 32 H 1.09002 * 109.46744 * 209.99449 * 11 9 7 33 33 H 1.08999 * 109.46841 * 330.00037 * 11 9 7 34 34 H 0.96998 * 120.00431 * 179.97438 * 15 14 12 35 35 H 1.08000 * 120.01346 * 180.02562 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.2048 0.0000 4 7 1.4989 2.4133 0.0005 5 6 3.5862 1.2078 -0.0005 6 6 4.2826 -0.0009 -0.0016 7 6 5.7613 -0.0048 -0.0028 8 8 6.3674 -0.8208 0.6637 9 7 6.4370 0.8964 -0.7427 10 6 5.7106 1.9462 -1.4616 11 6 7.8978 0.8264 -0.8283 12 6 8.2915 -0.0478 -1.9911 13 1 7.5297 -0.5057 -2.6046 14 6 9.6241 -0.2638 -2.2710 15 7 9.9677 -1.0271 -3.2853 16 14 10.9417 0.5276 -1.2093 17 1 11.2859 -0.3823 -0.0874 18 1 12.1528 0.7813 -2.0304 19 1 10.4337 1.8130 -0.6662 20 6 3.5796 -1.2064 -0.0016 21 6 2.1970 -1.1998 -0.0011 22 9 1.5177 -2.3676 -0.0016 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5139 26 1 1.9823 3.2543 0.0009 27 1 0.5289 2.4114 0.0005 28 1 4.1257 2.1434 -0.0046 29 1 5.5421 2.7926 -0.7956 30 1 6.2975 2.2710 -2.3207 31 1 4.7518 1.5561 -1.8030 32 1 8.3016 1.8283 -0.9740 33 1 8.2960 0.4046 0.0945 34 1 10.9052 -1.1788 -3.4825 35 1 4.1153 -2.1442 -0.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037641489.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:00 Heat of formation + Delta-G solvation = -70.140304 kcal Electronic energy + Delta-G solvation = -19925.801108 eV Core-core repulsion = 16644.481179 eV Total energy + Delta-G solvation = -3281.319929 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.97316 -41.40276 -39.72883 -36.79679 -35.54572 -34.74262 -33.38710 -30.82992 -29.69141 -28.39297 -27.37597 -24.85271 -23.48167 -22.82514 -20.67748 -19.16505 -18.85283 -18.60930 -17.34424 -17.01624 -16.75153 -16.73243 -16.43285 -16.11217 -15.77230 -15.70858 -14.75874 -14.53439 -14.30678 -14.21873 -13.88794 -13.71531 -13.45245 -13.30447 -13.08603 -12.84594 -12.50514 -12.48490 -12.29520 -12.04635 -11.75806 -11.56674 -10.89629 -10.83365 -9.68247 -9.47928 -8.56510 -8.34658 -6.41132 -0.18619 0.29021 1.33551 1.38697 1.46764 1.70255 2.16604 2.31396 2.64271 2.80535 2.99723 3.35358 3.47194 3.79989 3.87732 4.16721 4.33481 4.40276 4.56081 4.63770 4.67400 4.77356 4.83928 4.87879 4.95288 4.97039 5.10883 5.20543 5.27405 5.43273 5.54990 5.71692 6.21271 6.46093 6.55307 6.60642 6.99856 7.14982 7.28641 8.82453 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.031365 B = 0.004791 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.495797 B = 5842.549667 C = 6289.721006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.181 4.181 3 C 0.250 3.750 4 N -0.848 5.848 5 C -0.171 4.171 6 C -0.063 4.063 7 C 0.542 3.458 8 O -0.590 6.590 9 N -0.594 5.594 10 C 0.070 3.930 11 C 0.221 3.779 12 C -0.542 4.542 13 H 0.026 0.974 14 C 0.011 3.989 15 N -0.946 5.946 16 Si 0.950 3.050 17 H -0.277 1.277 18 H -0.274 1.274 19 H -0.233 1.233 20 C -0.185 4.185 21 C 0.128 3.872 22 F -0.140 7.140 23 H 0.083 0.917 24 H 0.067 0.933 25 H 0.093 0.907 26 H 0.415 0.585 27 H 0.413 0.587 28 H 0.165 0.835 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.022 0.978 34 H 0.269 0.731 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.086 12.651 6.727 25.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.188 4.188 3 C 0.142 3.858 4 N -0.390 5.390 5 C -0.194 4.194 6 C -0.067 4.067 7 C 0.330 3.670 8 O -0.471 6.471 9 N -0.323 5.323 10 C -0.072 4.072 11 C 0.099 3.901 12 C -0.581 4.581 13 H 0.044 0.956 14 C -0.187 4.187 15 N -0.585 5.585 16 Si 0.773 3.227 17 H -0.203 1.203 18 H -0.199 1.199 19 H -0.156 1.156 20 C -0.207 4.207 21 C 0.108 3.892 22 F -0.118 7.118 23 H 0.102 0.898 24 H 0.086 0.914 25 H 0.112 0.888 26 H 0.246 0.754 27 H 0.245 0.755 28 H 0.182 0.818 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -20.648 12.175 6.942 24.955 hybrid contribution 0.972 -0.740 -0.060 1.223 sum -19.677 11.434 6.882 23.775 Atomic orbital electron populations 1.20657 0.87605 1.04184 1.03632 1.19664 0.98452 0.89892 1.10745 1.17003 0.89880 0.86997 0.91916 1.42432 1.09806 1.03803 1.82957 1.21214 0.92778 0.97758 1.07624 1.19245 0.91168 0.94463 1.01802 1.18847 0.88022 0.80476 0.79611 1.90707 1.71070 1.40347 1.45017 1.47823 1.07977 1.29838 1.46685 1.22372 0.97553 0.89867 0.97368 1.19456 0.77500 0.97501 0.95604 1.21558 0.92732 1.30473 1.13293 0.95576 1.25883 1.01151 0.95265 0.96367 1.70053 1.18361 1.39555 1.30574 0.85680 0.78142 0.80467 0.78451 1.20307 1.19882 1.15575 1.20765 0.92985 0.98405 1.08521 1.17033 0.88407 0.81492 1.02260 1.91455 1.79842 1.46652 1.93895 0.89814 0.91374 0.88815 0.75396 0.75508 0.81781 0.88826 0.90926 0.89831 0.92122 0.95997 0.92176 0.87060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 9.38 71.24 0.67 -0.70 16 2 C -0.18 -3.81 5.91 -19.65 -0.12 -3.92 16 3 C 0.25 4.57 6.73 38.16 0.26 4.82 16 4 N -0.85 -7.24 8.99 -51.47 -0.46 -7.70 16 5 C -0.17 -4.01 7.41 22.67 0.17 -3.84 16 6 C -0.06 -2.16 5.23 -20.11 -0.11 -2.27 16 7 C 0.54 24.07 7.35 86.79 0.64 24.70 16 8 O -0.59 -32.05 16.47 -3.86 -0.06 -32.11 16 9 N -0.59 -24.85 2.86 -854.54 -2.44 -27.30 16 10 C 0.07 1.98 8.88 127.77 1.13 3.12 16 11 C 0.22 10.90 4.25 85.63 0.36 11.26 16 12 C -0.54 -32.48 9.94 25.60 0.25 -32.22 16 13 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 14 C 0.01 0.68 5.47 84.65 0.46 1.14 16 15 N -0.95 -60.52 13.96 21.45 0.30 -60.22 16 16 Si 0.95 44.47 27.47 68.60 1.88 46.35 16 17 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.23 -9.59 6.54 99.48 0.65 -8.94 16 20 C -0.18 -6.49 9.61 22.59 0.22 -6.27 16 21 C 0.13 3.66 7.23 22.32 0.16 3.82 16 22 F -0.14 -4.04 16.45 44.97 0.74 -3.30 16 23 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 24 H 0.07 0.99 7.63 -2.38 -0.02 0.97 16 25 H 0.09 0.68 6.53 -2.39 -0.02 0.66 16 26 H 0.41 1.88 8.84 -92.71 -0.82 1.07 16 27 H 0.41 1.80 6.80 -92.70 -0.63 1.17 16 28 H 0.16 2.97 5.30 -2.91 -0.02 2.95 16 29 H 0.09 1.81 6.91 -2.39 -0.02 1.79 16 30 H 0.07 2.14 8.04 -2.39 -0.02 2.12 16 31 H 0.08 2.14 5.80 -2.38 -0.01 2.12 16 32 H 0.06 2.65 7.13 -2.39 -0.02 2.63 16 33 H 0.02 1.16 6.79 -2.39 -0.02 1.14 16 34 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 35 H 0.11 4.42 8.05 -2.91 -0.02 4.40 16 Total: -1.00 -82.38 296.64 3.70 -78.67 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -0.35 Total: 5.96 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 4.10 Total: -0.36 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -2.60 Total: -95.22 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -0.06 Total: -32.11 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.74 Total: -3.30 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.35 kcal Total: -82.38 3.70 -78.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037641489.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.534 kcal (2) G-P(sol) polarization free energy of solvation -82.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds