Wall clock time and date at job start Mon Mar 30 2020 04:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.47396 * 2 1 4 4 C 1.46890 * 110.99902 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47265 * 179.97438 * 4 3 2 6 6 C 1.38328 * 119.93284 * 270.02486 * 5 4 3 7 7 C 1.38077 * 120.07467 * 179.73733 * 6 5 4 8 8 C 1.38925 * 119.92353 * 0.53564 * 7 6 5 9 9 O 1.35725 * 120.07161 * 179.71676 * 8 7 6 10 10 C 1.22315 * 116.99769 * 354.26500 * 9 8 7 11 11 H 1.08005 * 119.99961 * 5.07462 * 10 9 8 12 12 C 1.46629 * 119.99857 * 185.07663 * 10 9 8 13 13 N 1.29374 * 119.99741 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 120.00260 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47204 * 89.99651 * 14 12 10 16 16 H 1.48499 * 109.47292 * 209.99847 * 14 12 10 17 17 H 1.48504 * 109.46821 * 330.00119 * 14 12 10 18 18 C 1.38891 * 119.85918 * 359.44413 * 8 7 6 19 19 N 1.48014 * 120.03470 * 180.25531 * 18 8 7 20 20 O 1.31708 * 119.99818 * 180.02562 * 19 18 8 21 21 O 1.31698 * 120.00300 * 359.97438 * 19 18 8 22 22 C 1.38111 * 119.92848 * 0.27498 * 18 8 7 23 23 H 1.09001 * 109.47556 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47000 * 300.00628 * 1 2 3 25 25 H 1.09004 * 109.47037 * 59.99756 * 1 2 3 26 26 H 1.09000 * 109.46556 * 239.99524 * 2 1 3 27 27 H 1.08999 * 109.46595 * 120.00092 * 2 1 3 28 28 H 1.00903 * 110.99274 * 303.95711 * 3 2 1 29 29 H 1.09009 * 109.47359 * 59.99810 * 4 3 2 30 30 H 1.08998 * 109.47464 * 300.00059 * 4 3 2 31 31 H 1.07999 * 119.96454 * 359.97438 * 6 5 4 32 32 H 1.08002 * 120.03605 * 180.27874 * 7 6 5 33 33 H 0.96994 * 119.99465 * 180.02562 * 13 12 10 34 34 H 1.07996 * 119.96405 * 179.97438 * 22 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4241 -0.0006 5 6 3.9525 2.8577 -0.0012 6 6 4.1642 3.5142 -1.2003 7 6 4.5845 4.8294 -1.2043 8 6 4.8054 5.4900 -0.0023 9 8 5.2241 6.7811 -0.0027 10 6 5.4933 7.2771 -1.0879 11 1 5.3158 6.7193 -1.9955 12 6 6.0571 8.6289 -1.1564 13 7 6.3424 9.1534 -2.3041 14 14 6.3649 9.5933 0.4135 15 1 7.7380 9.3139 0.9050 16 1 6.2237 11.0457 0.1381 17 1 5.3775 9.1869 1.4456 18 6 4.5915 4.8282 1.2000 19 7 4.8202 5.5301 2.4829 20 8 4.6176 4.9017 3.6225 21 8 5.2273 6.7826 2.4849 22 6 4.1655 3.5144 1.1971 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8932 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 1.6442 1.9012 -0.7814 29 1 3.8647 0.9202 -0.8909 30 1 3.8654 0.9200 0.8891 31 1 3.9969 2.9986 -2.1344 32 1 4.7452 5.3427 -2.1408 33 1 6.7157 10.0474 -2.3494 34 1 3.9994 2.9992 2.1315 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037703226.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:29 Heat of formation + Delta-G solvation = 21.310291 kcal Electronic energy + Delta-G solvation = -19792.720499 eV Core-core repulsion = 16502.993375 eV Total energy + Delta-G solvation = -3289.727123 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.41938 -39.91213 -38.18660 -36.96529 -35.98636 -34.03937 -32.91922 -32.08655 -30.25375 -28.25732 -26.72308 -25.48165 -23.58834 -22.87786 -22.04929 -20.99350 -20.11393 -18.11386 -17.91043 -17.52949 -17.11609 -16.78853 -16.68012 -15.92510 -15.62633 -15.54769 -15.41028 -15.11267 -14.52369 -14.26227 -13.58400 -13.46070 -13.16834 -13.03480 -12.63807 -12.42867 -12.31344 -12.22932 -11.94927 -11.81822 -11.61992 -11.15342 -10.96750 -10.94892 -10.12053 -9.78942 -9.60840 -9.21826 -6.24245 -1.31789 0.33195 0.80126 1.10297 1.14527 1.27294 1.48204 1.94384 2.00633 2.17731 2.70090 3.50700 3.78976 3.93987 4.03814 4.21447 4.30101 4.36504 4.41401 4.51591 4.55444 4.69162 4.78418 4.85328 5.00602 5.02796 5.08560 5.18523 5.29299 5.36916 5.39013 5.63317 5.88899 6.17458 6.22619 6.57771 6.81249 7.10482 7.13613 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025584 B = 0.005158 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.166952 B = 5427.237460 C = 6258.283471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 N -0.705 5.705 4 C 0.119 3.881 5 C -0.121 4.121 6 C -0.065 4.065 7 C -0.158 4.158 8 C -0.027 4.027 9 O -0.041 6.041 10 C -0.200 4.200 11 H 0.159 0.841 12 C 0.048 3.952 13 N -0.672 5.672 14 Si 0.938 3.062 15 H -0.257 1.257 16 H -0.215 1.215 17 H -0.271 1.271 18 C -0.041 4.041 19 N 0.012 4.988 20 O -0.498 6.498 21 O -0.441 6.441 22 C -0.042 4.042 23 H 0.074 0.926 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.347 0.653 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.172 0.828 32 H 0.166 0.834 33 H 0.347 0.653 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.707 -7.781 -13.581 16.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.075 4.075 3 N -0.338 5.338 4 C -0.009 4.009 5 C -0.126 4.126 6 C -0.084 4.084 7 C -0.177 4.177 8 C -0.087 4.087 9 O 0.082 5.918 10 C -0.291 4.291 11 H 0.176 0.824 12 C -0.186 4.186 13 N -0.298 5.298 14 Si 0.757 3.243 15 H -0.181 1.181 16 H -0.137 1.137 17 H -0.195 1.195 18 C -0.157 4.157 19 N 0.361 4.639 20 O -0.602 6.602 21 O -0.555 6.555 22 C -0.062 4.062 23 H 0.093 0.907 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.166 0.834 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.189 0.811 32 H 0.183 0.817 33 H 0.163 0.837 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.667 -7.406 -12.532 15.012 hybrid contribution 0.468 0.659 0.557 0.982 sum -3.198 -6.747 -11.975 14.112 Atomic orbital electron populations 1.21752 0.94412 1.02368 1.02001 1.21967 0.96168 0.88520 1.00862 1.60481 1.07464 1.14717 1.51153 1.20643 0.87803 0.90491 1.01995 1.19528 1.04830 0.97338 0.90940 1.21071 0.96411 0.92588 0.98322 1.20989 1.05149 0.96572 0.94961 1.18573 1.15578 0.80546 0.93967 1.80274 1.51948 1.24150 1.35459 1.23075 1.19114 0.98380 0.88483 0.82432 1.27272 0.94082 0.95422 1.01855 1.68407 1.16177 1.17973 1.27278 0.85607 0.81652 0.79631 0.77411 1.18134 1.13689 1.19533 1.19475 1.22107 0.95103 0.78972 1.49216 1.09908 1.02168 1.02634 1.95899 1.75287 1.69605 1.19390 1.95941 1.63981 0.99178 1.96410 1.20306 0.96273 0.89795 0.99843 0.90739 0.93382 0.92276 0.93805 0.91628 0.83418 0.91425 0.91152 0.81102 0.81680 0.83652 0.86658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 10.17 71.98 0.73 -1.67 16 2 C 0.05 0.97 6.40 86.30 0.55 1.53 16 3 N -0.70 -16.50 6.49 -517.95 -3.36 -19.87 16 4 C 0.12 2.89 5.81 85.56 0.50 3.39 16 5 C -0.12 -3.90 5.40 -19.83 -0.11 -4.01 16 6 C -0.06 -1.79 9.69 22.25 0.22 -1.57 16 7 C -0.16 -5.27 9.12 22.40 0.20 -5.06 16 8 C -0.03 -1.24 6.58 22.59 0.15 -1.09 16 9 O -0.04 -1.95 6.16 73.29 0.45 -1.50 16 10 C -0.20 -7.91 9.98 70.01 0.70 -7.21 16 11 H 0.16 5.28 5.14 -2.91 -0.01 5.27 16 12 C 0.05 1.75 5.69 87.25 0.50 2.25 16 13 N -0.67 -21.61 13.88 23.22 0.32 -21.28 16 14 Si 0.94 34.65 28.83 68.60 1.98 36.63 16 15 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 16 H -0.22 -6.33 7.11 99.48 0.71 -5.62 16 17 H -0.27 -13.07 6.70 99.48 0.67 -12.40 16 18 C -0.04 -2.18 6.90 36.50 0.25 -1.93 16 19 N 0.01 0.79 4.98 -46.16 -0.23 0.56 16 20 O -0.50 -34.49 19.15 3.50 0.07 -34.42 16 21 O -0.44 -30.21 17.49 10.83 0.19 -30.02 16 22 C -0.04 -1.86 9.23 22.25 0.21 -1.66 16 23 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.35 7.29 8.72 -89.69 -0.78 6.51 16 29 H 0.07 1.24 8.08 -2.38 -0.02 1.22 16 30 H 0.07 1.82 8.08 -2.39 -0.02 1.80 16 31 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 32 H 0.17 4.42 5.69 -2.91 -0.02 4.41 16 33 H 0.35 9.14 8.26 -92.71 -0.77 8.37 16 34 H 0.12 5.42 7.58 -2.91 -0.02 5.40 16 Total: -1.00 -77.23 303.21 3.63 -73.60 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.32 Total: 13.33 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 3.90 Total: -17.03 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: -3.27 Total: -40.59 kcal Atomic # 8 Polarization: -66.66 SS G_CDS: 0.71 Total: -65.95 kcal Atomic # 14 Polarization: 34.65 SS G_CDS: 1.98 Total: 36.63 kcal Total: -77.23 3.63 -73.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037703226.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.906 kcal (2) G-P(sol) polarization free energy of solvation -77.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds