Wall clock time and date at job start Mon Mar 30 2020 04:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.47396 * 2 1 4 4 C 1.46890 * 110.99902 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47265 * 179.97438 * 4 3 2 6 6 C 1.38328 * 119.93284 * 270.02486 * 5 4 3 7 7 C 1.38077 * 120.07467 * 179.73733 * 6 5 4 8 8 C 1.38925 * 119.92353 * 0.53564 * 7 6 5 9 9 O 1.35725 * 120.07161 * 179.71676 * 8 7 6 10 10 C 1.22315 * 116.99769 * 354.26500 * 9 8 7 11 11 H 1.08005 * 119.99961 * 5.07462 * 10 9 8 12 12 C 1.46629 * 119.99857 * 185.07663 * 10 9 8 13 13 N 1.29374 * 119.99741 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 120.00260 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47204 * 89.99651 * 14 12 10 16 16 H 1.48499 * 109.47292 * 209.99847 * 14 12 10 17 17 H 1.48504 * 109.46821 * 330.00119 * 14 12 10 18 18 C 1.38891 * 119.85918 * 359.44413 * 8 7 6 19 19 N 1.48014 * 120.03470 * 180.25531 * 18 8 7 20 20 O 1.31708 * 119.99818 * 180.02562 * 19 18 8 21 21 O 1.31698 * 120.00300 * 359.97438 * 19 18 8 22 22 C 1.38111 * 119.92848 * 0.27498 * 18 8 7 23 23 H 1.09001 * 109.47556 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47000 * 300.00628 * 1 2 3 25 25 H 1.09004 * 109.47037 * 59.99756 * 1 2 3 26 26 H 1.09000 * 109.46556 * 239.99524 * 2 1 3 27 27 H 1.08999 * 109.46595 * 120.00092 * 2 1 3 28 28 H 1.00903 * 110.99274 * 303.95711 * 3 2 1 29 29 H 1.09009 * 109.47359 * 59.99810 * 4 3 2 30 30 H 1.08998 * 109.47464 * 300.00059 * 4 3 2 31 31 H 1.07999 * 119.96454 * 359.97438 * 6 5 4 32 32 H 1.08002 * 120.03605 * 180.27874 * 7 6 5 33 33 H 0.96994 * 119.99465 * 180.02562 * 13 12 10 34 34 H 1.07996 * 119.96405 * 179.97438 * 22 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4241 -0.0006 5 6 3.9525 2.8577 -0.0012 6 6 4.1642 3.5142 -1.2003 7 6 4.5845 4.8294 -1.2043 8 6 4.8054 5.4900 -0.0023 9 8 5.2241 6.7811 -0.0027 10 6 5.4933 7.2771 -1.0879 11 1 5.3158 6.7193 -1.9955 12 6 6.0571 8.6289 -1.1564 13 7 6.3424 9.1534 -2.3041 14 14 6.3649 9.5933 0.4135 15 1 7.7380 9.3139 0.9050 16 1 6.2237 11.0457 0.1381 17 1 5.3775 9.1869 1.4456 18 6 4.5915 4.8282 1.2000 19 7 4.8202 5.5301 2.4829 20 8 4.6176 4.9017 3.6225 21 8 5.2273 6.7826 2.4849 22 6 4.1655 3.5144 1.1971 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8932 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 1.6442 1.9012 -0.7814 29 1 3.8647 0.9202 -0.8909 30 1 3.8654 0.9200 0.8891 31 1 3.9969 2.9986 -2.1344 32 1 4.7452 5.3427 -2.1408 33 1 6.7157 10.0474 -2.3494 34 1 3.9994 2.9992 2.1315 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037703226.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:30 Heat of formation + Delta-G solvation = 39.708579 kcal Electronic energy + Delta-G solvation = -19791.922689 eV Core-core repulsion = 16502.993375 eV Total energy + Delta-G solvation = -3288.929313 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.28195 -38.42322 -36.94761 -35.85774 -33.89036 -32.62303 -31.70229 -30.65612 -28.99303 -26.43271 -25.22594 -24.12713 -22.07705 -21.89502 -20.51635 -19.13335 -18.36641 -16.66946 -16.37744 -15.78045 -15.49055 -15.34324 -14.96831 -14.83394 -14.33454 -14.12839 -13.91793 -13.60750 -13.16482 -12.74541 -12.50890 -12.26750 -11.68868 -11.59725 -11.43692 -11.18194 -11.12314 -10.92347 -10.58784 -10.21787 -9.78960 -9.62868 -9.40167 -9.21008 -8.63467 -8.37443 -7.93753 -7.73569 -4.41489 0.56690 1.86558 2.34483 2.80829 2.84764 2.88855 3.04361 3.72502 3.76657 3.93601 4.22676 4.55591 4.99045 5.13761 5.25202 5.30820 5.41475 5.51960 5.57415 5.69692 5.79924 5.88450 5.91853 6.08226 6.10277 6.35278 6.41009 6.55436 6.77462 6.86101 7.02468 7.07588 7.25471 7.38052 7.46640 7.65644 8.53268 8.83110 9.18372 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025584 B = 0.005158 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.166952 B = 5427.237460 C = 6258.283471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 N -0.688 5.688 4 C 0.121 3.879 5 C -0.194 4.194 6 C -0.048 4.048 7 C -0.193 4.193 8 C 0.060 3.940 9 O -0.039 6.039 10 C -0.312 4.312 11 H 0.121 0.879 12 C 0.070 3.930 13 N -0.742 5.742 14 Si 0.909 3.091 15 H -0.253 1.253 16 H -0.268 1.268 17 H -0.216 1.216 18 C -0.078 4.078 19 N 0.034 4.966 20 O -0.340 6.340 21 O -0.283 6.283 22 C 0.022 3.978 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.024 0.976 27 H 0.070 0.930 28 H 0.341 0.659 29 H 0.032 0.968 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.138 0.862 33 H 0.315 0.685 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.287 -8.835 -4.691 10.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.077 4.077 3 N -0.320 5.320 4 C -0.008 4.008 5 C -0.198 4.198 6 C -0.067 4.067 7 C -0.212 4.212 8 C -0.002 4.002 9 O 0.078 5.922 10 C -0.394 4.394 11 H 0.138 0.862 12 C -0.157 4.157 13 N -0.367 5.367 14 Si 0.728 3.272 15 H -0.177 1.177 16 H -0.193 1.193 17 H -0.137 1.137 18 C -0.180 4.180 19 N 0.447 4.553 20 O -0.485 6.485 21 O -0.441 6.441 22 C 0.002 3.998 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.088 0.912 28 H 0.159 0.841 29 H 0.050 0.950 30 H 0.092 0.908 31 H 0.134 0.866 32 H 0.156 0.844 33 H 0.128 0.872 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.270 -8.563 -4.095 10.408 hybrid contribution 0.415 0.403 -0.525 0.781 sum -3.855 -8.160 -4.620 10.139 Atomic orbital electron populations 1.21771 0.95194 1.01361 1.02495 1.21920 0.95558 0.90007 1.00192 1.60599 1.08231 1.12771 1.50369 1.20559 0.86904 0.92925 1.00372 1.18892 1.12471 0.96491 0.91974 1.20643 0.95826 0.93363 0.96886 1.20698 1.08219 0.95760 0.96539 1.18186 1.08151 0.81455 0.92427 1.80166 1.55960 1.21815 1.34292 1.21521 1.31420 0.99143 0.87280 0.86236 1.26895 0.92996 0.95450 1.00400 1.68525 1.23812 1.16751 1.27634 0.85987 0.83333 0.77300 0.80573 1.17679 1.19268 1.13704 1.18842 1.25892 0.94238 0.79073 1.49609 1.00654 1.02194 1.02873 1.96083 1.66504 1.68611 1.17291 1.96158 1.55230 0.96415 1.96248 1.20273 0.90652 0.90056 0.98788 0.92481 0.91748 0.92929 0.95742 0.91160 0.84114 0.95002 0.90807 0.86635 0.84412 0.87173 0.84766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.17 37.16 0.38 -0.99 16 2 C 0.05 0.54 6.40 -3.82 -0.02 0.52 16 3 N -0.69 -8.77 6.49 -115.06 -0.75 -9.51 16 4 C 0.12 1.61 5.81 -4.98 -0.03 1.59 16 5 C -0.19 -3.25 5.40 -104.57 -0.56 -3.81 16 6 C -0.05 -0.77 9.69 -39.61 -0.38 -1.16 16 7 C -0.19 -3.68 9.12 -39.39 -0.36 -4.04 16 8 C 0.06 1.38 6.58 -39.09 -0.26 1.13 16 9 O -0.04 -0.96 6.16 -1.14 -0.01 -0.97 16 10 C -0.31 -7.15 9.98 34.12 0.34 -6.81 16 11 H 0.12 2.62 5.14 -52.48 -0.27 2.35 16 12 C 0.07 1.52 5.69 -15.20 -0.09 1.44 16 13 N -0.74 -15.76 13.88 55.99 0.78 -14.98 16 14 Si 0.91 18.33 28.83 -169.99 -4.90 13.43 16 15 H -0.25 -5.14 7.11 56.52 0.40 -4.74 16 16 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 17 H -0.22 -4.88 6.70 56.52 0.38 -4.50 16 18 C -0.08 -1.85 6.90 -79.75 -0.55 -2.40 16 19 N 0.03 0.92 4.98 34.06 0.17 1.09 16 20 O -0.34 -9.35 19.15 -31.57 -0.60 -9.95 16 21 O -0.28 -8.09 17.49 -39.21 -0.69 -8.77 16 22 C 0.02 0.45 9.23 -39.61 -0.37 0.08 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.34 4.16 8.72 -39.29 -0.34 3.81 16 29 H 0.03 0.38 8.08 -51.92 -0.42 -0.04 16 30 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 31 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 32 H 0.14 2.46 5.69 -52.49 -0.30 2.17 16 33 H 0.31 5.85 8.26 -40.82 -0.34 5.52 16 34 H 0.13 2.64 7.58 -52.49 -0.40 2.24 16 LS Contribution 303.21 15.07 4.57 4.57 Total: -1.00 -28.08 303.21 -7.17 -35.26 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -3.84 Total: 4.31 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -1.90 Total: -14.47 kcal Atomic # 7 Polarization: -23.60 SS G_CDS: 0.20 Total: -23.40 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -1.30 Total: -19.70 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -4.90 Total: 13.43 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.08 -7.17 -35.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037703226.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.965 kcal (2) G-P(sol) polarization free energy of solvation -28.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds